Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 H 1.08998 * 115.54943 * 29.33090 * 3 2 1 5 5 C 1.52994 * 117.50255 * 243.62017 * 3 2 1 6 6 C 1.52991 * 60.00271 * 252.50947 * 5 3 2 7 7 H 1.09005 * 117.51905 * 107.47781 * 6 5 3 8 8 C 1.50699 * 117.50467 * 252.50785 * 6 5 3 9 9 O 1.21285 * 119.99872 * 68.61421 * 8 6 5 10 10 N 1.34769 * 120.00328 * 248.62831 * 8 6 5 11 11 C 1.47430 * 125.64601 * 354.94719 * 10 8 6 12 12 C 1.54909 * 104.83182 * 204.09694 * 11 10 8 13 13 C 1.55152 * 101.58499 * 322.99348 * 12 11 10 14 14 C 1.47024 * 125.65350 * 174.91210 * 10 8 6 15 15 H 1.09003 * 109.88047 * 59.40169 * 14 10 8 16 16 C 1.52997 * 109.88323 * 298.39432 * 14 10 8 17 17 N 1.46495 * 109.47522 * 175.34763 * 16 14 10 18 18 C 1.34775 * 120.00451 * 184.90413 * 17 16 14 19 19 O 1.21277 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99998 * 179.97438 * 18 17 16 21 21 S 1.81005 * 109.47017 * 179.97438 * 20 18 17 22 22 C 1.76194 * 100.00113 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99961 * 359.97438 * 22 21 20 24 24 C 1.38801 * 120.00328 * 180.02562 * 22 21 20 25 25 N 1.31635 * 119.99530 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00307 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47638 * 59.99539 * 26 24 22 28 28 H 1.48498 * 109.47263 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46992 * 299.99655 * 26 24 22 30 30 H 1.08999 * 109.46706 * 60.00171 * 1 2 3 31 31 H 1.09003 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47119 * 299.99510 * 1 2 3 33 33 H 1.08996 * 109.47119 * 240.00490 * 2 1 3 34 34 H 1.08995 * 109.47162 * 119.99969 * 2 1 3 35 35 H 1.09000 * 117.50302 * 145.01640 * 5 3 2 36 36 H 1.09001 * 117.50115 * 0.02562 * 5 3 2 37 37 H 1.09002 * 110.36516 * 85.26041 * 11 10 8 38 38 H 1.09001 * 110.46204 * 322.98716 * 11 10 8 39 39 H 1.09003 * 111.00476 * 81.07124 * 12 11 10 40 40 H 1.09005 * 111.00265 * 204.91732 * 12 11 10 41 41 H 1.08996 * 110.72605 * 153.86545 * 13 12 11 42 42 H 1.09004 * 110.72391 * 277.14003 * 13 12 11 43 43 H 1.09002 * 109.46478 * 295.34601 * 16 14 10 44 44 H 1.08993 * 109.47207 * 55.33707 * 16 14 10 45 45 H 0.97007 * 119.99787 * 4.89449 * 17 16 14 46 46 H 1.08999 * 109.47372 * 299.99608 * 20 18 17 47 47 H 1.09000 * 109.47497 * 60.00069 * 20 18 17 48 48 H 0.96999 * 119.99789 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9076 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1965 8 6 4.0228 2.8620 0.8916 9 8 3.2157 3.6168 1.3916 10 7 5.3422 3.1004 1.0273 11 6 6.4272 2.2158 0.5646 12 6 7.6408 2.5766 1.4571 13 6 7.4707 4.1113 1.6087 14 6 5.9383 4.2859 1.6605 15 1 5.6061 4.3594 2.6961 16 6 5.5316 5.5455 0.8932 17 7 6.0372 6.7286 1.5937 18 6 5.7155 7.9612 1.1536 19 8 5.0078 8.0909 0.1773 20 6 6.2351 9.1782 1.8746 21 16 5.6337 10.6719 1.0479 22 6 6.3698 11.9044 2.0694 23 1 6.9796 11.6138 2.9121 24 6 6.1652 13.2489 1.7917 25 7 5.4216 13.6031 0.7649 26 14 6.9463 14.5556 2.8742 27 1 8.4232 14.4041 2.8457 28 1 6.5775 15.9023 2.3688 29 1 6.4594 14.3992 4.2684 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7212 2.9428 -1.5343 36 1 3.0093 1.1861 -2.0159 37 1 6.6553 2.4114 -0.4832 38 1 6.1517 1.1703 0.7034 39 1 7.5760 2.0789 2.4247 40 1 8.5789 2.3350 0.9573 41 1 7.9302 4.4609 2.5332 42 1 7.8892 4.6327 0.7477 43 1 5.9528 5.5106 -0.1116 44 1 4.4448 5.5974 0.8300 45 1 6.6034 6.6249 2.3746 46 1 5.8836 9.1670 2.9063 47 1 7.3250 9.1703 1.8620 48 1 5.2789 14.5426 0.5706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704322552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = -58.837534 kcal Electronic energy + Delta-G solvation = -26668.677109 eV Core-core repulsion = 22850.083240 eV Total energy + Delta-G solvation = -3818.593869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79186 -39.20010 -38.38067 -36.91124 -34.53845 -32.54194 -32.40108 -31.84630 -30.77424 -28.75007 -25.80390 -25.47609 -24.81406 -24.08034 -22.66360 -21.37609 -20.64353 -20.38955 -19.09323 -17.86307 -17.60486 -16.98856 -16.28523 -15.85558 -15.44831 -15.15643 -15.03519 -14.88420 -14.77947 -14.44066 -14.05632 -13.95877 -13.62776 -13.55038 -13.13732 -13.04643 -12.87899 -12.66619 -12.50821 -12.46969 -12.29268 -11.81037 -11.79622 -11.62188 -11.39897 -11.20441 -11.15382 -11.01889 -11.01592 -10.74895 -10.64908 -10.40126 -10.03583 -9.80143 -9.38780 -9.03766 -8.99686 -8.83681 -8.20363 -6.46811 -6.18718 -3.89187 2.21322 2.44325 3.12169 3.15671 3.25341 3.29696 3.35430 3.46333 3.78499 3.94356 4.09440 4.23092 4.26993 4.39015 4.40403 4.45294 4.63161 4.74277 4.80993 4.89195 4.94996 4.98903 5.04162 5.15524 5.16150 5.20072 5.30469 5.34770 5.37730 5.41374 5.46286 5.53869 5.61188 5.65000 5.70415 5.71650 5.75717 5.79675 5.88464 5.93707 6.02214 6.12176 6.16886 6.63123 7.17302 7.61744 7.73422 7.91021 8.37671 8.66442 9.26176 10.88668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.001982 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.669810 B =14126.031125 C =15277.859242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.118 4.118 4 H 0.119 0.881 5 C -0.146 4.146 6 C -0.189 4.189 7 H 0.122 0.878 8 C 0.557 3.443 9 O -0.527 6.527 10 N -0.611 5.611 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.132 4.132 14 C 0.128 3.872 15 H 0.083 0.917 16 C 0.114 3.886 17 N -0.735 5.735 18 C 0.532 3.468 19 O -0.516 6.516 20 C -0.152 4.152 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.397 0.603 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -32.486 0.127 32.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.137 4.137 4 H 0.137 0.863 5 C -0.183 4.183 6 C -0.210 4.210 7 H 0.139 0.861 8 C 0.346 3.654 9 O -0.403 6.403 10 N -0.346 5.346 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.170 4.170 14 C 0.024 3.976 15 H 0.101 0.899 16 C -0.012 4.012 17 N -0.390 5.390 18 C 0.318 3.682 19 O -0.390 6.390 20 C -0.303 4.303 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.230 0.770 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.375 -31.729 -1.369 31.761 hybrid contribution 1.784 0.612 2.203 2.900 sum 2.159 -31.117 0.834 31.203 Atomic orbital electron populations 1.21746 0.95041 1.01656 1.02361 1.21148 0.96435 0.93496 1.02019 1.22524 0.91182 0.98852 1.01141 0.86278 1.23129 1.01564 1.03514 0.90137 1.22251 0.97764 0.98518 1.02438 0.86059 1.19401 0.80376 0.85839 0.79740 1.90759 1.52875 1.48812 1.47862 1.48358 1.05063 1.21538 1.59671 1.22359 0.86712 0.94422 0.98723 1.22786 0.97907 0.95895 1.00476 1.22797 0.93579 0.96587 1.03993 1.21736 0.93241 0.85118 0.97500 0.89863 1.21550 1.01014 0.83193 0.95418 1.45834 1.54531 1.05236 1.33424 1.20297 0.79932 0.83581 0.84367 1.90707 1.36058 1.85971 1.26219 1.23522 1.04264 0.98726 1.03779 1.85423 1.66856 0.91679 1.39355 1.22831 1.36615 0.92693 1.16282 0.90977 1.24996 0.95116 0.97866 0.95634 1.70014 1.36119 1.17647 1.26508 0.86219 0.79443 0.79669 0.80131 1.19964 1.20820 1.19949 0.92395 0.92611 0.92401 0.91668 0.91501 0.88017 0.87697 0.90952 0.90408 0.90421 0.89461 0.89505 0.89704 0.91802 0.90277 0.76966 0.89195 0.89206 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.87 37.16 0.37 -0.53 16 2 C -0.09 -0.56 6.22 -26.73 -0.17 -0.73 16 3 C -0.12 -0.98 5.25 -90.62 -0.48 -1.45 16 4 H 0.12 1.25 7.60 -51.93 -0.39 0.86 16 5 C -0.15 -1.12 9.88 -26.74 -0.26 -1.38 16 6 C -0.19 -1.55 5.29 -91.78 -0.49 -2.03 16 7 H 0.12 0.70 7.08 -51.93 -0.37 0.33 16 8 C 0.56 6.49 7.36 -10.99 -0.08 6.41 16 9 O -0.53 -8.47 15.43 5.55 0.09 -8.39 16 10 N -0.61 -5.78 3.07 -163.01 -0.50 -6.28 16 11 C 0.10 0.57 6.64 -2.53 -0.02 0.56 16 12 C -0.13 -0.62 7.08 -24.59 -0.17 -0.79 16 13 C -0.13 -0.86 6.08 -24.90 -0.15 -1.01 16 14 C 0.13 1.26 2.93 -66.95 -0.20 1.07 16 15 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.11 1.55 5.07 -4.05 -0.02 1.53 16 17 N -0.73 -10.53 5.41 -60.30 -0.33 -10.85 16 18 C 0.53 10.51 7.85 -10.99 -0.09 10.43 16 19 O -0.52 -12.50 15.86 5.56 0.09 -12.41 16 20 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 21 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 22 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 25 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 26 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.57 8.03 -51.93 -0.42 0.16 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.31 7.11 -51.93 -0.37 -0.06 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 43 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 44 H 0.08 1.38 6.89 -51.93 -0.36 1.02 16 45 H 0.40 4.29 8.25 -40.82 -0.34 3.95 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 47 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -37.69 407.53 -10.43 -48.12 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.09 Total: 0.80 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.33 Total: -4.07 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.09 Total: -42.95 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.69 -10.43 -48.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704322552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.717 kcal (2) G-P(sol) polarization free energy of solvation -37.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds