Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47206 * 2 1 4 4 C 1.53009 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47170 * 305.00206 * 4 3 2 6 6 C 1.52996 * 109.46959 * 65.00266 * 4 3 2 7 7 C 1.50699 * 109.46790 * 184.99788 * 4 3 2 8 8 O 1.21281 * 120.00543 * 327.78466 * 7 4 3 9 9 N 1.34782 * 119.99927 * 147.77540 * 7 4 3 10 10 C 1.48147 * 127.83241 * 4.68129 * 9 7 4 11 11 C 1.54793 * 104.41610 * 140.36591 * 10 9 7 12 12 H 1.09001 * 118.33343 * 244.38631 * 11 10 9 13 13 C 1.54292 * 104.92161 * 24.16014 * 11 10 9 14 14 H 1.08994 * 121.81452 * 222.88674 * 13 11 10 15 15 C 1.48141 * 127.83844 * 184.99087 * 9 7 4 16 16 C 1.53000 * 61.49946 * 114.02108 * 13 11 10 17 17 H 1.09004 * 117.44082 * 251.43837 * 16 13 11 18 18 N 1.46497 * 117.44331 * 106.68916 * 16 13 11 19 19 C 1.34773 * 120.00091 * 154.99925 * 18 16 13 20 20 O 1.21286 * 120.00146 * 0.02562 * 19 18 16 21 21 C 1.50702 * 120.00353 * 180.02562 * 19 18 16 22 22 S 1.81000 * 109.47325 * 180.02562 * 21 19 18 23 23 C 1.76199 * 100.00030 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99639 * 359.97438 * 23 22 21 25 25 C 1.38800 * 120.00456 * 180.02562 * 23 22 21 26 26 N 1.31636 * 119.99284 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00279 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47188 * 60.00093 * 27 25 23 29 29 H 1.48501 * 109.46833 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46868 * 299.99815 * 27 25 23 31 31 H 1.08997 * 109.47071 * 60.00279 * 1 2 3 32 32 H 1.09006 * 109.47233 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46942 * 300.00264 * 1 2 3 34 34 H 1.08998 * 109.46942 * 239.99736 * 2 1 3 35 35 H 1.09007 * 109.46841 * 120.00469 * 2 1 3 36 36 H 1.09003 * 109.47062 * 60.00341 * 3 2 1 37 37 H 1.08995 * 109.47367 * 299.99665 * 3 2 1 38 38 H 1.09002 * 109.47021 * 172.80864 * 6 4 3 39 39 H 1.08997 * 109.47284 * 292.80852 * 6 4 3 40 40 H 1.09000 * 109.47447 * 52.80776 * 6 4 3 41 41 H 1.08996 * 110.40529 * 259.18966 * 10 9 7 42 42 H 1.09000 * 110.41026 * 21.62743 * 10 9 7 43 43 H 1.08996 * 110.41286 * 338.37784 * 15 9 7 44 44 H 1.09011 * 110.40498 * 100.69134 * 15 9 7 45 45 H 0.97001 * 119.99910 * 334.99988 * 18 16 13 46 46 H 1.08997 * 109.46984 * 300.00369 * 21 19 18 47 47 H 1.08998 * 109.46735 * 60.00107 * 21 19 18 48 48 H 0.96998 * 119.99793 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8426 6 6 4.0806 0.8325 -1.3064 7 6 4.0724 2.8577 0.1244 8 8 3.4370 3.7711 -0.3581 9 7 5.2277 3.1086 0.7716 10 6 6.1830 2.1285 1.3387 11 6 7.5774 2.7164 1.0129 12 1 8.2289 2.1599 0.3393 13 6 7.3407 4.2321 0.8479 14 1 7.8046 4.8018 0.0428 15 6 5.8273 4.4271 1.0828 16 6 8.1964 3.7503 2.0211 17 1 7.7662 3.8234 3.0200 18 7 9.6420 3.9731 1.9387 19 6 10.3766 4.0547 3.0657 20 8 9.8410 3.9432 4.1482 21 6 11.8636 4.2844 2.9810 22 16 12.5608 4.3448 4.6503 23 6 14.2583 4.6159 4.2632 24 1 14.5715 4.6923 3.2324 25 6 15.1930 4.7303 5.2829 26 7 14.8112 4.6367 6.5392 27 14 16.9927 5.0169 4.8724 28 1 17.1314 6.2864 4.1147 29 1 17.7793 5.1026 6.1291 30 1 17.4978 3.8902 4.0475 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6768 1.9562 -0.8900 38 1 5.1630 0.9479 -1.3628 39 1 3.8260 -0.2269 -1.3369 40 1 3.6164 1.3421 -2.1508 41 1 6.0459 2.0441 2.4167 42 1 6.0584 1.1564 0.8615 43 1 5.4340 5.1912 0.4124 44 1 5.6337 4.6972 2.1210 45 1 10.0705 4.0618 1.0730 46 1 12.3259 3.4697 2.4238 47 1 12.0569 5.2286 2.4718 48 1 15.4643 4.7169 7.2518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579088020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -76.271067 kcal Electronic energy + Delta-G solvation = -26134.880044 eV Core-core repulsion = 22315.530200 eV Total energy + Delta-G solvation = -3819.349844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67028 -40.61760 -39.42158 -36.90343 -35.82073 -34.57052 -33.64818 -32.69973 -30.61584 -29.56858 -27.69144 -27.60026 -27.04045 -24.31966 -22.68060 -21.85390 -21.79488 -21.17636 -19.96751 -19.78936 -18.40317 -17.87491 -17.76551 -16.86406 -16.68189 -16.48897 -16.37035 -16.13913 -16.01641 -15.05741 -14.88911 -14.82141 -14.61676 -14.53044 -14.05789 -14.00109 -13.84048 -13.55010 -13.51615 -13.26817 -13.15776 -13.06853 -12.85982 -12.82125 -12.66260 -12.62054 -12.15972 -11.95094 -11.90755 -11.76959 -11.74964 -11.44168 -11.25375 -11.11565 -11.05618 -10.67033 -10.26846 -9.87439 -9.77355 -8.65099 -8.33410 -6.11295 1.24669 1.44347 1.45024 1.47955 1.51950 1.56953 1.81022 2.16003 2.28784 2.51378 3.01011 3.29670 3.40337 3.47059 3.61620 3.71899 3.79888 3.90683 3.95121 3.98452 4.15201 4.28759 4.31657 4.33830 4.35238 4.40654 4.52362 4.59785 4.63602 4.71545 4.72614 4.79528 4.86118 4.90507 4.95586 4.99440 5.02139 5.08849 5.14518 5.21414 5.30649 5.41286 5.43113 5.44411 5.49015 6.20809 6.43979 6.45860 7.05249 7.08174 7.19199 8.75414 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.001559 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.505336 B =17961.128097 C =18102.695258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.101 4.101 5 H 0.113 0.887 6 C -0.138 4.138 7 C 0.535 3.465 8 O -0.587 6.587 9 N -0.623 5.623 10 C 0.126 3.874 11 C -0.169 4.169 12 H 0.146 0.854 13 C -0.166 4.166 14 H 0.135 0.865 15 C 0.126 3.874 16 C 0.108 3.892 17 H 0.122 0.878 18 N -0.683 5.683 19 C 0.542 3.458 20 O -0.560 6.560 21 C -0.130 4.130 22 S -0.149 6.149 23 C -0.548 4.548 24 H 0.084 0.916 25 C 0.015 3.985 26 N -0.911 5.911 27 Si 0.997 3.003 28 H -0.263 1.263 29 H -0.280 1.280 30 H -0.262 1.262 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.419 0.581 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.319 -10.338 -18.862 30.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.122 4.122 5 H 0.131 0.869 6 C -0.195 4.195 7 C 0.326 3.674 8 O -0.467 6.467 9 N -0.356 5.356 10 C 0.004 3.996 11 C -0.189 4.189 12 H 0.163 0.837 13 C -0.186 4.186 14 H 0.153 0.847 15 C 0.004 3.996 16 C 0.001 3.999 17 H 0.139 0.861 18 N -0.334 5.334 19 C 0.328 3.672 20 O -0.437 6.437 21 C -0.281 4.281 22 S 0.078 5.922 23 C -0.696 4.696 24 H 0.102 0.898 25 C -0.190 4.190 26 N -0.547 5.547 27 Si 0.818 3.182 28 H -0.188 1.188 29 H -0.205 1.205 30 H -0.186 1.186 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.257 0.743 46 H 0.132 0.868 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.603 -10.058 -17.209 30.893 hybrid contribution 1.832 0.874 -1.357 2.441 sum -21.771 -9.184 -18.565 30.050 Atomic orbital electron populations 1.21787 0.95823 1.02103 1.01571 1.21552 0.95961 0.94961 1.03188 1.21457 0.92274 0.98214 1.01921 1.21384 0.97500 0.90879 1.02435 0.86924 1.21770 1.01351 1.02216 0.94199 1.21039 0.78527 0.92347 0.75501 1.90682 1.57959 1.48742 1.49268 1.49399 1.21532 1.08669 1.56013 1.22098 0.84609 0.93094 0.99760 1.25040 0.98452 0.91759 1.03698 0.83672 1.24055 0.94469 0.98602 1.01515 0.84718 1.21747 0.90140 0.86373 1.01377 1.22248 0.79968 1.01583 0.96132 0.86065 1.44987 1.06534 1.73090 1.08808 1.20041 0.88294 0.74900 0.83946 1.90702 1.73373 1.50023 1.29585 1.23367 0.94298 1.06770 1.03664 1.85581 1.06223 1.94935 1.05451 1.23184 0.92865 1.57370 0.96165 0.89831 1.26097 1.04771 0.93997 0.94120 1.70174 1.36775 1.47716 1.00062 0.85028 0.75899 0.79393 0.77840 1.18755 1.20511 1.18608 0.93109 0.91716 0.93208 0.90531 0.90912 0.93042 0.92522 0.91722 0.88866 0.93105 0.89680 0.86648 0.90271 0.90404 0.74301 0.86825 0.87069 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.12 -1.02 5.69 30.59 0.17 -0.85 16 3 C -0.10 -1.34 4.22 30.59 0.13 -1.21 16 4 C -0.10 -1.22 2.12 -11.54 -0.02 -1.24 16 5 H 0.11 0.87 7.14 -2.39 -0.02 0.86 16 6 C -0.14 -1.25 8.75 71.98 0.63 -0.62 16 7 C 0.53 10.46 6.93 87.66 0.61 11.07 16 8 O -0.59 -16.69 16.57 -3.03 -0.05 -16.74 16 9 N -0.62 -10.21 3.31 -807.15 -2.67 -12.89 16 10 C 0.13 1.42 6.45 86.67 0.56 1.98 16 11 C -0.17 -2.13 7.25 -8.30 -0.06 -2.19 16 12 H 0.15 1.37 8.14 -2.39 -0.02 1.36 16 13 C -0.17 -2.43 6.91 -9.88 -0.07 -2.50 16 14 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 15 C 0.13 2.19 6.86 86.54 0.59 2.78 16 16 C 0.11 2.07 6.19 46.44 0.29 2.36 16 17 H 0.12 2.92 7.40 -2.38 -0.02 2.90 16 18 N -0.68 -14.92 5.57 -435.70 -2.43 -17.34 16 19 C 0.54 18.32 7.85 87.66 0.69 19.01 16 20 O -0.56 -24.29 15.43 -3.05 -0.05 -24.34 16 21 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 22 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 23 C -0.55 -30.51 9.50 67.95 0.65 -29.86 16 24 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 25 C 0.02 0.84 5.49 84.86 0.47 1.31 16 26 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 27 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 29 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 30 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.51 6.73 -2.39 -0.02 0.49 16 35 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.95 8.01 -2.39 -0.02 0.94 16 38 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 39 H 0.09 0.45 6.93 -2.39 -0.02 0.44 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 0.72 7.19 -2.39 -0.02 0.70 16 43 H 0.08 1.56 7.85 -2.39 -0.02 1.54 16 44 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.42 6.22 8.83 -92.71 -0.82 5.40 16 46 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 47 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 48 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.94 407.86 1.87 -78.07 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.13 Total: 17.57 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.78 Total: -5.05 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -4.81 Total: -85.03 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.10 Total: -41.08 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -79.94 1.87 -78.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579088020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.803 kcal (2) G-P(sol) polarization free energy of solvation -79.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds