Wall clock time and date at job start Sat Apr 11 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32994 * 120.00084 * 2 1 4 4 C 1.50700 * 119.99859 * 180.02562 * 3 2 1 5 5 C 1.47096 * 120.00042 * 0.02562 * 3 2 1 6 6 O 1.21616 * 119.99999 * 359.97438 * 5 3 2 7 7 N 1.34775 * 120.00142 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00389 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.47157 * 174.95470 * 8 7 5 10 10 N 1.46498 * 110.01765 * 55.13520 * 9 8 7 11 11 C 1.34772 * 120.00210 * 65.17955 * 10 9 8 12 12 O 1.21282 * 120.00034 * 354.90733 * 11 10 9 13 13 C 1.50699 * 120.00143 * 174.90221 * 11 10 9 14 14 S 1.81000 * 109.47277 * 180.02562 * 13 11 10 15 15 C 1.76195 * 100.00189 * 180.02562 * 14 13 11 16 16 H 1.08011 * 120.00019 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00042 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47027 * 89.99975 * 19 17 15 21 21 H 1.48505 * 109.47155 * 209.99809 * 19 17 15 22 22 H 1.48499 * 109.47277 * 330.00319 * 19 17 15 23 23 C 1.54266 * 110.02886 * 293.68855 * 9 8 7 24 24 C 1.54885 * 104.19730 * 217.10668 * 23 9 8 25 25 C 1.54889 * 102.74823 * 37.94774 * 24 23 9 26 26 C 1.53879 * 110.03028 * 176.52840 * 9 8 7 27 27 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46417 * 299.99773 * 1 2 3 29 29 H 1.08995 * 109.47203 * 59.99542 * 1 2 3 30 30 H 1.08007 * 119.99875 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47501 * 90.00003 * 4 3 2 32 32 H 1.09001 * 109.46917 * 329.99654 * 4 3 2 33 33 H 1.09002 * 109.47071 * 210.00203 * 4 3 2 34 34 H 0.96998 * 119.99724 * 359.97438 * 7 5 3 35 35 H 1.09004 * 109.46439 * 294.95018 * 8 7 5 36 36 H 1.08991 * 109.47087 * 54.95025 * 8 7 5 37 37 H 0.97001 * 119.99642 * 245.17639 * 10 9 8 38 38 H 1.08999 * 109.46990 * 300.00118 * 13 11 10 39 39 H 1.08999 * 109.47241 * 59.99663 * 13 11 10 40 40 H 0.96998 * 120.00248 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.49059 * 335.78860 * 23 9 8 42 42 H 1.09005 * 110.48258 * 98.43182 * 23 9 8 43 43 H 1.09001 * 110.75933 * 279.63347 * 24 23 9 44 44 H 1.08998 * 110.75613 * 156.25986 * 24 23 9 45 45 H 1.08998 * 110.48723 * 203.38408 * 25 24 23 46 46 H 1.08999 * 110.48668 * 80.73440 * 25 24 23 47 47 H 1.08999 * 110.02810 * 238.56449 * 26 9 8 48 48 H 1.09000 * 110.02920 * 359.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4366 2.4257 0.0006 6 8 0.2204 2.4257 0.0006 7 7 2.1104 3.5928 0.0000 8 6 1.3780 4.8616 0.0012 9 6 2.3677 6.0217 0.1272 10 7 3.3739 5.9399 -0.9344 11 6 3.0079 6.0892 -2.2229 12 8 1.8350 6.1988 -2.5113 13 6 4.0560 6.1201 -3.3052 14 16 3.2553 6.3312 -4.9147 15 6 4.6713 6.3323 -5.9632 16 1 5.6581 6.2223 -5.5381 17 6 4.5187 6.4744 -7.3354 18 7 3.3161 6.6080 -7.8535 19 14 6.0201 6.4762 -8.4469 20 1 6.3209 5.0863 -8.8747 21 1 5.7498 7.3146 -9.6425 22 1 7.1830 7.0291 -7.7072 23 6 3.0518 5.9848 1.5093 24 6 3.1942 7.4761 1.9026 25 6 1.8758 8.0958 1.3762 26 6 1.6199 7.3639 0.0425 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 2.0471 -0.9354 -0.0004 31 1 4.0420 1.1519 -1.0283 32 1 4.0425 0.2616 0.5130 33 1 4.0426 2.0415 0.5133 34 1 3.0804 3.5928 -0.0003 35 1 0.8199 4.9597 -0.9300 36 1 0.6863 4.8810 0.8432 37 1 4.3037 5.7784 -0.7099 38 1 4.7378 6.9516 -3.1271 39 1 4.6146 5.1841 -3.2969 40 1 3.2094 6.7070 -8.8125 41 1 2.4268 5.4581 2.2305 42 1 4.0323 5.5140 1.4372 43 1 4.0561 7.9252 1.4091 44 1 3.2671 7.5850 2.9847 45 1 1.9981 9.1656 1.2068 46 1 1.0609 7.9100 2.0758 47 1 2.0064 7.9548 -0.7879 48 1 0.5521 7.1888 -0.0888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582573730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:33 Heat of formation + Delta-G solvation = -72.675400 kcal Electronic energy + Delta-G solvation = -27972.757763 eV Core-core repulsion = 24153.563839 eV Total energy + Delta-G solvation = -3819.193924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64697 -39.54072 -37.65031 -35.18963 -34.66534 -33.30318 -32.44263 -30.67714 -29.70560 -29.00987 -28.07371 -25.52945 -25.35819 -24.62627 -22.08720 -21.23173 -20.83513 -19.72834 -18.92416 -17.85726 -16.73333 -16.43283 -16.34375 -15.75076 -15.32198 -15.08838 -14.83983 -14.81721 -14.49334 -14.22065 -13.97152 -13.73449 -13.43304 -13.29966 -13.12827 -12.92158 -12.73082 -12.64628 -12.47745 -12.21602 -12.08112 -11.67996 -11.62463 -11.45854 -11.34115 -11.21480 -11.10381 -11.07416 -11.03213 -10.77221 -10.72014 -9.83035 -9.57560 -9.43839 -9.23981 -9.08594 -8.97325 -8.79204 -8.24575 -6.50987 -6.22949 -3.93466 1.30443 2.94697 3.05730 3.18233 3.20894 3.26719 3.28893 3.32347 3.67643 4.18787 4.23057 4.37040 4.54524 4.62671 4.69314 4.94653 5.03626 5.10511 5.12265 5.20985 5.23797 5.28244 5.33188 5.37972 5.46054 5.49781 5.52218 5.57896 5.67239 5.70095 5.72020 5.77971 5.83074 5.85768 5.90501 5.97225 6.04472 6.10557 6.13740 6.22784 6.31097 6.43365 6.46925 6.69524 7.51443 7.57789 7.66869 8.25553 8.33473 8.59466 9.22363 10.84415 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.003321 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.982564 B = 8430.024542 C =10411.047181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.114 4.114 5 C 0.549 3.451 6 O -0.538 6.538 7 N -0.719 5.719 8 C 0.113 3.887 9 C 0.168 3.832 10 N -0.733 5.733 11 C 0.534 3.466 12 O -0.506 6.506 13 C -0.154 4.154 14 S -0.057 6.057 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.268 0.732 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 -6.506 23.173 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 C -0.200 4.200 4 C -0.171 4.171 5 C 0.338 3.662 6 O -0.417 6.417 7 N -0.370 5.370 8 C -0.012 4.012 9 C 0.081 3.919 10 N -0.388 5.388 11 C 0.320 3.680 12 O -0.379 6.379 13 C -0.305 4.305 14 S 0.169 5.831 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.163 4.163 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.158 4.158 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.230 0.770 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.714 -6.243 22.511 23.371 hybrid contribution 3.408 -0.204 -0.427 3.441 sum 2.694 -6.447 22.084 23.163 Atomic orbital electron populations 1.21028 0.91731 1.00828 1.04246 1.23609 0.97277 0.96585 0.91576 1.21467 0.96338 0.93280 1.08874 1.20761 0.91030 1.02533 1.02742 1.18369 0.87278 0.84044 0.76556 1.90784 1.13546 1.87561 1.49848 1.45791 1.10208 1.05605 1.75446 1.21906 0.94183 0.81223 1.03854 1.21153 0.88746 0.95013 0.87018 1.46259 1.10694 1.76275 1.05617 1.20263 0.90128 0.75100 0.82487 1.90701 1.18670 1.46633 1.81939 1.23544 1.01160 1.04757 1.01025 1.85426 1.11196 1.95241 0.91206 1.22863 0.93604 1.58135 0.93884 0.91007 1.24983 0.96843 0.94532 0.97173 1.70012 1.21341 1.46113 1.12757 0.86184 0.81593 0.78246 0.79569 1.20269 1.20738 1.19707 1.22687 1.00713 0.97856 0.95001 1.22495 0.98284 0.94677 1.00605 1.22397 0.97316 0.99867 0.96695 1.22422 1.01137 0.94174 0.98103 0.93143 0.90213 0.89943 0.85948 0.90815 0.91237 0.92029 0.76859 0.89275 0.90900 0.76974 0.89332 0.89505 0.92167 0.90010 0.91032 0.91194 0.91382 0.91383 0.91528 0.90217 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.45 36.01 0.30 -1.03 16 2 C -0.07 -0.70 9.95 -36.12 -0.36 -1.06 16 3 C -0.20 -2.12 6.00 -102.85 -0.62 -2.74 16 4 C -0.11 -0.89 9.61 36.01 0.35 -0.54 16 5 C 0.55 7.49 7.72 -12.67 -0.10 7.39 16 6 O -0.54 -9.01 13.07 5.26 0.07 -8.94 16 7 N -0.72 -8.51 5.17 -61.49 -0.32 -8.83 16 8 C 0.11 1.46 4.06 -4.04 -0.02 1.44 16 9 C 0.17 1.80 0.57 -130.70 -0.07 1.73 16 10 N -0.73 -8.62 4.50 -46.57 -0.21 -8.83 16 11 C 0.53 9.22 6.89 -10.99 -0.08 9.14 16 12 O -0.51 -10.72 13.13 5.56 0.07 -10.65 16 13 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 14 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 15 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 16 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 19 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.12 -0.94 5.74 -25.07 -0.14 -1.08 16 24 C -0.12 -0.90 6.91 -24.74 -0.17 -1.08 16 25 C -0.13 -1.10 6.83 -25.07 -0.17 -1.27 16 26 C -0.12 -1.41 5.22 -25.61 -0.13 -1.54 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.95 7.22 -51.93 -0.37 0.58 16 29 H 0.08 1.09 7.22 -51.93 -0.37 0.72 16 30 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.06 0.40 6.70 -51.93 -0.35 0.05 16 34 H 0.40 3.80 6.09 -40.82 -0.25 3.55 16 35 H 0.09 1.54 6.56 -51.93 -0.34 1.20 16 36 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.40 3.48 8.23 -40.82 -0.34 3.14 16 38 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 39 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 0.60 7.78 -51.93 -0.40 0.20 16 42 H 0.07 0.43 7.70 -51.93 -0.40 0.03 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 1.14 6.99 -51.93 -0.36 0.78 16 48 H 0.08 0.96 7.67 -51.93 -0.40 0.57 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -35.21 397.22 -9.47 -44.68 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.77 Total: 5.66 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.79 Total: -6.22 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.21 Total: -43.02 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.14 Total: -19.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.21 -9.47 -44.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582573730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.999 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds