Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32990 * 119.99944 * 2 1 4 4 C 1.50694 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.47103 * 119.99745 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00097 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99793 * 180.02562 * 5 3 2 8 8 C 1.46503 * 120.00149 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.46517 * 274.99868 * 8 7 5 10 10 C 1.53005 * 109.46496 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47436 * 60.00018 * 10 9 8 12 12 N 1.46496 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00289 * 275.00323 * 12 11 10 14 14 O 1.21284 * 119.99903 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00151 * 180.02562 * 13 12 11 16 16 S 1.80994 * 109.47037 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99944 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99953 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00022 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99895 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47453 * 89.99795 * 21 19 17 23 23 H 1.48503 * 109.47094 * 210.00014 * 21 19 17 24 24 H 1.48502 * 109.47168 * 329.99724 * 21 19 17 25 25 C 1.52997 * 109.46971 * 299.99850 * 11 10 9 26 26 C 1.52991 * 109.47524 * 154.99756 * 8 7 5 27 27 H 1.09002 * 109.47152 * 299.99804 * 1 2 3 28 28 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47113 * 59.99886 * 1 2 3 30 30 H 1.08003 * 119.99742 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47287 * 89.99715 * 4 3 2 32 32 H 1.09002 * 109.47474 * 209.99861 * 4 3 2 33 33 H 1.09006 * 109.47089 * 330.00110 * 4 3 2 34 34 H 0.97004 * 120.00071 * 359.97438 * 7 5 3 35 35 H 1.09004 * 109.47168 * 34.98972 * 8 7 5 36 36 H 1.08999 * 109.47306 * 299.99681 * 9 8 7 37 37 H 1.08994 * 109.47191 * 60.00253 * 9 8 7 38 38 H 1.09001 * 109.47653 * 299.99597 * 10 9 8 39 39 H 1.09007 * 109.46662 * 180.02562 * 10 9 8 40 40 H 1.08999 * 109.46994 * 59.99746 * 11 10 9 41 41 H 0.96997 * 119.99935 * 94.99908 * 12 11 10 42 42 H 1.08999 * 109.46727 * 299.99920 * 15 13 12 43 43 H 1.08997 * 109.46880 * 59.99360 * 15 13 12 44 44 H 0.97008 * 119.99933 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.47176 * 299.99784 * 25 11 10 46 46 H 1.08995 * 109.47240 * 179.97438 * 25 11 10 47 47 H 1.09000 * 109.47374 * 300.00223 * 26 8 7 48 48 H 1.09002 * 109.47488 * 59.99983 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3189 0.0011 9 6 6.2918 2.1926 1.4381 10 6 7.8218 2.1920 1.4381 11 6 8.3324 3.4993 0.8288 12 7 9.7974 3.4989 0.8293 13 6 10.4710 3.8978 1.9264 14 8 9.8644 4.2574 2.9131 15 6 11.9780 3.8979 1.9267 16 16 12.5809 4.4817 3.5303 17 6 14.3190 4.3820 3.2585 18 1 14.6980 4.0362 2.3082 19 6 15.2011 4.7479 4.2657 20 7 14.7392 5.1699 5.4239 21 14 17.0437 4.6429 3.9773 22 1 17.5322 5.9308 3.4227 23 1 17.7311 4.3655 5.2641 24 1 17.3327 3.5486 3.0159 25 6 7.8225 3.6256 -0.6081 26 6 6.2919 3.6264 -0.6080 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9354 -0.0004 31 1 1.2372 2.7712 1.0284 32 1 2.0074 3.2166 -0.5133 33 1 0.4659 2.3266 -0.5129 34 1 3.8319 3.1590 0.0007 35 1 6.1453 1.4772 -0.5886 36 1 5.9284 3.0342 2.0279 37 1 5.9285 1.2611 1.8720 38 1 8.1849 1.3502 0.8485 39 1 8.1851 2.1015 2.4619 40 1 7.9694 4.3411 1.4185 41 1 10.2825 3.2116 0.0401 42 1 12.3414 2.8860 1.7479 43 1 12.3414 4.5588 1.1398 44 1 15.3557 5.4259 6.1277 45 1 8.1854 2.7838 -1.1978 46 1 8.1858 4.5571 -1.0421 47 1 5.9286 3.7165 -1.6317 48 1 5.9286 4.4681 -0.0182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579257949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -86.269670 kcal Electronic energy + Delta-G solvation = -26357.596232 eV Core-core repulsion = 22537.812816 eV Total energy + Delta-G solvation = -3819.783416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53764 -39.53285 -37.96012 -35.92250 -35.01999 -33.03749 -32.41734 -31.06982 -30.33785 -29.38532 -27.61531 -26.56484 -25.46294 -23.15836 -23.04783 -21.34188 -20.47414 -20.21205 -18.83783 -17.81596 -17.43068 -16.67804 -16.32201 -16.25334 -15.45848 -15.17006 -14.90692 -14.79474 -14.44216 -14.18826 -14.07422 -13.98016 -13.79378 -13.38402 -13.17609 -13.08314 -12.87776 -12.76882 -12.61054 -12.53310 -12.45849 -12.04603 -11.79370 -11.73482 -11.48973 -11.40468 -11.05543 -11.01370 -10.76297 -10.68286 -10.64260 -10.14887 -9.80082 -9.53991 -9.35924 -9.26290 -9.05922 -8.83861 -8.22251 -6.48635 -6.20698 -3.91065 0.98351 2.81781 2.96608 3.06751 3.11977 3.23102 3.28903 3.33444 3.73233 4.21554 4.26560 4.38791 4.43227 4.44130 4.70215 4.77481 4.81675 4.83641 4.97555 4.99343 5.11940 5.13977 5.14539 5.16556 5.20652 5.24654 5.26950 5.37093 5.45282 5.47435 5.50178 5.64535 5.72249 5.78627 5.86626 5.91264 5.97529 6.01478 6.07809 6.15295 6.17098 6.18368 6.29651 6.70177 7.20482 7.60581 7.75142 7.93694 8.36228 8.64866 9.24690 10.86723 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036752 B = 0.001612 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.675453 B =17367.637369 C =17519.396292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.195 4.195 4 C -0.118 4.118 5 C 0.553 3.447 6 O -0.543 6.543 7 N -0.723 5.723 8 C 0.143 3.857 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.146 3.854 12 N -0.735 5.735 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.122 4.122 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.916 -5.619 -16.461 32.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 C -0.198 4.198 4 C -0.175 4.175 5 C 0.342 3.658 6 O -0.422 6.422 7 N -0.374 5.374 8 C 0.039 3.961 9 C -0.164 4.164 10 C -0.167 4.167 11 C 0.041 3.959 12 N -0.389 5.389 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.160 4.160 26 C -0.160 4.160 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.433 -5.682 -14.622 32.474 hybrid contribution 1.976 -0.233 -1.653 2.586 sum -26.458 -5.914 -16.275 31.620 Atomic orbital electron populations 1.21003 0.92070 1.03166 1.02601 1.23601 0.96310 0.98006 0.91380 1.21433 0.92707 0.96843 1.08778 1.20825 1.00098 0.93929 1.02611 1.18406 0.87742 0.83735 0.75921 1.90798 1.70088 1.31237 1.50030 1.46027 1.07306 1.08612 1.75434 1.21078 0.78790 0.98988 0.97248 1.21862 0.95616 1.02826 0.96049 1.21899 0.94491 0.97663 1.02620 1.20916 0.80240 0.98680 0.96097 1.46065 1.06314 1.69599 1.16905 1.20308 0.89557 0.75863 0.82384 1.90696 1.69908 1.45722 1.32837 1.23539 0.93615 1.05314 1.07998 1.85386 1.03963 1.85034 1.09008 1.22874 0.91116 1.51505 1.02894 0.90945 1.24987 0.99604 0.94540 0.94425 1.70022 1.35328 1.41184 1.03772 0.86171 0.82945 0.78575 0.77826 1.20279 1.20750 1.19703 1.21742 0.94754 1.03121 0.96411 1.21741 0.95743 0.97013 1.01475 0.90668 0.91342 0.90625 0.85591 0.90838 0.91807 0.90881 0.76518 0.89237 0.91453 0.91210 0.91619 0.90615 0.89367 0.76901 0.89252 0.89273 0.92200 0.91040 0.90558 0.90875 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.51 8.91 36.01 0.32 -0.18 16 2 C -0.07 -0.50 9.84 -36.13 -0.36 -0.85 16 3 C -0.19 -1.41 6.00 -102.85 -0.62 -2.03 16 4 C -0.12 -0.48 9.14 36.00 0.33 -0.15 16 5 C 0.55 5.55 7.71 -12.66 -0.10 5.46 16 6 O -0.54 -7.62 15.88 5.27 0.08 -7.54 16 7 N -0.72 -5.59 5.02 -54.99 -0.28 -5.86 16 8 C 0.14 1.24 2.45 -67.93 -0.17 1.07 16 9 C -0.12 -1.29 5.50 -26.73 -0.15 -1.44 16 10 C -0.13 -1.49 5.49 -26.73 -0.15 -1.64 16 11 C 0.15 1.66 2.45 -67.93 -0.17 1.49 16 12 N -0.74 -9.64 5.08 -53.81 -0.27 -9.91 16 13 C 0.53 9.87 7.81 -10.98 -0.09 9.78 16 14 O -0.52 -11.65 15.52 5.55 0.09 -11.57 16 15 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.12 -0.95 5.39 -26.71 -0.14 -1.10 16 26 C -0.12 -0.81 5.39 -26.71 -0.14 -0.96 16 27 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.22 7.40 -51.93 -0.38 -0.16 16 30 H 0.13 1.03 7.49 -52.48 -0.39 0.63 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.20 6.71 -51.93 -0.35 -0.15 16 33 H 0.07 0.22 6.49 -51.93 -0.34 -0.12 16 34 H 0.40 2.04 6.70 -40.82 -0.27 1.77 16 35 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 41 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -36.72 403.88 -9.71 -46.43 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.91 Total: 1.77 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.00 Total: -6.47 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.18 Total: -41.32 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.17 Total: -19.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.72 -9.71 -46.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579257949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.842 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds