Wall clock time and date at job start Sat Apr 11 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47182 * 2 1 4 4 C 1.53002 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.54682 * 29.28030 * 4 3 2 6 6 C 1.53007 * 117.50132 * 243.61211 * 4 3 2 7 7 C 1.53000 * 117.50017 * 174.98576 * 4 3 2 8 8 H 1.08997 * 117.49920 * 0.02562 * 7 4 3 9 9 C 1.50699 * 117.50189 * 214.97864 * 7 4 3 10 10 O 1.21284 * 119.99472 * 0.02562 * 9 7 4 11 11 N 1.34772 * 120.00055 * 180.02562 * 9 7 4 12 12 C 1.46504 * 119.99818 * 180.02562 * 11 9 7 13 13 H 1.09006 * 112.84778 * 333.05935 * 12 11 9 14 14 C 1.53778 * 113.61682 * 104.36613 * 12 11 9 15 15 C 1.53782 * 87.07962 * 89.11335 * 14 12 11 16 16 H 1.09002 * 113.61126 * 139.98293 * 15 14 12 17 17 N 1.46501 * 113.69261 * 270.87440 * 15 14 12 18 18 C 1.34773 * 119.99615 * 182.72369 * 17 15 14 19 19 O 1.21282 * 120.00621 * 359.97438 * 18 17 15 20 20 C 1.50708 * 119.99596 * 179.97438 * 18 17 15 21 21 S 1.80998 * 109.46930 * 179.97438 * 20 18 17 22 22 C 1.76199 * 99.99989 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00226 * 0.02562 * 22 21 20 24 24 C 1.38803 * 120.00040 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00122 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46851 * 60.00163 * 26 24 22 28 28 H 1.48504 * 109.46885 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47320 * 300.00230 * 26 24 22 30 30 C 1.53782 * 87.08144 * 25.43626 * 15 14 12 31 31 H 1.08999 * 109.47628 * 300.00499 * 1 2 3 32 32 H 1.09004 * 109.46701 * 60.00296 * 1 2 3 33 33 H 1.08998 * 109.47051 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47628 * 239.99501 * 2 1 3 35 35 H 1.09004 * 109.46701 * 119.99704 * 2 1 3 36 36 H 1.09009 * 109.46908 * 59.99745 * 3 2 1 37 37 H 1.08991 * 109.47138 * 299.99769 * 3 2 1 38 38 H 1.09001 * 117.49558 * 0.02562 * 6 4 3 39 39 H 1.09000 * 117.49768 * 144.99873 * 6 4 3 40 40 H 0.96993 * 120.00415 * 0.02562 * 11 9 7 41 41 H 1.08993 * 113.61767 * 203.66166 * 14 12 11 42 42 H 1.09000 * 113.61196 * 334.56904 * 14 12 11 43 43 H 0.96992 * 120.00054 * 2.71831 * 17 15 14 44 44 H 1.08998 * 109.46890 * 299.99525 * 20 18 17 45 45 H 1.08996 * 109.47255 * 60.00296 * 20 18 17 46 46 H 0.96994 * 120.00172 * 180.02562 * 25 24 22 47 47 H 1.09004 * 113.61469 * 220.01882 * 30 15 14 48 48 H 1.08996 * 113.61616 * 89.11528 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5846 -0.4800 6 6 4.2760 2.0459 1.2166 7 6 4.2765 2.7944 -0.1179 8 1 3.6513 3.6839 -0.1959 9 6 5.5696 2.8385 -0.8904 10 8 6.0121 1.8259 -1.3903 11 7 6.2344 4.0030 -1.0259 12 6 7.4912 4.0459 -1.7774 13 1 8.0192 3.0922 -1.7739 14 6 7.3517 4.6697 -3.1761 15 6 7.6398 6.0271 -2.5133 16 1 8.2881 6.6731 -3.1052 17 7 6.4386 6.7138 -2.0317 18 6 6.5388 7.9388 -1.4788 19 8 7.6234 8.4725 -1.3794 20 6 5.3031 8.6455 -0.9840 21 16 5.7628 10.2571 -0.3003 22 6 4.1755 10.8466 0.1872 23 1 3.2993 10.2367 0.0238 24 6 4.0513 12.0945 0.7821 25 7 5.1191 12.8377 0.9817 26 14 2.3685 12.7192 1.2995 27 1 1.7790 11.7873 2.2941 28 1 2.5061 14.0682 1.9051 29 1 1.4829 12.7990 0.1102 30 6 8.3836 5.2454 -1.4175 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 1.6765 1.9563 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.6504 2.4424 2.0163 39 1 5.2107 1.5850 1.5358 40 1 5.8807 4.8127 -0.6258 41 1 8.1254 4.3521 -3.8750 42 1 6.3469 4.5909 -3.5910 43 1 5.5713 6.2869 -2.1109 44 1 4.6089 8.7865 -1.8124 45 1 4.8269 8.0449 -0.2090 46 1 5.0324 13.7096 1.3977 47 1 8.2118 5.6315 -0.4127 48 1 9.4394 5.0853 -1.6356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578765522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:56 Heat of formation + Delta-G solvation = -45.942040 kcal Electronic energy + Delta-G solvation = -26590.636393 eV Core-core repulsion = 22772.601714 eV Total energy + Delta-G solvation = -3818.034679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90985 -39.69319 -38.20571 -37.17267 -34.20646 -33.82546 -32.70786 -32.47026 -29.19992 -27.93066 -26.04998 -25.63650 -25.38368 -23.47295 -22.30835 -21.13965 -20.67441 -20.18888 -19.66907 -17.90678 -17.62846 -16.54556 -16.27315 -15.91974 -15.76086 -15.54165 -15.12996 -14.84576 -14.79201 -14.57092 -14.45524 -13.98770 -13.67760 -13.29929 -13.14539 -12.81580 -12.76154 -12.62105 -12.54061 -12.38799 -12.09254 -12.00770 -11.67290 -11.41320 -11.18566 -11.13667 -11.09123 -11.07050 -10.82166 -10.61452 -10.57723 -10.36484 -10.03043 -9.87269 -9.49204 -9.34259 -9.10589 -8.96194 -8.29756 -6.55343 -6.25796 -3.97015 2.21457 2.72983 2.95297 2.99865 3.20154 3.24292 3.27006 3.48215 3.61974 4.16040 4.18751 4.19097 4.36069 4.40318 4.45517 4.59320 4.71142 4.77865 4.83354 4.90242 4.90757 5.07765 5.09433 5.16891 5.36054 5.37829 5.42074 5.45493 5.47062 5.48875 5.53173 5.56736 5.61430 5.68641 5.69623 5.78258 5.80818 5.85710 5.86974 5.90145 6.04080 6.05037 6.25461 6.60790 7.23161 7.54609 7.58333 7.96423 8.30429 8.51194 9.19411 10.81512 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.002635 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.832357 B =10621.835888 C =13542.622264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.147 4.147 7 C -0.195 4.195 8 H 0.125 0.875 9 C 0.547 3.453 10 O -0.541 6.541 11 N -0.709 5.709 12 C 0.119 3.881 13 H 0.102 0.898 14 C -0.154 4.154 15 C 0.125 3.875 16 H 0.095 0.905 17 N -0.726 5.726 18 C 0.533 3.467 19 O -0.510 6.510 20 C -0.155 4.155 21 S -0.057 6.057 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 C -0.156 4.156 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.403 0.597 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.396 0.604 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.080 0.920 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -24.637 -3.904 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.134 4.134 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.216 4.216 8 H 0.143 0.857 9 C 0.334 3.666 10 O -0.418 6.418 11 N -0.361 5.361 12 C 0.014 3.986 13 H 0.120 0.880 14 C -0.193 4.193 15 C 0.020 3.980 16 H 0.113 0.887 17 N -0.382 5.382 18 C 0.319 3.681 19 O -0.383 6.383 20 C -0.306 4.306 21 S 0.169 5.831 22 C -0.685 4.685 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 C -0.195 4.195 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.239 0.761 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.117 -24.274 -4.026 24.631 hybrid contribution -2.876 0.201 0.332 2.902 sum -3.993 -24.073 -3.694 24.680 Atomic orbital electron populations 1.21785 0.95800 1.01656 1.01906 1.21494 0.95736 0.96419 1.02274 1.21268 0.91774 0.97462 1.02443 1.22453 0.94790 0.95100 1.01024 0.86464 1.23124 1.03169 1.01828 0.90337 1.22326 0.97633 0.99269 1.02378 0.85698 1.19708 0.84610 0.82947 0.79328 1.90686 1.68525 1.33983 1.48622 1.45771 1.24004 1.11174 1.55159 1.21925 0.85213 0.99852 0.91627 0.87953 1.23728 1.03508 0.94893 0.97177 1.21799 0.87839 0.92816 0.95588 0.88742 1.45888 1.09347 1.18650 1.64285 1.20350 0.91003 0.80132 0.76627 1.90716 1.28867 1.64948 1.53753 1.23550 0.98181 1.04837 1.03990 1.85426 1.12746 1.08271 1.76646 1.22816 0.93361 1.05660 1.46712 0.90984 1.24991 0.97874 0.95620 0.95054 1.69997 1.28545 1.11127 1.40549 0.86229 0.82414 0.78003 0.78882 1.19921 1.20792 1.19930 1.23743 0.99668 0.95125 1.00995 0.92693 0.92696 0.92750 0.91852 0.91826 0.91445 0.91287 0.87578 0.88295 0.76058 0.87646 0.90497 0.76962 0.89177 0.89292 0.92079 0.90110 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.15 0.37 -0.51 16 2 C -0.12 -0.75 5.89 -26.73 -0.16 -0.91 16 3 C -0.09 -0.61 5.50 -26.73 -0.15 -0.75 16 4 C -0.12 -0.92 5.25 -90.62 -0.48 -1.39 16 5 H 0.12 1.10 7.60 -51.93 -0.39 0.71 16 6 C -0.15 -1.11 9.88 -26.72 -0.26 -1.38 16 7 C -0.19 -1.64 5.91 -91.77 -0.54 -2.18 16 8 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.55 5.86 7.61 -10.99 -0.08 5.78 16 10 O -0.54 -7.57 15.90 5.55 0.09 -7.49 16 11 N -0.71 -6.67 4.96 -53.01 -0.26 -6.93 16 12 C 0.12 1.12 4.28 -67.12 -0.29 0.83 16 13 H 0.10 1.04 7.54 -51.93 -0.39 0.64 16 14 C -0.15 -1.30 7.58 -25.92 -0.20 -1.49 16 15 C 0.13 1.34 3.99 -67.12 -0.27 1.08 16 16 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 17 N -0.73 -8.72 4.34 -53.01 -0.23 -8.95 16 18 C 0.53 9.18 7.85 -10.98 -0.09 9.09 16 19 O -0.51 -10.92 15.80 5.56 0.09 -10.83 16 20 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 21 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 22 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 23 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 24 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 26 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 C -0.16 -1.55 7.62 -25.92 -0.20 -1.75 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.41 7.87 -51.92 -0.41 0.01 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.66 8.03 -51.93 -0.42 0.25 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.50 7.19 -40.82 -0.29 3.20 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.40 3.77 7.83 -40.82 -0.32 3.45 16 44 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 45 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -34.60 412.29 -10.63 -45.23 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.11 Total: 4.41 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.92 Total: -8.89 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.24 Total: -40.85 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.18 Total: -18.32 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.60 -10.63 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578765522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.713 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds