Wall clock time and date at job start Sat Apr 11 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 120.00152 * 2 1 4 4 C 1.50706 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.47098 * 120.00519 * 180.02562 * 3 2 1 6 6 O 1.21615 * 120.00044 * 262.08101 * 5 3 2 7 7 N 1.34775 * 119.99843 * 82.07459 * 5 3 2 8 8 C 1.46918 * 120.63478 * 5.52660 * 7 5 3 9 9 C 1.53191 * 108.77914 * 233.58807 * 8 7 5 10 10 C 1.53044 * 109.30975 * 305.36349 * 9 8 7 11 11 C 1.53038 * 109.53848 * 61.36312 * 10 9 8 12 12 H 1.09006 * 109.49153 * 58.62130 * 11 10 9 13 13 N 1.46495 * 109.49626 * 178.68008 * 11 10 9 14 14 C 1.46503 * 119.99869 * 60.00747 * 13 11 10 15 15 C 1.34776 * 120.00127 * 240.00227 * 13 11 10 16 16 O 1.21279 * 120.00076 * 0.02562 * 15 13 11 17 17 C 1.50704 * 120.00283 * 180.02562 * 15 13 11 18 18 S 1.80990 * 109.47520 * 180.02562 * 17 15 13 19 19 C 1.76202 * 100.00351 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99816 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99966 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99725 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47008 * 89.99745 * 23 21 19 25 25 H 1.48492 * 109.46947 * 209.99935 * 23 21 19 26 26 H 1.48496 * 109.46796 * 329.99994 * 23 21 19 27 27 C 1.46927 * 120.62857 * 185.24932 * 7 5 3 28 28 H 1.09001 * 109.47174 * 60.00710 * 1 2 3 29 29 H 1.09007 * 109.46693 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46877 * 299.99959 * 1 2 3 31 31 H 1.07998 * 120.00392 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46876 * 84.58178 * 4 3 2 33 33 H 1.08996 * 109.47418 * 204.58430 * 4 3 2 34 34 H 1.09001 * 109.46676 * 324.58581 * 4 3 2 35 35 H 1.09004 * 109.58787 * 353.37456 * 8 7 5 36 36 H 1.09004 * 109.58839 * 113.79738 * 8 7 5 37 37 H 1.08990 * 109.50021 * 65.31436 * 9 8 7 38 38 H 1.09003 * 109.49664 * 185.41632 * 9 8 7 39 39 H 1.08998 * 109.46132 * 181.38831 * 10 9 8 40 40 H 1.09005 * 109.45826 * 301.34389 * 10 9 8 41 41 H 1.08996 * 109.46950 * 89.99752 * 14 13 11 42 42 H 1.09007 * 109.47064 * 209.99612 * 14 13 11 43 43 H 1.09000 * 109.47130 * 329.99491 * 14 13 11 44 44 H 1.09003 * 109.46849 * 300.00353 * 17 15 13 45 45 H 1.09000 * 109.47160 * 59.99810 * 17 15 13 46 46 H 0.97005 * 120.00090 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.58700 * 246.20489 * 27 7 5 48 48 H 1.09007 * 109.58704 * 6.62514 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1519 -0.0006 6 8 4.2515 1.2968 1.0424 7 7 4.3164 0.9912 -1.1569 8 6 3.6005 0.9359 -2.4387 9 6 4.0113 -0.3412 -3.1783 10 6 5.5357 -0.3830 -3.3075 11 6 6.1670 -0.4077 -1.9136 12 1 5.8054 -1.2781 -1.3659 13 7 7.6249 -0.4796 -2.0383 14 6 8.3534 0.5819 -2.7375 15 6 8.2959 -1.5221 -1.5098 16 8 7.6928 -2.4010 -0.9313 17 6 9.7957 -1.5957 -1.6376 18 16 10.3967 -3.1016 -0.8332 19 6 12.1262 -2.9360 -1.1267 20 1 12.5028 -2.0794 -1.6658 21 6 13.0044 -3.9065 -0.6649 22 7 12.5454 -4.9503 -0.0074 23 14 14.8381 -3.7306 -0.9754 24 1 15.4612 -2.9860 0.1482 25 1 15.4541 -5.0778 -1.0785 26 1 15.0564 -2.9881 -2.2428 27 6 5.7810 0.8742 -1.1602 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0471 -0.9353 0.0004 32 1 1.1524 2.7232 1.0223 33 1 2.0462 3.2387 -0.4280 34 1 0.5117 2.3526 -0.5964 35 1 2.5258 0.9231 -2.2568 36 1 3.8609 1.8066 -3.0406 37 1 3.6697 -1.2117 -2.6185 38 1 3.5618 -0.3471 -4.1713 39 1 5.8293 -1.2786 -3.8551 40 1 5.8789 0.5004 -3.8460 41 1 8.6350 1.3584 -2.0264 42 1 9.2509 0.1658 -3.1954 43 1 7.7165 1.0111 -3.5109 44 1 10.0700 -1.6134 -2.6924 45 1 10.2443 -0.7246 -1.1602 46 1 13.1593 -5.6284 0.3157 47 1 6.2156 1.7399 -1.6598 48 1 6.1456 0.8206 -0.1343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580225950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:00 Heat of formation + Delta-G solvation = -56.655505 kcal Electronic energy + Delta-G solvation = -27555.942655 eV Core-core repulsion = 23737.443406 eV Total energy + Delta-G solvation = -3818.499249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75425 -39.49550 -37.54345 -36.02204 -35.16757 -32.70200 -32.42144 -31.16305 -29.75731 -28.56576 -27.06421 -26.72293 -25.49058 -25.34201 -23.32920 -21.91254 -20.29154 -19.21894 -18.43339 -17.65801 -17.23147 -16.74249 -16.38922 -15.97671 -15.48936 -15.24506 -14.79834 -14.70750 -14.53062 -14.24772 -14.07994 -13.97918 -13.72059 -13.26944 -13.06866 -13.02217 -12.96160 -12.88332 -12.72588 -12.53930 -12.42349 -12.32942 -11.98780 -11.73268 -11.64693 -11.37996 -11.18572 -11.06076 -11.01814 -10.89929 -10.75022 -10.09629 -9.80269 -9.38203 -9.29885 -9.09356 -9.05712 -8.47404 -8.21810 -6.49419 -6.20725 -3.91429 1.42436 2.34251 2.57528 3.00031 3.06121 3.22983 3.27032 3.30979 3.60659 4.12276 4.20859 4.47506 4.48979 4.52941 4.60922 4.71759 4.84724 4.92670 4.95112 5.00739 5.05460 5.10079 5.13429 5.14397 5.19419 5.28385 5.32971 5.37027 5.43426 5.47953 5.48933 5.54738 5.55905 5.64852 5.69981 5.73929 5.87730 5.94966 6.00922 6.06244 6.12729 6.13980 6.22934 6.63781 7.07803 7.49204 7.60289 7.89695 8.35899 8.53230 9.24405 10.86689 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023035 B = 0.002188 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.250670 B =12791.815396 C =13112.620341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C -0.167 4.167 4 C -0.105 4.105 5 C 0.558 3.442 6 O -0.531 6.531 7 N -0.606 5.606 8 C 0.107 3.893 9 C -0.132 4.132 10 C -0.129 4.129 11 C 0.130 3.870 12 H 0.105 0.895 13 N -0.619 5.619 14 C 0.077 3.923 15 C 0.535 3.465 16 O -0.514 6.514 17 C -0.149 4.149 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.105 3.895 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.071 0.929 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.013 16.404 -9.192 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.135 4.135 3 C -0.170 4.170 4 C -0.162 4.162 5 C 0.346 3.654 6 O -0.407 6.407 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.171 4.171 10 C -0.168 4.168 11 C 0.025 3.975 12 H 0.123 0.877 13 N -0.355 5.355 14 C -0.067 4.067 15 C 0.323 3.677 16 O -0.387 6.387 17 C -0.299 4.299 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.019 4.019 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.511 15.005 -7.670 29.745 hybrid contribution 2.074 1.142 -0.981 2.563 sum -22.437 16.147 -8.652 28.966 Atomic orbital electron populations 1.20889 0.91918 1.02953 1.02341 1.23288 0.96624 0.96866 0.96745 1.21338 0.92415 0.97240 1.05969 1.20697 0.99336 0.93248 1.02882 1.18629 0.87845 0.75744 0.83167 1.90846 1.69799 1.48632 1.31400 1.48062 1.07014 1.72286 1.06575 1.21792 0.97417 0.98278 0.84063 1.21900 0.95971 0.98137 1.01068 1.21907 0.94873 1.03083 0.96920 1.21353 0.80490 0.99287 0.96393 0.87658 1.47818 1.05955 1.23859 1.57855 1.21790 0.97423 0.90698 0.96765 1.20400 0.89582 0.80495 0.77240 1.90695 1.69578 1.37646 1.40825 1.23550 0.93358 1.07521 1.05500 1.85426 1.04952 1.21094 1.72054 1.22850 0.91672 1.11243 1.42504 0.90936 1.24997 0.99577 0.94479 0.94571 1.70020 1.35434 1.09886 1.34915 0.86165 0.82928 0.77660 0.78729 1.20259 1.20761 1.19702 1.22027 0.79274 0.97367 1.03219 0.90921 0.91497 0.91029 0.86637 0.90650 0.91876 0.90752 0.89270 0.91112 0.91010 0.90090 0.90761 0.91337 0.92634 0.90414 0.91278 0.89187 0.89168 0.92185 0.91108 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 8.98 36.01 0.32 -0.29 16 2 C -0.12 -0.89 9.62 -36.13 -0.35 -1.24 16 3 C -0.17 -1.48 3.87 -102.84 -0.40 -1.88 16 4 C -0.10 -0.66 9.45 36.01 0.34 -0.32 16 5 C 0.56 6.96 7.04 -12.67 -0.09 6.87 16 6 O -0.53 -9.13 16.54 5.26 0.09 -9.04 16 7 N -0.61 -6.30 2.97 -173.90 -0.52 -6.81 16 8 C 0.11 0.72 6.35 -3.72 -0.02 0.70 16 9 C -0.13 -0.91 6.08 -26.61 -0.16 -1.07 16 10 C -0.13 -1.16 5.12 -26.69 -0.14 -1.30 16 11 C 0.13 1.62 2.69 -67.59 -0.18 1.44 16 12 H 0.11 1.66 6.90 -51.93 -0.36 1.31 16 13 N -0.62 -8.72 2.77 -173.54 -0.48 -9.20 16 14 C 0.08 0.78 9.21 59.85 0.55 1.33 16 15 C 0.53 10.32 7.69 -10.98 -0.08 10.24 16 16 O -0.51 -12.00 15.19 5.56 0.08 -11.92 16 17 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 23 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.10 1.23 5.79 -3.49 -0.02 1.21 16 28 H 0.07 0.25 7.41 -51.93 -0.38 -0.13 16 29 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 31 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.07 0.30 6.71 -51.93 -0.35 -0.05 16 35 H 0.09 0.49 6.07 -51.93 -0.32 0.17 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.51 6.72 -51.93 -0.35 0.16 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 43 H 0.07 0.52 6.45 -51.93 -0.34 0.18 16 44 H 0.09 1.68 7.40 -51.91 -0.38 1.30 16 45 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 48 H 0.10 1.46 7.04 -51.92 -0.37 1.09 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -37.34 397.85 -8.94 -46.28 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.75 Total: -2.02 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 0.14 Total: -0.23 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.26 Total: -41.67 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.34 -8.94 -46.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580225950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.374 kcal (2) G-P(sol) polarization free energy of solvation -37.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds