Wall clock time and date at job start Sat Apr 11 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50695 * 120.00232 * 2 1 4 4 C 1.33000 * 119.99807 * 179.97438 * 2 1 3 5 5 C 1.47098 * 120.00311 * 0.02562 * 4 2 1 6 6 O 1.21616 * 119.99510 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00378 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00061 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47164 * 179.97438 * 8 7 5 10 10 H 1.08996 * 109.49320 * 304.93220 * 9 8 7 11 11 C 1.53040 * 109.49739 * 184.83595 * 9 8 7 12 12 C 1.53038 * 109.53752 * 178.68235 * 11 9 8 13 13 C 1.52760 * 109.38499 * 61.23643 * 12 11 9 14 14 N 1.46929 * 109.01036 * 305.59109 * 13 12 11 15 15 C 1.34769 * 120.62932 * 233.57902 * 14 13 12 16 16 O 1.21282 * 119.99850 * 179.71737 * 15 14 13 17 17 C 1.50702 * 120.00466 * 359.72164 * 15 14 13 18 18 S 1.81000 * 109.47238 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99610 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99527 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00398 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99780 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47101 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47171 * 120.00313 * 23 21 19 26 26 H 1.48508 * 109.47025 * 240.00117 * 23 21 19 27 27 C 1.46924 * 118.73738 * 53.30576 * 14 13 12 28 28 H 1.08997 * 109.47907 * 240.00401 * 1 2 3 29 29 H 1.08997 * 109.47179 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47217 * 120.00108 * 1 2 3 31 31 H 1.09007 * 109.47139 * 269.99898 * 3 2 1 32 32 H 1.09001 * 109.47257 * 29.99514 * 3 2 1 33 33 H 1.09005 * 109.47500 * 149.99619 * 3 2 1 34 34 H 1.08001 * 119.99559 * 180.02562 * 4 2 1 35 35 H 0.97006 * 119.99781 * 359.97438 * 7 5 4 36 36 H 1.08995 * 109.47383 * 59.99640 * 8 7 5 37 37 H 1.09003 * 109.47010 * 299.99159 * 8 7 5 38 38 H 1.08999 * 109.45944 * 298.70228 * 11 9 8 39 39 H 1.08995 * 109.46235 * 58.67482 * 11 9 8 40 40 H 1.08997 * 109.50265 * 181.31898 * 12 11 9 41 41 H 1.09003 * 109.49620 * 301.38397 * 12 11 9 42 42 H 1.08995 * 109.51094 * 185.70598 * 13 12 11 43 43 H 1.09008 * 109.43072 * 65.42313 * 13 12 11 44 44 H 1.09004 * 109.46923 * 59.99646 * 17 15 14 45 45 H 1.09004 * 109.46818 * 300.00196 * 17 15 14 46 46 H 0.97006 * 120.00587 * 179.97438 * 22 21 19 47 47 H 1.09005 * 109.58550 * 66.43060 * 27 14 13 48 48 H 1.08999 * 109.59134 * 186.85484 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4364 -2.4258 0.0005 6 8 0.2203 -2.4257 -0.0004 7 7 2.1102 -3.5929 0.0016 8 6 1.3777 -4.8616 0.0010 9 6 2.3720 -6.0246 0.0018 10 1 3.0561 -5.9188 -0.8401 11 6 1.6113 -7.3470 -0.1204 12 6 2.6068 -8.5089 -0.1528 13 6 3.4055 -8.5287 1.1491 14 7 4.0223 -7.2107 1.3523 15 6 5.3481 -7.0987 1.5668 16 8 5.8461 -6.0046 1.7279 17 6 6.2120 -8.3329 1.6062 18 16 7.9317 -7.8563 1.9091 19 6 8.6943 -9.4447 1.9066 20 1 8.0971 -10.3302 1.7462 21 6 10.0627 -9.5578 2.1096 22 7 10.7905 -8.4786 2.3045 23 14 10.8714 -11.2417 2.1062 24 1 9.8417 -12.2848 1.8680 25 1 11.8925 -11.2983 1.0295 26 1 11.5228 -11.4806 3.4192 27 6 3.1672 -6.0166 1.3111 28 1 -0.3635 -0.5137 0.8900 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 2.4422 1.6197 -1.0277 32 1 1.6714 2.0647 0.5138 33 1 3.2129 1.1747 0.5139 34 1 3.2519 -1.1518 0.0009 35 1 3.0803 -3.5929 0.0019 36 1 0.7520 -4.9195 -0.8896 37 1 0.7501 -4.9192 0.8904 38 1 0.9453 -7.4631 0.7345 39 1 1.0254 -7.3453 -1.0395 40 1 2.0657 -9.4486 -0.2634 41 1 3.2885 -8.3805 -0.9936 42 1 4.1828 -9.2903 1.0878 43 1 2.7374 -8.7515 1.9811 44 1 6.1428 -8.8555 0.6521 45 1 5.8704 -8.9900 2.4060 46 1 11.7469 -8.5576 2.4467 47 1 2.4792 -6.0305 2.1565 48 1 3.7872 -5.1213 1.3566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578883386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:03 Heat of formation + Delta-G solvation = -73.992432 kcal Electronic energy + Delta-G solvation = -26755.698766 eV Core-core repulsion = 22936.447731 eV Total energy + Delta-G solvation = -3819.251035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35661 -39.72731 -37.63502 -35.97466 -34.97248 -32.97609 -32.45445 -31.61219 -29.53868 -28.42726 -27.97769 -25.87496 -25.60090 -25.07026 -22.58263 -21.18226 -20.86854 -19.13017 -18.92964 -17.70125 -17.14913 -16.72420 -16.13392 -15.95869 -15.37562 -15.21198 -14.82916 -14.78664 -14.58070 -14.28896 -14.08087 -14.00675 -13.89116 -13.43155 -13.28596 -13.07367 -12.85108 -12.70977 -12.64804 -12.52389 -12.04795 -12.03776 -11.93640 -11.83323 -11.37038 -11.13878 -11.09015 -11.05316 -10.95708 -10.82087 -10.75105 -9.81856 -9.78430 -9.54394 -9.39926 -9.09984 -9.09056 -8.56389 -8.25146 -6.52950 -6.24323 -3.94994 1.13589 2.88144 3.00413 3.04689 3.12293 3.19534 3.24029 3.29072 3.56087 4.17498 4.38068 4.42251 4.48945 4.54351 4.55962 4.78534 4.91197 4.95072 5.00656 5.10955 5.11185 5.13734 5.16992 5.28518 5.35891 5.38002 5.41244 5.47512 5.52912 5.55791 5.60978 5.62420 5.64269 5.76576 5.82717 5.83278 5.84861 5.90625 6.07974 6.09920 6.20457 6.23752 6.29613 6.58213 7.34797 7.51209 7.57461 8.07995 8.32773 8.51169 9.21194 10.83117 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.002121 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.020883 B =13201.062878 C =14787.828247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.033 4.033 3 C -0.128 4.128 4 C -0.238 4.238 5 C 0.546 3.454 6 O -0.547 6.547 7 N -0.728 5.728 8 C 0.130 3.870 9 C -0.116 4.116 10 H 0.083 0.917 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.106 3.894 14 N -0.620 5.620 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.118 3.882 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.404 0.596 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.872 9.569 -6.200 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.035 4.035 3 C -0.185 4.185 4 C -0.259 4.259 5 C 0.336 3.664 6 O -0.427 6.427 7 N -0.380 5.380 8 C 0.006 3.994 9 C -0.136 4.136 10 H 0.102 0.898 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.017 4.017 14 N -0.356 5.356 15 C 0.324 3.676 16 O -0.392 6.392 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.005 4.005 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.239 0.761 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.799 11.239 -5.911 25.228 hybrid contribution 0.554 -2.521 -0.213 2.590 sum -21.245 8.718 -6.124 23.767 Atomic orbital electron populations 1.21043 0.90838 1.01011 1.04312 1.22587 0.96881 0.94538 0.89459 1.21039 1.00249 0.94236 1.02959 1.22400 1.00301 0.91876 1.11314 1.18555 0.87317 0.84341 0.76171 1.90766 1.13738 1.87829 1.50360 1.45972 1.10681 1.05634 1.75733 1.21315 0.94079 0.81539 1.02506 1.21815 0.97482 0.94754 0.99522 0.89846 1.21468 0.97616 0.93129 1.02557 1.21845 0.98368 0.98773 0.98346 1.21654 0.97832 0.85030 0.97198 1.48084 1.07122 1.07015 1.73341 1.20347 0.81134 0.91045 0.75116 1.90682 1.72320 1.28308 1.47928 1.23555 1.03436 0.98326 1.04781 1.85396 0.92195 1.12152 1.93752 1.22896 0.95556 0.92791 1.57034 0.90887 1.24995 0.96213 0.97865 0.94538 1.70024 1.06756 1.27990 1.45481 0.86118 0.79137 0.82315 0.77931 1.19608 1.20561 1.20556 1.21539 0.93292 0.89630 0.96026 0.89923 0.93015 0.90027 0.90278 0.90956 0.90915 0.85485 0.76069 0.91189 0.91248 0.91344 0.91316 0.90392 0.91194 0.89129 0.91482 0.89270 0.89268 0.92223 0.91671 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.33 36.00 0.30 -0.72 16 2 C -0.03 -0.28 6.11 -101.17 -0.62 -0.89 16 3 C -0.13 -0.75 9.98 36.00 0.36 -0.39 16 4 C -0.24 -2.20 9.63 -37.81 -0.36 -2.56 16 5 C 0.55 6.08 7.73 -12.67 -0.10 5.98 16 6 O -0.55 -7.43 13.07 5.26 0.07 -7.36 16 7 N -0.73 -6.98 5.33 -61.49 -0.33 -7.31 16 8 C 0.13 1.16 5.07 -4.04 -0.02 1.14 16 9 C -0.12 -1.02 2.38 -90.50 -0.21 -1.24 16 10 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -0.82 5.17 -26.69 -0.14 -0.95 16 12 C -0.14 -1.10 6.06 -26.83 -0.16 -1.26 16 13 C 0.11 1.09 6.31 -3.93 -0.02 1.06 16 14 N -0.62 -8.36 2.98 -173.03 -0.52 -8.87 16 15 C 0.54 9.87 7.72 -10.99 -0.08 9.78 16 16 O -0.52 -11.41 15.27 5.56 0.08 -11.32 16 17 C -0.15 -2.99 4.50 36.01 0.16 -2.83 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.04 9.50 30.94 0.29 -14.74 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.12 1.34 5.52 -3.71 -0.02 1.32 16 28 H 0.08 0.85 7.22 -51.93 -0.37 0.47 16 29 H 0.05 0.35 7.94 -51.93 -0.41 -0.06 16 30 H 0.08 0.82 7.22 -51.92 -0.37 0.45 16 31 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.40 3.53 7.68 -40.82 -0.31 3.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 43 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.09 1.64 7.68 -51.91 -0.40 1.24 16 45 H 0.09 1.65 7.95 -51.92 -0.41 1.24 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.19 6.21 -51.93 -0.32 0.87 16 LS Contribution 400.36 15.07 6.03 6.03 Total: -1.00 -35.01 400.36 -9.83 -44.85 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.95 Total: 1.20 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.73 Total: -4.33 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.11 Total: -41.36 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.15 Total: -18.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.01 -9.83 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578883386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.144 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds