Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47206 * 2 1 4 4 C 1.53009 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47170 * 305.00206 * 4 3 2 6 6 C 1.52996 * 109.46959 * 65.00266 * 4 3 2 7 7 C 1.50699 * 109.46790 * 184.99788 * 4 3 2 8 8 O 1.21281 * 120.00543 * 327.78466 * 7 4 3 9 9 N 1.34782 * 119.99927 * 147.77540 * 7 4 3 10 10 C 1.48147 * 127.83241 * 4.68129 * 9 7 4 11 11 C 1.54793 * 104.41610 * 140.36591 * 10 9 7 12 12 H 1.09001 * 118.33343 * 244.38631 * 11 10 9 13 13 C 1.54292 * 104.92161 * 24.16014 * 11 10 9 14 14 H 1.08994 * 121.81452 * 222.88674 * 13 11 10 15 15 C 1.48141 * 127.83844 * 184.99087 * 9 7 4 16 16 C 1.53000 * 61.49946 * 114.02108 * 13 11 10 17 17 H 1.09004 * 117.44082 * 251.43837 * 16 13 11 18 18 N 1.46497 * 117.44331 * 106.68916 * 16 13 11 19 19 C 1.34773 * 120.00091 * 154.99925 * 18 16 13 20 20 O 1.21286 * 120.00146 * 0.02562 * 19 18 16 21 21 C 1.50702 * 120.00353 * 180.02562 * 19 18 16 22 22 S 1.81000 * 109.47325 * 180.02562 * 21 19 18 23 23 C 1.76199 * 100.00030 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99639 * 359.97438 * 23 22 21 25 25 C 1.38800 * 120.00456 * 180.02562 * 23 22 21 26 26 N 1.31636 * 119.99284 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00279 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47188 * 60.00093 * 27 25 23 29 29 H 1.48501 * 109.46833 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46868 * 299.99815 * 27 25 23 31 31 H 1.08997 * 109.47071 * 60.00279 * 1 2 3 32 32 H 1.09006 * 109.47233 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46942 * 300.00264 * 1 2 3 34 34 H 1.08998 * 109.46942 * 239.99736 * 2 1 3 35 35 H 1.09007 * 109.46841 * 120.00469 * 2 1 3 36 36 H 1.09003 * 109.47062 * 60.00341 * 3 2 1 37 37 H 1.08995 * 109.47367 * 299.99665 * 3 2 1 38 38 H 1.09002 * 109.47021 * 172.80864 * 6 4 3 39 39 H 1.08997 * 109.47284 * 292.80852 * 6 4 3 40 40 H 1.09000 * 109.47447 * 52.80776 * 6 4 3 41 41 H 1.08996 * 110.40529 * 259.18966 * 10 9 7 42 42 H 1.09000 * 110.41026 * 21.62743 * 10 9 7 43 43 H 1.08996 * 110.41286 * 338.37784 * 15 9 7 44 44 H 1.09011 * 110.40498 * 100.69134 * 15 9 7 45 45 H 0.97001 * 119.99910 * 334.99988 * 18 16 13 46 46 H 1.08997 * 109.46984 * 300.00369 * 21 19 18 47 47 H 1.08998 * 109.46735 * 60.00107 * 21 19 18 48 48 H 0.96998 * 119.99793 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8426 6 6 4.0806 0.8325 -1.3064 7 6 4.0724 2.8577 0.1244 8 8 3.4370 3.7711 -0.3581 9 7 5.2277 3.1086 0.7716 10 6 6.1830 2.1285 1.3387 11 6 7.5774 2.7164 1.0129 12 1 8.2289 2.1599 0.3393 13 6 7.3407 4.2321 0.8479 14 1 7.8046 4.8018 0.0428 15 6 5.8273 4.4271 1.0828 16 6 8.1964 3.7503 2.0211 17 1 7.7662 3.8234 3.0200 18 7 9.6420 3.9731 1.9387 19 6 10.3766 4.0547 3.0657 20 8 9.8410 3.9432 4.1482 21 6 11.8636 4.2844 2.9810 22 16 12.5608 4.3448 4.6503 23 6 14.2583 4.6159 4.2632 24 1 14.5715 4.6923 3.2324 25 6 15.1930 4.7303 5.2829 26 7 14.8112 4.6367 6.5392 27 14 16.9927 5.0169 4.8724 28 1 17.1314 6.2864 4.1147 29 1 17.7793 5.1026 6.1291 30 1 17.4978 3.8902 4.0475 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6768 1.9562 -0.8900 38 1 5.1630 0.9479 -1.3628 39 1 3.8260 -0.2269 -1.3369 40 1 3.6164 1.3421 -2.1508 41 1 6.0459 2.0441 2.4167 42 1 6.0584 1.1564 0.8615 43 1 5.4340 5.1912 0.4124 44 1 5.6337 4.6972 2.1210 45 1 10.0705 4.0618 1.0730 46 1 12.3259 3.4697 2.4238 47 1 12.0569 5.2286 2.4718 48 1 15.4643 4.7169 7.2518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579088020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -53.567774 kcal Electronic energy + Delta-G solvation = -26133.895555 eV Core-core repulsion = 22315.530200 eV Total energy + Delta-G solvation = -3818.365355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89113 -39.51911 -38.43379 -36.31215 -34.81114 -32.77396 -32.46646 -32.04019 -29.21986 -28.89669 -27.12850 -26.31727 -25.50633 -23.73139 -21.83994 -21.26986 -20.66287 -20.40537 -19.27216 -17.92029 -17.66657 -16.79116 -16.49664 -15.95905 -15.80675 -15.48852 -14.99431 -14.83925 -14.46207 -14.31617 -14.21499 -13.93440 -13.55784 -13.46076 -13.12045 -13.01826 -12.87343 -12.76298 -12.56833 -12.51429 -12.36515 -12.22140 -11.90876 -11.66132 -11.41255 -11.27486 -11.09024 -11.07654 -11.02459 -10.96585 -10.81607 -10.51826 -9.95956 -9.85978 -9.57349 -9.10877 -9.09778 -8.79657 -8.30412 -6.55335 -6.25473 -3.96854 2.26467 2.49675 2.73336 2.84791 3.21007 3.23130 3.26743 3.35280 3.53208 4.04693 4.16505 4.21943 4.27096 4.35252 4.44853 4.47698 4.65117 4.73718 4.78633 4.79812 4.84111 4.97675 5.04117 5.06284 5.09883 5.20218 5.23708 5.33925 5.36777 5.42643 5.44202 5.46052 5.52089 5.58201 5.64697 5.68883 5.72569 5.79069 5.80227 5.81861 5.86536 5.95240 6.05751 6.44938 7.17873 7.51089 7.55711 7.81703 8.30976 8.43670 9.19834 10.81883 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.001559 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.505336 B =17961.128097 C =18102.695258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.141 4.141 7 C 0.541 3.459 8 O -0.540 6.540 9 N -0.624 5.624 10 C 0.130 3.870 11 C -0.194 4.194 12 H 0.125 0.875 13 C -0.181 4.181 14 H 0.121 0.879 15 C 0.132 3.868 16 C 0.135 3.865 17 H 0.143 0.857 18 N -0.709 5.709 19 C 0.538 3.462 20 O -0.511 6.511 21 C -0.154 4.154 22 S -0.057 6.057 23 C -0.538 4.538 24 H 0.072 0.928 25 C 0.075 3.925 26 N -0.867 5.867 27 Si 0.919 3.081 28 H -0.274 1.274 29 H -0.282 1.282 30 H -0.274 1.274 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.402 0.598 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.032 -8.758 -16.387 29.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.199 4.199 7 C 0.330 3.670 8 O -0.416 6.416 9 N -0.359 5.359 10 C 0.007 3.993 11 C -0.215 4.215 12 H 0.143 0.857 13 C -0.202 4.202 14 H 0.139 0.861 15 C 0.010 3.990 16 C 0.027 3.973 17 H 0.160 0.840 18 N -0.360 5.360 19 C 0.325 3.675 20 O -0.384 6.384 21 C -0.304 4.304 22 S 0.169 5.831 23 C -0.686 4.686 24 H 0.091 0.909 25 C -0.135 4.135 26 N -0.502 5.502 27 Si 0.745 3.255 28 H -0.199 1.199 29 H -0.208 1.208 30 H -0.199 1.199 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.236 0.764 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.308 -8.461 -14.676 29.629 hybrid contribution 2.205 0.368 -2.055 3.037 sum -22.103 -8.093 -16.731 28.879 Atomic orbital electron populations 1.21764 0.95650 1.01623 1.02001 1.21577 0.96109 0.96333 1.02211 1.21496 0.91962 0.97172 1.03450 1.21325 0.97810 0.92805 1.00827 0.89098 1.21766 1.01235 1.01248 0.95645 1.20379 0.78788 0.91440 0.76351 1.90705 1.56610 1.47122 1.47212 1.49326 1.21556 1.08322 1.56662 1.21904 0.85726 0.92473 0.99217 1.24954 0.98511 0.91993 1.06032 0.85701 1.24149 0.95545 0.97696 1.02793 0.86066 1.21732 0.89537 0.86133 1.01638 1.22257 0.81100 0.97986 0.95980 0.83992 1.45384 1.05995 1.75052 1.09616 1.20379 0.88829 0.74922 0.83362 1.90711 1.72837 1.47316 1.27530 1.23538 0.93215 1.04864 1.08818 1.85410 1.04962 1.94605 0.98098 1.22823 0.92580 1.57681 0.95529 0.90933 1.24988 0.99513 0.94557 0.94420 1.70005 1.35057 1.46379 0.98791 0.86219 0.82461 0.78915 0.77888 1.19925 1.20775 1.19925 0.92662 0.92696 0.92690 0.91630 0.91916 0.91661 0.90716 0.92258 0.91058 0.91738 0.90020 0.89453 0.89227 0.90288 0.76416 0.89004 0.88995 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.65 5.69 -26.73 -0.15 -0.80 16 3 C -0.10 -0.72 4.22 -26.73 -0.11 -0.83 16 4 C -0.11 -0.74 2.12 -91.77 -0.19 -0.93 16 5 H 0.09 0.50 7.14 -51.93 -0.37 0.13 16 6 C -0.14 -0.82 8.75 37.16 0.33 -0.50 16 7 C 0.54 5.52 6.93 -10.98 -0.08 5.44 16 8 O -0.54 -7.53 16.57 5.56 0.09 -7.44 16 9 N -0.62 -5.59 3.31 -169.05 -0.56 -6.15 16 10 C 0.13 0.92 6.45 -2.19 -0.01 0.90 16 11 C -0.19 -1.53 7.25 -86.76 -0.63 -2.16 16 12 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 13 C -0.18 -1.52 6.91 -89.22 -0.62 -2.13 16 14 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 15 C 0.13 1.19 6.86 -2.41 -0.02 1.18 16 16 C 0.13 1.40 6.19 -65.70 -0.41 0.99 16 17 H 0.14 1.70 7.40 -51.93 -0.38 1.32 16 18 N -0.71 -8.47 5.57 -51.65 -0.29 -8.76 16 19 C 0.54 9.29 7.85 -10.99 -0.09 9.21 16 20 O -0.51 -10.85 15.43 5.55 0.09 -10.77 16 21 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 22 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 23 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 24 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 25 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 26 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 27 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.30 6.73 -51.93 -0.35 -0.04 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.61 8.01 -51.93 -0.42 0.20 16 38 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 39 H 0.07 0.30 6.93 -51.93 -0.36 -0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.46 7.19 -51.93 -0.37 0.09 16 43 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 44 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 45 H 0.40 3.64 8.83 -40.82 -0.36 3.28 16 46 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 47 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -35.04 407.86 -10.28 -45.32 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.06 Total: -0.20 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.19 Total: -5.44 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.11 Total: -39.88 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.04 -10.28 -45.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579088020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.249 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds