Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46911 * 2 1 4 4 H 1.08998 * 115.54943 * 29.33090 * 3 2 1 5 5 C 1.52994 * 117.50255 * 243.62017 * 3 2 1 6 6 C 1.52991 * 60.00271 * 252.50947 * 5 3 2 7 7 H 1.09005 * 117.51905 * 107.47781 * 6 5 3 8 8 C 1.50699 * 117.50467 * 252.50785 * 6 5 3 9 9 O 1.21285 * 119.99872 * 68.61421 * 8 6 5 10 10 N 1.34769 * 120.00328 * 248.62831 * 8 6 5 11 11 C 1.47430 * 125.64601 * 354.94719 * 10 8 6 12 12 C 1.54909 * 104.83182 * 204.09694 * 11 10 8 13 13 C 1.55152 * 101.58499 * 322.99348 * 12 11 10 14 14 C 1.47024 * 125.65350 * 174.91210 * 10 8 6 15 15 H 1.09003 * 109.88047 * 59.40169 * 14 10 8 16 16 C 1.52997 * 109.88323 * 298.39432 * 14 10 8 17 17 N 1.46495 * 109.47522 * 175.34763 * 16 14 10 18 18 C 1.34775 * 120.00451 * 184.90413 * 17 16 14 19 19 O 1.21277 * 119.99771 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99998 * 179.97438 * 18 17 16 21 21 S 1.81005 * 109.47017 * 179.97438 * 20 18 17 22 22 C 1.76194 * 100.00113 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99961 * 359.97438 * 22 21 20 24 24 C 1.38801 * 120.00328 * 180.02562 * 22 21 20 25 25 N 1.31635 * 119.99530 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00307 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47638 * 59.99539 * 26 24 22 28 28 H 1.48498 * 109.47263 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46992 * 299.99655 * 26 24 22 30 30 H 1.08999 * 109.46706 * 60.00171 * 1 2 3 31 31 H 1.09003 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47119 * 299.99510 * 1 2 3 33 33 H 1.08996 * 109.47119 * 240.00490 * 2 1 3 34 34 H 1.08995 * 109.47162 * 119.99969 * 2 1 3 35 35 H 1.09000 * 117.50302 * 145.01640 * 5 3 2 36 36 H 1.09001 * 117.50115 * 0.02562 * 5 3 2 37 37 H 1.09002 * 110.36516 * 85.26041 * 11 10 8 38 38 H 1.09001 * 110.46204 * 322.98716 * 11 10 8 39 39 H 1.09003 * 111.00476 * 81.07124 * 12 11 10 40 40 H 1.09005 * 111.00265 * 204.91732 * 12 11 10 41 41 H 1.08996 * 110.72605 * 153.86545 * 13 12 11 42 42 H 1.09004 * 110.72391 * 277.14003 * 13 12 11 43 43 H 1.09002 * 109.46478 * 295.34601 * 16 14 10 44 44 H 1.08993 * 109.47207 * 55.33707 * 16 14 10 45 45 H 0.97007 * 119.99787 * 4.89449 * 17 16 14 46 46 H 1.08999 * 109.47372 * 299.99608 * 20 18 17 47 47 H 1.09000 * 109.47497 * 60.00069 * 20 18 17 48 48 H 0.96999 * 119.99789 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9076 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1965 8 6 4.0228 2.8620 0.8916 9 8 3.2157 3.6168 1.3916 10 7 5.3422 3.1004 1.0273 11 6 6.4272 2.2158 0.5646 12 6 7.6408 2.5766 1.4571 13 6 7.4707 4.1113 1.6087 14 6 5.9383 4.2859 1.6605 15 1 5.6061 4.3594 2.6961 16 6 5.5316 5.5455 0.8932 17 7 6.0372 6.7286 1.5937 18 6 5.7155 7.9612 1.1536 19 8 5.0078 8.0909 0.1773 20 6 6.2351 9.1782 1.8746 21 16 5.6337 10.6719 1.0479 22 6 6.3698 11.9044 2.0694 23 1 6.9796 11.6138 2.9121 24 6 6.1652 13.2489 1.7917 25 7 5.4216 13.6031 0.7649 26 14 6.9463 14.5556 2.8742 27 1 8.4232 14.4041 2.8457 28 1 6.5775 15.9023 2.3688 29 1 6.4594 14.3992 4.2684 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7212 2.9428 -1.5343 36 1 3.0093 1.1861 -2.0159 37 1 6.6553 2.4114 -0.4832 38 1 6.1517 1.1703 0.7034 39 1 7.5760 2.0789 2.4247 40 1 8.5789 2.3350 0.9573 41 1 7.9302 4.4609 2.5332 42 1 7.8892 4.6327 0.7477 43 1 5.9528 5.5106 -0.1116 44 1 4.4448 5.5974 0.8300 45 1 6.6034 6.6249 2.3746 46 1 5.8836 9.1670 2.9063 47 1 7.3250 9.1703 1.8620 48 1 5.2789 14.5426 0.5706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704322552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = -84.696370 kcal Electronic energy + Delta-G solvation = -26669.798432 eV Core-core repulsion = 22850.083240 eV Total energy + Delta-G solvation = -3819.715192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.63072 -40.61172 -39.22459 -37.72029 -35.88061 -34.59442 -33.16140 -32.45195 -32.02006 -30.03785 -27.70136 -26.50884 -25.77699 -24.66293 -23.27667 -22.11740 -21.78005 -21.28057 -20.10821 -19.64771 -18.45173 -17.92956 -17.79009 -16.97238 -16.88746 -16.72039 -16.32882 -15.83470 -15.66580 -15.44664 -15.18270 -15.07303 -14.77361 -14.52070 -14.24823 -14.14881 -13.91062 -13.56488 -13.41720 -13.36300 -13.18513 -13.03203 -12.97643 -12.86531 -12.64007 -12.28068 -12.08950 -11.99376 -11.95252 -11.76665 -11.67392 -11.28844 -11.13789 -11.13368 -11.03855 -10.82824 -10.30155 -10.25069 -9.80167 -8.69552 -8.35270 -6.14527 1.21308 1.35636 1.43824 1.44588 1.53316 1.54498 1.74479 2.26353 2.34005 2.80435 2.98676 3.29325 3.31051 3.51440 3.64443 3.73325 3.74423 3.83538 3.95041 4.02974 4.07794 4.21922 4.25917 4.26117 4.36603 4.46164 4.46605 4.53903 4.61874 4.67520 4.74467 4.76498 4.89678 4.92610 4.95246 4.99671 5.11179 5.13110 5.19789 5.21033 5.27993 5.34388 5.37007 5.40550 5.47473 6.18768 6.40567 6.41613 7.05159 7.05376 7.16726 8.73892 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.001982 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.669810 B =14126.031125 C =15277.859242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.127 4.127 4 H 0.084 0.916 5 C -0.140 4.140 6 C -0.182 4.182 7 H 0.158 0.842 8 C 0.544 3.456 9 O -0.587 6.587 10 N -0.610 5.610 11 C 0.092 3.908 12 C -0.122 4.122 13 C -0.127 4.127 14 C 0.130 3.870 15 H 0.076 0.924 16 C 0.120 3.880 17 N -0.705 5.705 18 C 0.532 3.468 19 O -0.569 6.569 20 C -0.126 4.126 21 S -0.156 6.156 22 C -0.546 4.546 23 H 0.085 0.915 24 C 0.011 3.989 25 N -0.912 5.912 26 Si 1.001 2.999 27 H -0.260 1.260 28 H -0.279 1.279 29 H -0.262 1.262 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.418 0.582 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 -35.157 1.471 35.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 C -0.146 4.146 4 H 0.102 0.898 5 C -0.177 4.177 6 C -0.203 4.203 7 H 0.175 0.825 8 C 0.335 3.665 9 O -0.468 6.468 10 N -0.343 5.343 11 C -0.029 4.029 12 C -0.159 4.159 13 C -0.165 4.165 14 C 0.025 3.975 15 H 0.094 0.906 16 C -0.005 4.005 17 N -0.361 5.361 18 C 0.318 3.682 19 O -0.447 6.447 20 C -0.277 4.277 21 S 0.071 5.929 22 C -0.694 4.694 23 H 0.103 0.897 24 C -0.193 4.193 25 N -0.549 5.549 26 Si 0.823 3.177 27 H -0.184 1.184 28 H -0.204 1.204 29 H -0.187 1.187 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.256 0.744 46 H 0.128 0.872 47 H 0.136 0.864 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.569 -34.473 0.005 34.657 hybrid contribution 0.793 1.349 1.779 2.369 sum 4.362 -33.124 1.783 33.458 Atomic orbital electron populations 1.21766 0.95396 1.02316 1.01545 1.21137 0.96093 0.91729 1.03315 1.22503 0.90998 0.99693 1.01375 0.89771 1.23175 1.00992 1.02885 0.90688 1.22338 0.97996 0.98079 1.01889 0.82491 1.20131 0.80733 0.86279 0.79379 1.90729 1.54618 1.50979 1.50432 1.48527 1.05316 1.21733 1.58745 1.22711 0.85832 0.94982 0.99385 1.22809 0.98280 0.93893 1.00947 1.22821 0.90187 0.98556 1.04901 1.21745 0.95926 0.83559 0.96232 0.90600 1.21523 0.98304 0.84573 0.96104 1.45505 1.53324 1.03787 1.33434 1.20197 0.79440 0.84820 0.83693 1.90696 1.38608 1.86788 1.28636 1.23347 1.05564 0.95225 1.03582 1.85662 1.68579 0.96508 1.42128 1.23176 1.36701 0.93081 1.16456 0.89668 1.26181 0.95458 1.00574 0.97102 1.70192 1.37769 1.18267 1.28641 0.84963 0.78856 0.75913 0.78003 1.18399 1.20425 1.18705 0.92824 0.91117 0.93734 0.89572 0.90796 0.90670 0.84485 0.90173 0.87911 0.89551 0.87079 0.87600 0.89967 0.92179 0.94646 0.74386 0.87197 0.86425 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.87 71.98 0.71 -1.04 16 2 C -0.09 -0.90 6.22 30.60 0.19 -0.71 16 3 C -0.13 -2.12 5.25 -10.80 -0.06 -2.18 16 4 H 0.08 2.01 7.60 -2.39 -0.02 1.99 16 5 C -0.14 -2.08 9.88 30.59 0.30 -1.78 16 6 C -0.18 -2.81 5.29 -11.54 -0.06 -2.87 16 7 H 0.16 1.24 7.08 -2.38 -0.02 1.23 16 8 C 0.54 13.01 7.36 87.66 0.64 13.66 16 9 O -0.59 -20.53 15.43 -3.05 -0.05 -20.58 16 10 N -0.61 -10.98 3.07 -788.04 -2.42 -13.39 16 11 C 0.09 0.75 6.64 86.85 0.58 1.32 16 12 C -0.12 -0.63 7.08 31.98 0.23 -0.40 16 13 C -0.13 -1.28 6.08 31.78 0.19 -1.08 16 14 C 0.13 2.45 2.93 45.34 0.13 2.59 16 15 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.12 3.39 5.07 86.38 0.44 3.83 16 17 N -0.71 -19.95 5.41 -463.09 -2.50 -22.45 16 18 C 0.53 21.35 7.85 87.66 0.69 22.04 16 19 O -0.57 -28.98 15.86 -3.02 -0.05 -29.03 16 20 C -0.13 -5.18 6.16 71.23 0.44 -4.75 16 21 S -0.16 -8.96 20.57 -56.49 -1.16 -10.12 16 22 C -0.55 -31.74 9.50 67.95 0.65 -31.09 16 23 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 24 C 0.01 0.66 5.49 84.86 0.47 1.13 16 25 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 26 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 29 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.14 1.14 8.03 -2.39 -0.02 1.12 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 0.37 7.11 -2.39 -0.02 0.35 16 39 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.93 7.77 -2.39 -0.02 0.91 16 43 H 0.06 1.74 8.03 -2.39 -0.02 1.72 16 44 H 0.04 1.34 6.89 -2.39 -0.02 1.32 16 45 H 0.42 8.21 8.25 -92.70 -0.76 7.45 16 46 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 47 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 48 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -89.45 407.53 1.86 -87.59 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.19 Total: 20.05 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.53 Total: -1.34 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -4.63 Total: -92.71 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.09 Total: -49.61 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.12 kcal Total: -89.45 1.86 -87.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704322552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.894 kcal (2) G-P(sol) polarization free energy of solvation -89.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds