Wall clock time and date at job start Sat Apr 11 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32991 * 120.00054 * 2 1 4 4 C 1.50705 * 119.99959 * 180.02562 * 3 2 1 5 5 C 1.47097 * 120.00025 * 0.02562 * 3 2 1 6 6 O 1.21615 * 120.00309 * 359.97438 * 5 3 2 7 7 N 1.34784 * 120.00357 * 179.97438 * 5 3 2 8 8 C 1.46500 * 120.00279 * 179.97438 * 7 5 3 9 9 C 1.52999 * 109.47030 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47076 * 300.00020 * 9 8 7 11 11 N 1.46494 * 109.46969 * 59.99927 * 9 8 7 12 12 C 1.34772 * 120.00318 * 63.95184 * 11 9 8 13 13 O 1.21290 * 119.99870 * 5.18818 * 12 11 9 14 14 C 1.50698 * 120.00296 * 185.19000 * 12 11 9 15 15 S 1.81001 * 109.47162 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00092 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99801 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00152 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00084 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46552 * 60.00711 * 20 18 16 22 22 H 1.48503 * 109.46736 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47409 * 300.00209 * 20 18 16 24 24 C 1.52998 * 109.46747 * 180.02562 * 9 8 7 25 25 C 1.53001 * 117.51697 * 108.45111 * 24 9 8 26 26 C 1.52998 * 60.00223 * 107.47870 * 25 24 9 27 27 H 1.09003 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46900 * 299.99706 * 1 2 3 29 29 H 1.08997 * 109.47468 * 59.99145 * 1 2 3 30 30 H 1.08001 * 120.00254 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46820 * 269.99788 * 4 3 2 32 32 H 1.08993 * 109.47134 * 30.00305 * 4 3 2 33 33 H 1.09003 * 109.46531 * 150.00372 * 4 3 2 34 34 H 0.96996 * 119.99286 * 0.02562 * 7 5 3 35 35 H 1.09004 * 109.46802 * 60.00088 * 8 7 5 36 36 H 1.08993 * 109.47119 * 300.00281 * 8 7 5 37 37 H 1.09003 * 109.46706 * 300.00391 * 10 9 8 38 38 H 1.09000 * 109.47099 * 59.99667 * 10 9 8 39 39 H 1.08993 * 109.46980 * 180.02562 * 10 9 8 40 40 H 0.97001 * 119.99703 * 243.94166 * 11 9 8 41 41 H 1.09002 * 109.46756 * 299.99546 * 14 12 11 42 42 H 1.08998 * 109.47335 * 59.99839 * 14 12 11 43 43 H 0.97001 * 120.00200 * 179.97438 * 19 18 16 44 44 H 1.08999 * 115.55380 * 322.74422 * 24 9 8 45 45 H 1.09002 * 117.50163 * 214.96480 * 25 24 9 46 46 H 1.08997 * 117.50077 * 359.97438 * 25 24 9 47 47 H 1.09004 * 117.49738 * 252.51484 * 26 25 24 48 48 H 1.08997 * 117.52181 * 107.48075 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4256 0.0006 6 8 0.2203 2.4257 0.0006 7 7 2.1104 3.5929 0.0011 8 6 1.3779 4.8617 0.0011 9 6 2.3721 6.0246 0.0011 10 6 3.2518 5.9435 1.2504 11 7 3.2143 5.9469 -1.1950 12 6 2.6625 6.0785 -2.4175 13 8 1.4864 6.3546 -2.5254 14 6 3.5066 5.8826 -3.6504 15 16 2.4856 6.1239 -5.1253 16 6 3.6902 5.8444 -6.3805 17 1 4.7077 5.6055 -6.1087 18 6 3.3311 5.9302 -7.7185 19 7 2.0907 6.2208 -8.0497 20 14 4.6084 5.6345 -9.0491 21 1 5.1569 4.2613 -8.9123 22 1 3.9759 5.7846 -10.3844 23 1 5.7075 6.6230 -8.9087 24 6 1.6071 7.3495 0.0017 25 6 1.6259 8.1761 1.2891 26 6 2.4276 8.6390 0.0711 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.0470 -0.9353 -0.0004 31 1 4.0427 1.1515 1.0269 32 1 4.0421 0.2619 -0.5148 33 1 4.0421 2.0419 -0.5143 34 1 3.0803 3.5929 0.0007 35 1 0.7509 4.9192 0.8909 36 1 0.7515 4.9196 -0.8890 37 1 2.6250 6.0012 2.1403 38 1 3.7967 4.9995 1.2504 39 1 3.9597 6.7722 1.2506 40 1 4.1692 5.8009 -1.1071 41 1 4.3225 6.6054 -3.6507 42 1 3.9160 4.8724 -3.6537 43 1 1.8398 6.2811 -8.9848 44 1 0.6939 7.3655 -0.5933 45 1 0.7252 8.7358 1.5412 46 1 2.1831 7.7758 2.1361 47 1 3.5125 8.5433 0.1166 48 1 2.0546 9.5032 -0.4787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582622079.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:50 Heat of formation + Delta-G solvation = -59.498371 kcal Electronic energy + Delta-G solvation = -28000.619223 eV Core-core repulsion = 24181.996697 eV Total energy + Delta-G solvation = -3818.622525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69928 -40.63769 -38.84423 -36.45113 -35.87837 -34.75917 -34.58261 -32.27713 -30.85065 -29.89802 -28.04129 -27.65343 -25.89129 -24.62085 -23.31982 -22.60126 -22.12018 -20.74830 -19.86955 -19.83075 -17.85732 -17.57865 -17.37886 -16.99708 -16.88359 -16.49025 -16.30159 -16.12497 -15.64778 -15.27714 -15.07216 -14.77795 -14.57206 -14.45005 -14.22336 -13.83304 -13.68500 -13.55197 -13.49728 -13.32625 -13.23687 -13.17059 -12.86927 -12.84790 -12.62142 -12.56282 -12.36260 -12.17187 -12.01493 -11.74793 -11.42134 -11.14768 -11.13141 -10.64216 -10.59720 -10.26607 -10.24195 -10.11061 -9.79736 -8.66137 -8.34789 -6.12653 0.43933 1.26687 1.42927 1.46509 1.55825 1.69118 2.10078 2.26458 2.28114 2.32350 2.99300 3.00425 3.32969 3.51243 3.71809 3.82482 3.84778 3.95833 4.04726 4.13734 4.23261 4.32064 4.36849 4.42519 4.48356 4.50607 4.58074 4.70387 4.77730 4.79795 4.82189 4.89036 4.90245 4.96447 5.01342 5.03513 5.20775 5.24982 5.27812 5.35735 5.39065 5.40514 5.51121 5.56654 5.65433 6.18774 6.55154 6.59865 7.06296 7.25555 7.34671 8.74136 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008581 B = 0.003530 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.323292 B = 7929.681372 C =10146.119672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.067 4.067 3 C -0.209 4.209 4 C -0.109 4.109 5 C 0.534 3.466 6 O -0.581 6.581 7 N -0.707 5.707 8 C 0.121 3.879 9 C 0.209 3.791 10 C -0.154 4.154 11 N -0.705 5.705 12 C 0.539 3.461 13 O -0.551 6.551 14 C -0.129 4.129 15 S -0.154 6.154 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.913 5.913 20 Si 0.997 3.003 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.260 1.260 24 C -0.175 4.175 25 C -0.156 4.156 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.417 0.583 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.270 0.730 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.110 0.890 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.826 -6.912 25.081 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.086 4.086 3 C -0.212 4.212 4 C -0.166 4.166 5 C 0.325 3.675 6 O -0.463 6.463 7 N -0.360 5.360 8 C -0.005 4.005 9 C 0.123 3.877 10 C -0.211 4.211 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.428 6.428 14 C -0.280 4.280 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.549 5.549 20 Si 0.819 3.181 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.185 1.185 24 C -0.195 4.195 25 C -0.193 4.193 26 C -0.205 4.205 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.177 0.823 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.255 0.745 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.147 0.853 47 H 0.128 0.872 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.918 -6.410 24.787 26.521 hybrid contribution 1.821 -0.162 -1.421 2.316 sum 8.739 -6.573 23.366 25.798 Atomic orbital electron populations 1.20957 0.93274 1.01599 1.02005 1.23924 0.96443 0.97979 0.90290 1.21669 0.98204 0.91700 1.09597 1.20812 0.88157 1.03860 1.03770 1.19097 0.87112 0.85524 0.75812 1.90780 1.15658 1.88243 1.51636 1.45717 1.10766 1.04696 1.74796 1.21514 0.94826 0.82785 1.01348 1.19934 0.90366 0.91383 0.86064 1.22241 0.99908 1.04408 0.94566 1.45878 1.12052 1.74569 1.03567 1.19946 0.87405 0.75470 0.84759 1.90693 1.18273 1.46956 1.86847 1.23374 1.02627 1.06142 0.95866 1.85645 1.17689 1.92654 0.96660 1.23178 0.97585 1.55504 0.93154 0.89886 1.26132 0.98271 0.93983 1.00748 1.70190 1.19352 1.46490 1.18917 0.85021 0.77608 0.79459 0.76023 1.18582 1.20532 1.18488 1.22355 1.01767 0.91987 1.03379 1.23289 1.02619 1.01715 0.91637 1.22860 0.99166 0.96336 1.02131 0.90700 0.91813 0.93150 0.82291 0.89083 0.89796 0.91560 0.75057 0.90669 0.94669 0.88944 0.89939 0.89294 0.74528 0.87344 0.87701 0.92074 0.90663 0.88835 0.85324 0.87171 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 8.45 71.24 0.60 -2.16 16 2 C -0.07 -1.23 9.95 24.52 0.24 -0.98 16 3 C -0.21 -4.15 6.00 -18.70 -0.11 -4.26 16 4 C -0.11 -1.25 9.61 71.24 0.68 -0.57 16 5 C 0.53 14.67 7.72 86.57 0.67 15.34 16 6 O -0.58 -20.97 13.07 -4.08 -0.05 -21.02 16 7 N -0.71 -15.83 5.07 -466.71 -2.37 -18.20 16 8 C 0.12 3.20 4.44 86.38 0.38 3.58 16 9 C 0.21 4.18 0.54 3.61 0.00 4.18 16 10 C -0.15 -1.50 7.04 71.98 0.51 -0.99 16 11 N -0.71 -15.55 4.71 -422.93 -1.99 -17.54 16 12 C 0.54 19.01 7.26 87.66 0.64 19.64 16 13 O -0.55 -24.98 12.69 -3.06 -0.04 -25.02 16 14 C -0.13 -4.99 6.16 71.24 0.44 -4.56 16 15 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 16 C -0.55 -31.29 9.50 67.95 0.65 -30.65 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -56.87 13.22 21.65 0.29 -56.59 16 20 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 C -0.18 -4.22 4.05 -10.79 -0.04 -4.26 16 25 C -0.16 -2.54 9.61 30.59 0.29 -2.25 16 26 C -0.17 -3.42 9.81 30.59 0.30 -3.12 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.63 7.22 -2.38 -0.02 1.61 16 29 H 0.05 1.47 7.22 -2.39 -0.02 1.46 16 30 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.07 0.72 6.70 -2.39 -0.02 0.70 16 34 H 0.41 6.34 5.25 -92.71 -0.49 5.85 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.34 6.64 -2.39 -0.02 1.32 16 37 H 0.09 0.77 6.83 -2.39 -0.02 0.75 16 38 H 0.08 0.51 6.86 -2.39 -0.02 0.49 16 39 H 0.09 0.61 7.01 -2.39 -0.02 0.59 16 40 H 0.42 5.83 8.48 -92.71 -0.79 5.04 16 41 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.07 2.54 7.18 -2.39 -0.02 2.52 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.13 1.33 5.87 -2.39 -0.01 1.32 16 47 H 0.11 1.81 7.42 -2.38 -0.02 1.79 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -86.08 397.76 2.13 -83.96 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.29 Total: 28.29 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.72 Total: -9.82 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.07 Total: -92.33 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.09 Total: -46.04 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -86.08 2.13 -83.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582622079.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.461 kcal (2) G-P(sol) polarization free energy of solvation -86.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds