Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50707 * 109.46827 * 2 1 4 4 C 1.32993 * 119.99744 * 95.00218 * 3 2 1 5 5 C 1.47101 * 119.99989 * 172.05083 * 4 3 2 6 6 O 1.21619 * 120.00023 * 353.62212 * 5 4 3 7 7 N 1.34776 * 120.00450 * 173.62520 * 5 4 3 8 8 C 1.46491 * 120.00375 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47235 * 179.97438 * 8 7 5 10 10 C 1.53495 * 114.20558 * 184.99945 * 9 8 7 11 11 N 1.47071 * 87.98555 * 220.14716 * 10 9 8 12 12 C 1.34780 * 136.05745 * 207.08503 * 11 10 9 13 13 O 1.21284 * 119.99863 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.99731 * 180.02562 * 12 11 10 15 15 S 1.80997 * 109.46945 * 180.02562 * 14 12 11 16 16 C 1.76208 * 100.00206 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99483 * 359.97438 * 16 15 14 18 18 C 1.38792 * 120.00264 * 179.72631 * 16 15 14 19 19 N 1.31627 * 120.00259 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00016 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46962 * 90.00049 * 20 18 16 22 22 H 1.48494 * 109.47118 * 210.00369 * 20 18 16 23 23 H 1.48496 * 109.47167 * 330.00503 * 20 18 16 24 24 C 1.47068 * 87.88162 * 27.34417 * 11 10 9 25 25 C 1.50701 * 119.99913 * 274.99752 * 3 2 1 26 26 C 1.52996 * 109.47083 * 272.76491 * 25 3 2 27 27 H 1.08997 * 109.46904 * 300.00202 * 1 2 3 28 28 H 1.08998 * 109.46779 * 59.99782 * 1 2 3 29 29 H 1.08995 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46845 * 240.00553 * 2 1 3 31 31 H 1.08994 * 109.47255 * 120.00149 * 2 1 3 32 32 H 1.07999 * 120.00453 * 352.05292 * 4 3 2 33 33 H 0.97002 * 119.99581 * 0.02562 * 7 5 4 34 34 H 1.08999 * 109.47382 * 59.99492 * 8 7 5 35 35 H 1.09005 * 109.47513 * 299.99941 * 8 7 5 36 36 H 1.08999 * 113.28082 * 318.06959 * 9 8 7 37 37 H 1.09003 * 113.47123 * 105.36885 * 10 9 8 38 38 H 1.09004 * 113.52435 * 334.93466 * 10 9 8 39 39 H 1.08994 * 109.47798 * 59.99881 * 14 12 11 40 40 H 1.09007 * 109.47317 * 299.99657 * 14 12 11 41 41 H 0.97002 * 120.00227 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.46822 * 87.44016 * 24 11 10 43 43 H 1.08997 * 113.46316 * 217.87398 * 24 11 10 44 44 H 1.09000 * 109.47151 * 32.76893 * 25 3 2 45 45 H 1.09000 * 109.46252 * 152.76428 * 25 3 2 46 46 H 1.09000 * 109.46956 * 299.99631 * 26 25 3 47 47 H 1.08995 * 109.47101 * 60.00312 * 26 25 3 48 48 H 1.09008 * 109.46880 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3486 2.0143 1.1474 5 6 3.0014 3.3326 1.1382 6 8 3.3567 3.8278 0.0858 7 7 3.2057 3.9916 2.2960 8 6 3.8562 5.3041 2.2868 9 6 3.9648 5.8295 3.7197 10 6 4.5225 7.2555 3.8265 11 7 5.2867 6.8129 5.0025 12 6 5.7836 7.3945 6.1122 13 8 5.6218 8.5819 6.2988 14 6 6.5399 6.5693 7.1211 15 16 7.0739 7.6285 8.4882 16 6 7.9064 6.4406 9.4886 17 1 7.9588 5.4096 9.1716 18 6 8.4991 6.8310 10.6813 19 7 9.1214 5.9437 11.4284 20 14 8.4150 8.6160 11.2258 21 1 7.1977 8.8251 12.0503 22 1 9.6196 8.9458 12.0291 23 1 8.3606 9.4960 10.0309 24 6 5.2760 5.4577 4.4314 25 6 2.1763 2.1692 -1.3002 26 6 3.5553 1.8883 -1.9003 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.1263 1.5285 2.0860 33 1 2.9226 3.5964 3.1354 34 1 3.2653 5.9984 1.6894 35 1 4.8535 5.2124 1.8566 36 1 3.0662 5.6554 4.3116 37 1 3.7631 8.0024 4.0584 38 1 5.1508 7.5413 2.9829 39 1 7.4127 6.1230 6.6446 40 1 5.8923 5.7808 7.5045 41 1 9.5360 6.2166 12.2618 42 1 6.1029 5.2685 3.7469 43 1 5.1586 4.6728 5.1786 44 1 1.4037 1.8413 -1.9956 45 1 2.0705 3.2386 -1.1174 46 1 4.3279 2.2163 -1.2049 47 1 3.6610 0.8189 -2.0830 48 1 3.6595 2.4299 -2.8405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582158229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -29.553714 kcal Electronic energy + Delta-G solvation = -25882.699377 eV Core-core repulsion = 22065.375349 eV Total energy + Delta-G solvation = -3817.324027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71862 -40.03342 -37.88391 -36.97348 -34.92351 -32.46507 -32.28478 -31.43593 -30.41720 -28.95482 -26.36613 -26.09452 -25.58454 -24.47512 -23.68373 -21.39943 -21.21154 -19.18919 -18.90385 -17.74262 -17.35067 -16.79113 -16.63787 -15.85811 -15.63180 -15.37233 -15.28447 -14.93587 -14.92059 -14.38182 -14.29986 -13.87489 -13.73047 -13.57071 -13.21382 -13.06679 -12.95118 -12.86251 -12.81423 -12.42185 -12.32093 -12.14621 -12.06212 -11.74921 -11.68937 -11.31371 -11.28540 -11.10089 -11.02727 -10.86645 -10.64292 -9.89281 -9.85061 -9.57827 -9.55426 -9.23966 -9.02716 -8.74423 -8.53414 -6.95358 -6.31207 -4.03573 0.98273 2.52648 2.82080 2.91145 2.96349 3.09934 3.31426 3.48983 3.54840 3.89802 4.23099 4.29576 4.30753 4.41243 4.45748 4.65988 4.72466 4.75664 4.77628 4.83237 4.96910 5.02822 5.07844 5.11333 5.19941 5.21114 5.23454 5.30654 5.32227 5.35254 5.37737 5.40983 5.48922 5.60248 5.67578 5.70397 5.78197 5.82739 5.89090 5.97628 5.99883 6.06312 6.20152 6.24428 7.18969 7.70943 7.91731 7.94752 8.36862 8.38975 9.14824 10.77921 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.001635 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.769575 B =17124.228281 C =17838.003209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.019 4.019 4 C -0.234 4.234 5 C 0.545 3.455 6 O -0.536 6.536 7 N -0.727 5.727 8 C 0.134 3.866 9 C -0.141 4.141 10 C 0.116 3.884 11 N -0.653 5.653 12 C 0.561 3.439 13 O -0.515 6.515 14 C -0.115 4.115 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.105 3.895 25 C -0.106 4.106 26 C -0.132 4.132 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.402 0.598 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 -12.178 -25.787 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.021 4.021 4 C -0.255 4.255 5 C 0.335 3.665 6 O -0.415 6.415 7 N -0.379 5.379 8 C 0.009 3.991 9 C -0.160 4.160 10 C -0.008 4.008 11 N -0.391 5.391 12 C 0.351 3.649 13 O -0.389 6.389 14 C -0.266 4.266 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.018 4.018 25 C -0.143 4.143 26 C -0.189 4.189 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.237 0.763 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.048 -9.955 -25.844 32.522 hybrid contribution 0.234 -1.085 0.848 1.397 sum -16.814 -11.040 -24.996 32.084 Atomic orbital electron populations 1.21725 0.94154 1.02177 1.02429 1.20788 0.96711 0.92667 1.03463 1.22586 0.89653 0.94627 0.95226 1.22350 1.07552 0.96621 0.98960 1.18565 0.79211 0.85319 0.83416 1.90741 1.51259 1.69316 1.30224 1.45906 1.62136 1.20388 1.09455 1.21218 0.98620 0.83982 0.95244 1.23326 0.99050 0.97549 0.96113 1.22808 0.94217 0.95803 0.87924 1.49556 1.57560 1.12114 1.19892 1.19900 0.77472 0.87505 0.80046 1.90718 1.57151 1.15348 1.75722 1.23207 1.02182 1.02508 0.98667 1.84805 1.71336 1.15698 1.19700 1.22299 1.40053 0.96542 1.08030 0.89376 1.24704 0.93386 0.98106 0.95050 1.69935 1.34263 1.34117 1.13287 0.86738 0.78619 0.85285 0.81234 1.19179 1.19876 1.15929 1.23156 0.96136 0.86253 0.96298 1.21019 0.97942 1.02388 0.92938 1.21525 0.96583 1.00079 1.00693 0.92335 0.92350 0.92048 0.90271 0.90581 0.85625 0.76347 0.90685 0.90713 0.86983 0.90057 0.89631 0.88554 0.88591 0.91909 0.89468 0.89985 0.92189 0.87884 0.91795 0.93735 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.90 37.16 0.37 -0.21 16 2 C -0.10 -0.44 6.11 -27.88 -0.17 -0.61 16 3 C -0.02 -0.12 4.61 -101.16 -0.47 -0.59 16 4 C -0.23 -1.52 9.60 -37.81 -0.36 -1.89 16 5 C 0.54 4.54 7.60 -12.67 -0.10 4.44 16 6 O -0.54 -5.98 11.68 5.26 0.06 -5.91 16 7 N -0.73 -4.53 5.55 -61.49 -0.34 -4.87 16 8 C 0.13 0.87 5.59 -4.05 -0.02 0.84 16 9 C -0.14 -0.95 4.11 -89.97 -0.37 -1.32 16 10 C 0.12 1.12 8.19 -8.51 -0.07 1.05 16 11 N -0.65 -8.64 3.69 -185.05 -0.68 -9.32 16 12 C 0.56 10.38 8.10 -10.99 -0.09 10.29 16 13 O -0.52 -11.55 16.64 5.55 0.09 -11.46 16 14 C -0.12 -2.28 5.98 36.00 0.22 -2.06 16 15 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 16 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.45 13.97 55.49 0.78 -25.68 16 20 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 24 C 0.11 0.92 8.00 -8.37 -0.07 0.85 16 25 C -0.11 -0.79 5.32 -27.88 -0.15 -0.94 16 26 C -0.13 -1.01 9.45 37.16 0.35 -0.66 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.30 8.03 -51.93 -0.42 -0.12 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.40 1.64 8.46 -40.82 -0.35 1.30 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 40 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.98 5.57 -51.93 -0.29 0.69 16 46 H 0.06 0.61 6.91 -51.93 -0.36 0.25 16 47 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 LS Contribution 409.88 15.07 6.18 6.18 Total: -1.00 -35.95 409.88 -9.48 -45.43 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.14 Total: -3.00 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.71 Total: -2.81 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.25 Total: -39.87 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.15 Total: -17.38 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.95 -9.48 -45.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582158229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.874 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds