Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47606 * 2 1 4 4 H 1.09005 * 110.05429 * 306.70626 * 3 2 1 5 5 C 1.54270 * 110.03335 * 68.11670 * 3 2 1 6 6 C 1.54886 * 104.19491 * 142.89620 * 5 3 2 7 7 C 1.55001 * 102.75647 * 322.04787 * 6 5 3 8 8 C 1.53878 * 110.03739 * 185.28526 * 3 2 1 9 9 H 1.08993 * 110.02773 * 121.43017 * 8 3 2 10 10 C 1.50701 * 110.02748 * 0.04609 * 8 3 2 11 11 O 1.21272 * 120.00329 * 273.61699 * 10 8 3 12 12 N 1.34784 * 119.99658 * 93.61846 * 10 8 3 13 13 C 1.46500 * 119.99798 * 179.97438 * 12 10 8 14 14 C 1.53943 * 113.74166 * 251.67583 * 13 12 10 15 15 N 1.47575 * 86.11740 * 222.05004 * 14 13 12 16 16 C 1.34782 * 134.48999 * 204.64272 * 15 14 13 17 17 O 1.21285 * 119.99819 * 179.97438 * 16 15 14 18 18 C 1.50691 * 120.00162 * 359.97438 * 16 15 14 19 19 S 1.81008 * 109.47288 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00223 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99470 * 359.97438 * 20 19 18 22 22 C 1.38787 * 119.99950 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00187 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46606 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47194 * 119.99591 * 24 22 20 27 27 H 1.48494 * 109.47450 * 240.00035 * 24 22 20 28 28 C 1.47576 * 91.01376 * 24.63980 * 15 14 13 29 29 H 1.08996 * 109.47510 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47253 * 300.00360 * 1 2 3 31 31 H 1.08999 * 109.46702 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.47253 * 239.99640 * 2 1 3 33 33 H 1.09007 * 109.47067 * 120.00212 * 2 1 3 34 34 H 1.09000 * 110.48537 * 261.57840 * 5 3 2 35 35 H 1.09005 * 110.48463 * 24.08288 * 5 3 2 36 36 H 1.08997 * 110.75474 * 80.37846 * 6 5 3 37 37 H 1.09001 * 110.75418 * 203.55730 * 6 5 3 38 38 H 1.08996 * 110.50895 * 279.29389 * 7 6 5 39 39 H 1.09006 * 110.52674 * 156.61278 * 7 6 5 40 40 H 0.96999 * 119.99544 * 359.97438 * 12 10 8 41 41 H 1.09002 * 112.94256 * 23.40872 * 13 12 10 42 42 H 1.09000 * 113.77072 * 336.35184 * 14 13 12 43 43 H 1.08996 * 113.77195 * 107.74185 * 14 13 12 44 44 H 1.09004 * 109.47356 * 299.99909 * 18 16 15 45 45 H 1.08999 * 109.47524 * 59.99826 * 18 16 15 46 46 H 0.97000 * 119.99820 * 179.97438 * 23 22 20 47 47 H 1.09011 * 113.76675 * 221.05877 * 28 15 14 48 48 H 1.08998 * 113.87258 * 89.68220 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5877 1.9989 -0.8209 5 6 1.7070 2.1208 1.3449 6 6 2.9368 3.0173 1.6330 7 6 4.1189 2.1469 1.1354 8 6 3.5730 1.4595 -0.1332 9 1 3.8645 2.0242 -1.0187 10 6 4.0990 0.0502 -0.2236 11 8 4.3398 -0.5733 0.7882 12 7 4.3017 -0.5173 -1.4293 13 6 4.8135 -1.8871 -1.5173 14 6 6.2705 -1.9742 -2.0067 15 7 5.8215 -3.1166 -2.8259 16 6 6.4314 -4.1932 -3.3603 17 8 5.7908 -4.9934 -4.0086 18 6 7.9091 -4.4026 -3.1524 19 16 8.4264 -5.9231 -3.9871 20 6 10.1436 -5.9202 -3.5919 21 1 10.5591 -5.1209 -2.9962 22 6 10.9619 -6.9449 -4.0462 23 7 10.4552 -7.9193 -4.7718 24 14 12.7825 -6.9415 -3.6279 25 1 13.0993 -5.7457 -2.8063 26 1 13.1170 -8.1697 -2.8630 27 1 13.5783 -6.9067 -4.8811 28 6 4.4366 -2.6067 -2.8249 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.8058 2.7271 1.2535 35 1 1.5849 1.3736 2.1291 36 1 2.8773 3.9476 1.0682 37 1 3.0254 3.2201 2.7003 38 1 4.3884 1.4039 1.8859 39 1 4.9776 2.7723 0.8908 40 1 4.1087 -0.0186 -2.2386 41 1 4.6143 -2.4736 -0.6203 42 1 6.5895 -1.1120 -2.5924 43 1 6.9808 -2.2457 -1.2258 44 1 8.4579 -3.5566 -3.5664 45 1 8.1180 -4.4841 -2.0857 46 1 11.0273 -8.6353 -5.0896 47 1 3.6826 -3.3836 -2.6972 48 1 4.2149 -1.9305 -3.6505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582103509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -56.591272 kcal Electronic energy + Delta-G solvation = -26888.723921 eV Core-core repulsion = 23070.227458 eV Total energy + Delta-G solvation = -3818.496464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.10175 -39.98898 -38.02434 -37.21965 -34.15158 -33.50070 -32.43866 -30.59647 -29.66818 -28.01826 -27.50946 -26.31522 -25.45748 -23.48797 -22.74097 -21.32303 -20.99724 -19.77546 -18.99313 -17.75522 -17.34880 -16.95809 -16.61268 -16.35032 -15.57612 -15.38575 -15.03443 -14.81198 -14.71881 -14.53748 -14.01367 -13.93075 -13.65120 -13.52875 -13.09424 -12.94278 -12.78949 -12.64610 -12.44566 -12.43959 -11.95005 -11.80945 -11.69757 -11.52987 -11.43623 -11.29130 -11.07474 -11.03953 -11.02243 -10.96162 -10.84344 -10.76574 -10.06354 -9.82520 -9.51844 -9.34889 -9.08343 -8.68530 -8.25260 -6.51860 -6.22655 -3.93596 2.28626 2.48527 2.86225 3.10723 3.21325 3.25210 3.30661 3.53868 3.99357 4.05997 4.15243 4.18965 4.19741 4.49818 4.58976 4.74259 4.79207 4.85750 4.89560 4.92538 4.97893 5.09516 5.12672 5.13379 5.16875 5.22772 5.27175 5.33708 5.40316 5.43106 5.49228 5.54153 5.61940 5.62811 5.68679 5.70860 5.75124 5.86589 5.87410 5.93265 5.95821 6.01319 6.13010 6.14968 7.10889 7.59229 7.73407 7.88857 8.34735 8.48234 9.22777 10.84862 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.001895 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.490063 B =14774.833869 C =15665.632084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.076 4.076 4 H 0.080 0.920 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.114 4.114 8 C -0.111 4.111 9 H 0.091 0.909 10 C 0.529 3.471 11 O -0.533 6.533 12 N -0.723 5.723 13 C 0.112 3.888 14 C 0.091 3.909 15 N -0.649 5.649 16 C 0.560 3.440 17 O -0.512 6.512 18 C -0.145 4.145 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.280 1.280 28 C 0.102 3.898 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.088 0.912 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 25.532 10.483 33.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.098 0.902 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.152 4.152 8 C -0.133 4.133 9 H 0.109 0.891 10 C 0.316 3.684 11 O -0.408 6.408 12 N -0.375 5.375 13 C 0.006 3.994 14 C -0.034 4.034 15 N -0.388 5.388 16 C 0.350 3.650 17 O -0.386 6.386 18 C -0.296 4.296 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 C -0.022 4.022 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.146 0.854 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.293 23.502 10.058 32.027 hybrid contribution 1.930 1.189 0.384 2.299 sum -17.363 24.690 10.442 31.939 Atomic orbital electron populations 1.21752 0.95464 1.01778 1.01703 1.21868 0.96445 0.95665 1.02966 1.21736 0.91988 0.96911 0.98872 0.90174 1.22454 0.97897 0.98615 0.96601 1.22498 0.94502 0.97953 1.01199 1.22398 0.97772 0.98910 0.96089 1.22071 0.96918 0.93074 1.01223 0.89100 1.20523 0.76085 0.88689 0.83124 1.90710 1.50797 1.64227 1.35088 1.46050 1.67422 1.15261 1.08727 1.23130 0.93493 0.83150 0.99666 1.23648 0.97539 0.88670 0.93560 1.49729 1.10537 1.23203 1.55359 1.20028 0.89036 0.78830 0.77149 1.90721 1.66287 1.43108 1.38452 1.23478 0.93157 1.07134 1.05790 1.85399 1.08456 1.21925 1.67616 1.22895 0.93366 1.12677 1.39309 0.90845 1.24999 0.99491 0.94549 0.94590 1.70030 1.36044 1.10851 1.33342 0.86102 0.82804 0.78222 0.78282 1.19601 1.20530 1.20552 1.23378 0.86451 0.96859 0.95540 0.92695 0.92626 0.92829 0.91656 0.90873 0.91501 0.91099 0.91470 0.91235 0.89488 0.91324 0.76244 0.85389 0.89577 0.89330 0.89292 0.89186 0.92214 0.89337 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.77 37.16 0.36 -0.50 16 2 C -0.13 -0.88 4.12 -26.73 -0.11 -0.99 16 3 C -0.08 -0.41 2.93 -89.50 -0.26 -0.67 16 4 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 5 C -0.12 -0.63 5.55 -25.07 -0.14 -0.77 16 6 C -0.12 -0.64 6.91 -24.68 -0.17 -0.81 16 7 C -0.11 -0.73 6.32 -25.01 -0.16 -0.89 16 8 C -0.11 -0.65 3.29 -90.65 -0.30 -0.95 16 9 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 10 C 0.53 4.41 4.68 -10.98 -0.05 4.36 16 11 O -0.53 -6.59 14.63 5.56 0.08 -6.51 16 12 N -0.72 -4.79 4.81 -55.35 -0.27 -5.06 16 13 C 0.11 1.00 4.43 -70.16 -0.31 0.69 16 14 C 0.09 0.93 8.41 -2.98 -0.03 0.91 16 15 N -0.65 -9.16 3.61 -178.57 -0.64 -9.80 16 16 C 0.56 10.96 8.07 -10.99 -0.09 10.87 16 17 O -0.51 -12.05 16.59 5.55 0.09 -11.96 16 18 C -0.15 -3.04 5.91 36.00 0.21 -2.82 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.10 1.03 8.59 -2.98 -0.03 1.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.30 7.52 -51.93 -0.39 -0.09 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.45 6.79 -51.93 -0.35 0.09 16 33 H 0.07 0.66 7.12 -51.93 -0.37 0.29 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.76 6.89 -51.93 -0.36 0.41 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.40 1.58 8.73 -40.82 -0.36 1.23 16 41 H 0.13 1.38 7.46 -51.93 -0.39 0.99 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 45 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 48 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -36.35 400.62 -10.15 -46.49 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.08 Total: -2.64 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.87 Total: -3.65 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.18 Total: -40.44 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.35 -10.15 -46.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582103509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds