Wall clock time and date at job start Sat Apr 11 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 119.99770 * 2 1 4 4 C 1.50705 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47101 * 120.00163 * 179.97438 * 3 2 1 6 6 O 1.21613 * 119.99700 * 335.43475 * 5 3 2 7 7 N 1.34778 * 120.00167 * 155.44332 * 5 3 2 8 8 C 1.46929 * 120.62924 * 173.59977 * 7 5 3 9 9 C 1.53185 * 108.77780 * 126.38724 * 8 7 5 10 10 C 1.53043 * 109.31546 * 54.63291 * 9 8 7 11 11 C 1.53039 * 109.53454 * 298.63618 * 10 9 8 12 12 H 1.09000 * 109.50027 * 301.37662 * 11 10 9 13 13 N 1.46503 * 109.49835 * 181.31638 * 11 10 9 14 14 C 1.46502 * 119.99596 * 300.06290 * 13 11 10 15 15 C 1.34773 * 120.00194 * 120.06010 * 13 11 10 16 16 O 1.21275 * 119.99866 * 0.02562 * 15 13 11 17 17 C 1.50705 * 120.00054 * 179.97438 * 15 13 11 18 18 S 1.81001 * 109.47100 * 180.02562 * 17 15 13 19 19 C 1.76203 * 99.99797 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99917 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99850 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99992 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00045 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47180 * 89.99620 * 23 21 19 25 25 H 1.48503 * 109.47021 * 210.00099 * 23 21 19 26 26 H 1.48497 * 109.46771 * 329.99854 * 23 21 19 27 27 C 1.46929 * 120.60617 * 353.56855 * 7 5 3 28 28 H 1.08992 * 109.47469 * 300.00642 * 1 2 3 29 29 H 1.08994 * 109.47096 * 60.01061 * 1 2 3 30 30 H 1.09010 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00207 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47432 * 277.19621 * 4 3 2 33 33 H 1.08999 * 109.46645 * 37.20054 * 4 3 2 34 34 H 1.08998 * 109.46769 * 157.19708 * 4 3 2 35 35 H 1.09002 * 109.58634 * 6.59531 * 8 7 5 36 36 H 1.09003 * 109.69864 * 246.24603 * 8 7 5 37 37 H 1.09003 * 109.50044 * 294.67955 * 9 8 7 38 38 H 1.09000 * 109.49976 * 174.58507 * 9 8 7 39 39 H 1.08994 * 109.46185 * 178.61842 * 10 9 8 40 40 H 1.09000 * 109.45110 * 58.64426 * 10 9 8 41 41 H 1.08994 * 109.47292 * 269.99597 * 14 13 11 42 42 H 1.09001 * 109.47381 * 30.00250 * 14 13 11 43 43 H 1.09004 * 109.46856 * 150.00076 * 14 13 11 44 44 H 1.09001 * 109.46779 * 60.00435 * 17 15 13 45 45 H 1.09001 * 109.47175 * 300.00477 * 17 15 13 46 46 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.56250 * 113.80652 * 27 7 5 48 48 H 1.08999 * 109.61440 * 353.38257 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4183 2.4569 -0.0006 5 6 3.6429 1.1519 0.0006 6 8 4.2508 0.1941 0.4389 7 7 4.3170 2.2134 -0.4845 8 6 5.7793 2.2904 -0.3641 9 6 6.3762 2.5354 -1.7534 10 6 5.7301 3.7783 -2.3699 11 6 4.2249 3.5492 -2.5245 12 1 4.0524 2.6762 -3.1540 13 7 3.6120 4.7271 -3.1436 14 6 3.7064 6.0328 -2.4860 15 6 2.9615 4.6095 -4.3181 16 8 2.8831 3.5285 -4.8622 17 6 2.3306 5.8211 -4.9546 18 16 1.5387 5.3420 -6.5101 19 6 0.9034 6.9032 -7.0236 20 1 1.0644 7.7791 -6.4126 21 6 0.1952 7.0071 -8.2127 22 7 -0.0015 5.9394 -8.9571 23 14 -0.4777 8.6624 -8.7574 24 1 0.5359 9.3594 -9.5890 25 1 -1.7143 8.4563 -9.5534 26 1 -0.7898 9.4872 -7.5627 27 6 3.6029 3.3151 -1.1442 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5136 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 2.0470 -0.9352 0.0004 32 1 1.1255 2.7070 -1.0203 33 1 0.5276 2.3623 0.6204 34 1 2.0569 3.2453 0.3978 35 1 6.1626 1.3526 0.0382 36 1 6.0506 3.1109 0.3002 37 1 6.1836 1.6716 -2.3897 38 1 7.4516 2.6903 -1.6652 39 1 6.1707 3.9691 -3.3484 40 1 5.9019 4.6367 -1.7206 41 1 2.8546 6.1661 -1.8191 42 1 4.6304 6.0836 -1.9099 43 1 3.7044 6.8202 -3.2397 44 1 3.0986 6.5688 -5.1527 45 1 1.5829 6.2381 -4.2800 46 1 -0.4967 6.0120 -9.7880 47 1 3.6941 4.2204 -0.5440 48 1 2.5508 3.0536 -1.2571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580225949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:57 Heat of formation + Delta-G solvation = -38.433499 kcal Electronic energy + Delta-G solvation = -27991.424494 eV Core-core repulsion = 24173.715410 eV Total energy + Delta-G solvation = -3817.709084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87254 -39.52998 -37.54746 -35.99766 -35.13515 -33.04817 -32.45859 -31.24962 -29.54520 -28.46598 -27.13301 -26.82306 -25.52284 -25.24963 -23.31181 -21.85996 -20.04742 -19.24429 -18.55196 -17.70611 -17.02278 -16.75359 -16.46671 -15.92574 -15.46405 -15.29881 -15.06634 -14.83308 -14.41944 -14.19636 -14.07981 -13.77304 -13.59273 -13.29661 -13.22402 -13.09917 -13.02005 -12.74691 -12.65154 -12.53446 -12.36637 -12.12195 -11.98179 -11.59457 -11.56484 -11.18404 -11.09388 -11.06661 -11.02484 -10.79312 -10.76010 -9.98177 -9.84094 -9.43297 -9.33083 -9.09689 -9.00883 -8.48469 -8.26470 -6.53921 -6.24697 -3.95729 1.20398 2.53517 2.93293 2.99876 3.01507 3.19857 3.23840 3.27881 3.55561 4.17105 4.26924 4.43855 4.52781 4.63837 4.68923 4.76619 4.89329 4.93398 4.95404 5.00481 5.04428 5.10514 5.18708 5.20932 5.24214 5.33776 5.38802 5.42011 5.47448 5.49705 5.56375 5.58716 5.63040 5.66847 5.70364 5.78806 5.83881 5.93787 6.06462 6.08167 6.10221 6.23803 6.34451 6.56513 7.14789 7.44254 7.56425 7.95270 8.31911 8.47767 9.20629 10.82651 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.002679 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.357872 B =10447.282880 C =11559.552686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.121 4.121 5 C 0.561 3.439 6 O -0.546 6.546 7 N -0.604 5.604 8 C 0.109 3.891 9 C -0.131 4.131 10 C -0.129 4.129 11 C 0.127 3.873 12 H 0.106 0.894 13 N -0.618 5.618 14 C 0.076 3.924 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.149 4.149 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.071 3.929 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.071 0.929 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 -3.760 21.175 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.177 4.177 5 C 0.352 3.648 6 O -0.425 6.425 7 N -0.337 5.337 8 C -0.013 4.013 9 C -0.170 4.170 10 C -0.168 4.168 11 C 0.022 3.978 12 H 0.124 0.876 13 N -0.354 5.354 14 C -0.067 4.067 15 C 0.322 3.678 16 O -0.387 6.387 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.053 4.053 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.669 -5.925 20.429 22.611 hybrid contribution -0.180 2.573 0.209 2.588 sum 7.489 -3.352 20.638 22.210 Atomic orbital electron populations 1.21007 0.91871 1.03201 1.02843 1.23529 0.96488 0.97529 0.91531 1.21340 0.92519 0.96937 1.08929 1.21179 1.00010 0.94234 1.02298 1.18478 0.87839 0.81474 0.77009 1.90765 1.70138 1.33662 1.47960 1.47860 1.07374 1.20636 1.57832 1.21639 0.79266 1.03227 0.97141 1.21886 1.00153 0.98631 0.96310 1.21907 0.94881 0.98090 1.01913 1.21316 0.92090 0.90391 0.93997 0.87622 1.47834 1.56490 1.08547 1.22578 1.21794 1.01662 0.84788 0.98504 1.20404 0.77183 0.90628 0.79565 1.90700 1.57956 1.28573 1.61495 1.23557 1.03098 0.98430 1.04908 1.85426 1.67792 1.14545 1.15726 1.22849 1.40774 0.94695 1.10041 0.90938 1.24992 0.95419 0.97714 0.95427 1.70020 1.38615 1.28392 1.13202 0.86172 0.78434 0.82229 0.78694 1.20274 1.20748 1.19682 1.23031 0.99710 0.89803 0.92729 0.90636 0.90322 0.91342 0.85899 0.89926 0.91048 0.91124 0.88815 0.91425 0.91067 0.90222 0.90874 0.91423 0.92624 0.91261 0.90428 0.89205 0.89179 0.92164 0.91117 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.00 36.01 0.32 -0.64 16 2 C -0.07 -0.70 9.81 -36.13 -0.35 -1.05 16 3 C -0.19 -2.06 5.65 -102.84 -0.58 -2.64 16 4 C -0.12 -1.00 7.36 36.01 0.27 -0.73 16 5 C 0.56 7.12 7.46 -12.66 -0.09 7.03 16 6 O -0.55 -8.55 15.90 5.27 0.08 -8.47 16 7 N -0.60 -6.46 2.97 -174.16 -0.52 -6.97 16 8 C 0.11 1.01 6.44 -3.71 -0.02 0.98 16 9 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 10 C -0.13 -1.22 5.12 -26.69 -0.14 -1.35 16 11 C 0.13 1.47 2.67 -67.81 -0.18 1.29 16 12 H 0.11 1.58 6.90 -51.93 -0.36 1.22 16 13 N -0.62 -7.87 2.76 -173.79 -0.48 -8.35 16 14 C 0.08 0.68 9.21 59.85 0.55 1.23 16 15 C 0.53 9.55 7.69 -10.98 -0.08 9.46 16 16 O -0.51 -11.27 15.19 5.56 0.08 -11.19 16 17 C -0.15 -2.88 4.71 36.01 0.17 -2.71 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 20 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 23 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.07 0.68 4.06 -3.71 -0.02 0.67 16 28 H 0.08 0.46 7.42 -51.93 -0.39 0.08 16 29 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.12 1.29 7.70 -52.49 -0.40 0.88 16 32 H 0.08 0.72 6.80 -51.93 -0.35 0.37 16 33 H 0.07 0.49 6.79 -51.93 -0.35 0.13 16 34 H 0.07 0.53 6.21 -51.93 -0.32 0.21 16 35 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.52 6.72 -51.93 -0.35 0.17 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.47 6.45 -51.93 -0.33 0.14 16 43 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 44 H 0.09 1.60 7.40 -51.92 -0.38 1.22 16 45 H 0.09 1.59 8.11 -51.91 -0.42 1.17 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.07 0.56 7.38 -51.93 -0.38 0.17 16 48 H 0.12 1.21 3.14 -52.71 -0.17 1.04 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -35.37 389.27 -9.00 -44.37 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.41 Total: 0.02 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.12 Total: -2.37 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.26 Total: -40.35 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.37 -9.00 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580225949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.941 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds