Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 C 1.53003 * 109.47074 * 119.99414 * 2 1 3 5 5 C 1.50701 * 109.46673 * 65.00467 * 4 2 1 6 6 O 1.21275 * 120.00537 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99746 * 179.97438 * 5 4 2 8 8 C 1.46607 * 125.29903 * 180.02562 * 7 5 4 9 9 C 1.54203 * 107.10893 * 162.52533 * 8 7 5 10 10 H 1.09003 * 113.15080 * 260.90503 * 9 8 7 11 11 C 1.54552 * 107.94073 * 134.90293 * 9 8 7 12 12 C 1.54035 * 103.78084 * 277.17263 * 11 9 8 13 13 N 1.46844 * 106.56410 * 331.62503 * 12 11 9 14 14 C 1.34778 * 125.32170 * 198.46762 * 13 12 11 15 15 O 1.21282 * 120.00178 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99993 * 0.02562 * 14 13 12 17 17 S 1.80996 * 109.47137 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00517 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00058 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47033 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47212 * 210.00340 * 22 20 18 25 25 H 1.48505 * 109.46994 * 329.99896 * 22 20 18 26 26 C 1.46255 * 109.29032 * 18.48694 * 13 12 11 27 27 H 1.09007 * 111.18911 * 237.74339 * 26 13 12 28 28 C 1.46615 * 125.30007 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47610 * 60.00093 * 1 2 3 30 30 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47527 * 299.99808 * 1 2 3 32 32 H 1.08996 * 109.47394 * 239.99788 * 2 1 3 33 33 H 1.09007 * 109.47092 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47164 * 299.99899 * 3 2 1 35 35 H 1.08996 * 109.47371 * 59.99774 * 3 2 1 36 36 H 1.08996 * 109.47525 * 305.00620 * 4 2 1 37 37 H 1.08993 * 109.46879 * 185.00198 * 4 2 1 38 38 H 1.08991 * 109.91425 * 43.15712 * 8 7 5 39 39 H 1.09001 * 109.90870 * 281.88778 * 8 7 5 40 40 H 1.09004 * 110.56385 * 158.59878 * 11 9 8 41 41 H 1.09005 * 110.56720 * 35.74800 * 11 9 8 42 42 H 1.09002 * 110.04642 * 90.91552 * 12 11 9 43 43 H 1.09005 * 110.04993 * 212.33631 * 12 11 9 44 44 H 1.08999 * 109.47512 * 300.00227 * 16 14 13 45 45 H 1.09010 * 109.46937 * 60.00544 * 16 14 13 46 46 H 0.97005 * 119.99496 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.74381 * 302.18951 * 28 7 5 48 48 H 1.08994 * 109.74712 * 62.87108 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 -2.1732 1.1890 6 8 1.0110 -2.5902 0.2405 7 7 1.9854 -3.0086 2.1892 8 6 1.6603 -4.4369 2.2497 9 6 2.5982 -5.0717 3.2962 10 1 3.4595 -5.5713 2.8527 11 6 1.7506 -6.0028 4.1924 12 6 1.1313 -5.0486 5.2310 13 7 2.0674 -3.9269 5.3794 14 6 2.0932 -3.0655 6.4156 15 8 2.9108 -2.1700 6.4395 16 6 1.1062 -3.2149 7.5445 17 16 1.3936 -1.9172 8.7730 18 6 0.1399 -2.3206 9.9435 19 1 -0.5123 -3.1633 9.7673 20 6 -0.0097 -1.5556 11.0919 21 7 -0.9460 -1.8574 11.9665 22 14 1.1178 -0.0977 11.3963 23 1 0.5179 1.1243 10.8031 24 1 1.2927 0.0961 12.8581 25 1 2.4393 -0.3547 10.7695 26 6 2.9661 -3.8918 4.2261 27 1 4.0086 -3.9621 4.5367 28 6 2.7429 -2.6304 3.3861 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1262 -0.6442 1.2952 38 1 1.8258 -4.8968 1.2755 39 1 0.6218 -4.5686 2.5536 40 1 2.3835 -6.7431 4.6821 41 1 0.9707 -6.4910 3.6080 42 1 0.1666 -4.6857 4.8764 43 1 1.0096 -5.5623 6.1846 44 1 0.0921 -3.1274 7.1546 45 1 1.2331 -4.1919 8.0111 46 1 -1.0502 -1.3228 12.7692 47 1 3.7042 -2.2068 3.0950 48 1 2.1779 -1.8989 3.9637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702140607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -98.953990 kcal Electronic energy + Delta-G solvation = -27864.839014 eV Core-core repulsion = 24044.505565 eV Total energy + Delta-G solvation = -3820.333449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.14320 -40.67085 -39.22443 -36.71478 -36.21544 -34.68366 -33.45033 -31.80229 -30.58651 -29.33199 -28.06983 -28.00219 -27.83889 -25.05685 -24.04111 -21.68593 -21.36785 -20.65201 -20.11247 -19.55236 -18.49756 -17.98449 -17.35767 -17.15231 -16.95314 -16.77845 -16.33832 -15.90454 -15.57837 -15.51880 -14.93301 -14.92341 -14.85411 -14.46962 -14.30757 -14.19061 -13.90580 -13.56998 -13.34207 -13.26152 -13.15269 -13.08387 -13.02456 -12.89692 -12.78029 -12.65704 -12.25722 -12.16023 -11.99614 -11.86545 -11.80336 -11.68726 -11.62557 -11.17910 -11.02428 -10.84046 -10.55444 -9.79862 -9.72929 -9.01211 -8.52413 -6.23532 0.95031 1.31325 1.44209 1.47199 1.52444 1.53852 1.90181 2.04626 2.24262 2.66127 2.86048 3.05954 3.30660 3.58049 3.65079 3.74212 3.80510 3.94262 3.99917 4.11259 4.14445 4.17969 4.24800 4.32609 4.38678 4.43392 4.57465 4.60435 4.67953 4.69036 4.71250 4.77440 4.79736 4.81307 4.98754 5.00471 5.05584 5.08220 5.18025 5.21394 5.27902 5.36692 5.42616 5.45040 5.69698 6.10484 6.29236 6.37602 6.92618 7.02084 7.07899 8.60084 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002911 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.748160 B = 9616.106541 C =11147.843472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.133 4.133 5 C 0.525 3.475 6 O -0.571 6.571 7 N -0.616 5.616 8 C 0.105 3.895 9 C -0.087 4.087 10 H 0.143 0.857 11 C -0.111 4.111 12 C 0.086 3.914 13 N -0.604 5.604 14 C 0.551 3.449 15 O -0.551 6.551 16 C -0.105 4.105 17 S -0.169 6.169 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.045 3.955 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.234 1.234 26 C 0.128 3.872 27 H 0.105 0.895 28 C 0.097 3.903 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.277 0.723 47 H 0.094 0.906 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -5.915 -24.156 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.172 4.172 5 C 0.315 3.685 6 O -0.451 6.451 7 N -0.349 5.349 8 C -0.017 4.017 9 C -0.106 4.106 10 H 0.161 0.839 11 C -0.149 4.149 12 C -0.036 4.036 13 N -0.339 5.339 14 C 0.339 3.661 15 O -0.429 6.429 16 C -0.255 4.255 17 S 0.058 5.942 18 C -0.677 4.677 19 H 0.079 0.921 20 C -0.160 4.160 21 N -0.556 5.556 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.158 1.158 26 C 0.024 3.976 27 H 0.123 0.877 28 C -0.027 4.027 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.130 0.870 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.747 -4.689 -24.440 26.726 hybrid contribution -1.309 -0.359 0.860 1.606 sum 8.439 -5.049 -23.580 25.548 Atomic orbital electron populations 1.21929 0.95605 1.01813 1.01587 1.20847 0.95923 0.96447 0.96470 1.21834 1.01543 0.94372 1.02420 1.21830 1.04051 0.90201 1.01148 1.20822 0.78373 0.88838 0.80441 1.90647 1.41615 1.78583 1.34212 1.48352 1.55492 1.10456 1.20628 1.22199 0.98970 0.80164 1.00349 1.23030 0.99709 0.94234 0.93666 0.83947 1.22578 1.00216 0.96609 0.95537 1.22389 0.92773 0.86783 1.01700 1.48083 1.35543 1.30523 1.19745 1.19561 0.83883 0.80762 0.81888 1.90694 1.39669 1.33848 1.78668 1.23218 1.01968 1.03588 0.96757 1.84641 1.46766 1.41653 1.21182 1.22450 1.18851 1.18434 1.07944 0.92095 1.25576 0.96246 0.99775 0.94416 1.70018 1.33177 1.41024 1.11344 0.85866 0.81447 0.79840 0.79225 1.18743 1.18374 1.15790 1.21928 0.95593 0.94845 0.85267 0.87723 1.22133 0.97077 0.97940 0.85508 0.92085 0.93200 0.93200 0.91358 0.91579 0.91755 0.92485 0.88858 0.87025 0.90091 0.91813 0.88124 0.87170 0.91402 0.89480 0.87792 0.87045 0.91352 0.88758 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.93 71.98 0.64 -2.44 16 2 C -0.08 -1.39 2.57 -10.79 -0.03 -1.42 16 3 C -0.14 -1.99 9.19 71.98 0.66 -1.32 16 4 C -0.13 -2.39 4.34 29.85 0.13 -2.26 16 5 C 0.52 11.91 7.55 87.66 0.66 12.57 16 6 O -0.57 -16.37 14.25 -3.01 -0.04 -16.41 16 7 N -0.62 -12.03 3.31 -818.57 -2.71 -14.74 16 8 C 0.11 1.61 6.14 86.77 0.53 2.15 16 9 C -0.09 -0.90 4.24 -9.29 -0.04 -0.94 16 10 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 11 C -0.11 -0.95 6.22 31.47 0.20 -0.75 16 12 C 0.09 1.35 6.25 86.66 0.54 1.89 16 13 N -0.60 -13.65 3.02 -792.02 -2.39 -16.04 16 14 C 0.55 18.04 7.41 87.66 0.65 18.69 16 15 O -0.55 -21.76 15.63 -3.04 -0.05 -21.81 16 16 C -0.10 -3.85 5.19 71.24 0.37 -3.48 16 17 S -0.17 -8.33 18.55 -56.49 -1.05 -9.38 16 18 C -0.53 -30.39 10.04 67.96 0.68 -29.71 16 19 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 20 C 0.05 2.63 5.50 84.86 0.47 3.09 16 21 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 22 Si 0.91 44.29 27.74 68.60 1.90 46.20 16 23 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.23 -11.22 6.74 99.48 0.67 -10.55 16 26 C 0.13 2.22 3.49 45.67 0.16 2.38 16 27 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 28 C 0.10 1.87 5.95 86.42 0.51 2.39 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.25 5.95 -2.39 -0.01 1.24 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.33 7.95 -2.39 -0.02 1.31 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 39 H 0.06 1.06 7.30 -2.39 -0.02 1.04 16 40 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.11 0.59 7.82 -2.38 -0.02 0.57 16 42 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 43 H 0.09 1.34 7.61 -2.38 -0.02 1.32 16 44 H 0.10 3.65 8.14 -2.40 -0.02 3.63 16 45 H 0.11 3.78 7.87 -2.39 -0.02 3.76 16 46 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 47 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 48 H 0.05 1.36 7.30 -2.39 -0.02 1.34 16 Total: -1.00 -75.88 392.45 3.00 -72.88 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.89 Total: 13.66 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.14 Total: 0.83 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -4.80 Total: -85.97 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.09 Total: -38.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.38 kcal Total: -75.88 3.00 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702140607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.074 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds