Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99897 * 2 1 4 4 C 1.53002 * 109.46730 * 239.72574 * 3 2 1 5 5 C 1.52998 * 109.47043 * 359.72323 * 3 2 1 6 6 C 1.52998 * 109.47122 * 119.72467 * 3 2 1 7 7 C 1.50707 * 109.46927 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99850 * 0.02562 * 7 6 3 9 9 N 1.34776 * 119.99464 * 180.02562 * 7 6 3 10 10 C 1.47064 * 136.06384 * 355.01749 * 9 7 6 11 11 C 1.53493 * 87.98674 * 207.08547 * 10 9 7 12 12 C 1.47067 * 136.05330 * 174.64992 * 9 7 6 13 13 H 1.09007 * 113.46780 * 267.69622 * 12 9 7 14 14 C 1.52998 * 113.47020 * 38.12982 * 12 9 7 15 15 N 1.46498 * 109.47572 * 184.10591 * 14 12 9 16 16 C 1.34780 * 120.00113 * 184.98235 * 15 14 12 17 17 O 1.21270 * 120.00244 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99480 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.46903 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00130 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00026 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99847 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46954 * 89.99867 * 24 22 20 26 26 H 1.48498 * 109.46783 * 209.99685 * 24 22 20 27 27 H 1.48496 * 109.47318 * 329.99851 * 24 22 20 28 28 H 1.08000 * 120.00081 * 0.26972 * 1 2 3 29 29 H 1.08000 * 120.00074 * 180.28264 * 1 2 3 30 30 H 1.08000 * 120.00025 * 179.72419 * 2 1 3 31 31 H 1.09001 * 109.47268 * 60.00345 * 4 3 2 32 32 H 1.09002 * 109.46990 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47561 * 299.99505 * 4 3 2 34 34 H 1.08995 * 109.47305 * 60.00726 * 5 3 2 35 35 H 1.09001 * 109.47148 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47575 * 300.00034 * 5 3 2 37 37 H 1.08992 * 109.47706 * 299.99941 * 6 3 2 38 38 H 1.09004 * 109.47190 * 60.00392 * 6 3 2 39 39 H 1.09004 * 113.46538 * 321.86365 * 10 9 7 40 40 H 1.08998 * 113.46930 * 92.24351 * 10 9 7 41 41 H 1.09004 * 114.20619 * 87.51640 * 11 10 9 42 42 H 1.09006 * 114.20756 * 220.14605 * 11 10 9 43 43 H 1.09002 * 109.47326 * 304.10939 * 14 12 9 44 44 H 1.09003 * 109.47393 * 64.10105 * 14 12 9 45 45 H 0.97004 * 119.99482 * 4.98139 * 15 14 12 46 46 H 1.09001 * 109.47466 * 299.99862 * 18 16 15 47 47 H 1.09000 * 109.47212 * 60.00226 * 18 16 15 48 48 H 0.97006 * 120.00486 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9483 1.3831 -1.2458 5 6 1.0693 2.4680 -0.0070 6 6 2.9379 1.3892 1.2527 7 6 3.6919 2.6941 1.2523 8 8 3.5440 3.4796 0.3402 9 7 4.5305 2.9880 2.2656 10 6 4.9007 2.3691 3.5473 11 6 5.2452 3.7728 4.0638 12 6 5.4829 4.0655 2.5733 13 1 6.5005 3.8521 2.2459 14 6 4.9985 5.4498 2.1372 15 7 6.0488 6.4382 2.3944 16 6 5.8089 7.7473 2.1817 17 8 4.7235 8.1071 1.7778 18 6 6.8892 8.7640 2.4469 19 16 6.2645 10.4204 2.0695 20 6 7.6902 11.3806 2.4567 21 1 8.5885 10.8957 2.8093 22 6 7.6592 12.7603 2.3077 23 7 8.7240 13.4777 2.5974 24 14 6.1057 13.5990 1.6971 25 1 5.2468 13.9538 2.8554 26 1 6.4685 14.8323 0.9538 27 1 5.3668 12.6777 0.7969 28 1 -0.5400 0.9353 -0.0044 29 1 -0.5400 -0.9353 0.0046 30 1 1.8500 -0.9353 0.0045 31 1 2.3253 1.3232 -2.1383 32 1 3.4929 2.3273 -1.2461 33 1 3.6566 0.5547 -1.2409 34 1 0.4390 2.4124 0.8805 35 1 1.6142 3.4120 -0.0065 36 1 0.4463 2.4081 -0.8994 37 1 2.3077 1.3336 2.1402 38 1 3.6463 0.5607 1.2576 39 1 4.0594 1.9099 4.0666 40 1 5.7640 1.7075 3.4766 41 1 4.4014 4.3086 4.4988 42 1 6.1450 3.8149 4.6777 43 1 4.7666 5.4348 1.0722 44 1 4.1037 5.7156 2.7000 45 1 6.9168 6.1504 2.7178 46 1 7.1828 8.7171 3.4956 47 1 7.7529 8.5489 1.8178 48 1 8.7023 14.4419 2.4936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705187066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = -15.945329 kcal Electronic energy + Delta-G solvation = -26803.051907 eV Core-core repulsion = 22986.317984 eV Total energy + Delta-G solvation = -3816.733924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13445 -39.48113 -38.85111 -36.95321 -34.51749 -32.42589 -31.79005 -30.81281 -30.04923 -28.05501 -27.55310 -27.50445 -25.59431 -23.43438 -23.26244 -21.96622 -20.59874 -19.15093 -18.49597 -17.92178 -17.44857 -16.71757 -16.47744 -15.89594 -15.72788 -15.48311 -15.28787 -14.97038 -14.84138 -14.44496 -14.23852 -13.85667 -13.76084 -13.43509 -13.24101 -13.00420 -12.92701 -12.78084 -12.43790 -12.39647 -12.03181 -11.91864 -11.83726 -11.52934 -11.42683 -11.25263 -11.25096 -11.04635 -10.99156 -10.93557 -10.58294 -9.84638 -9.77578 -9.71628 -9.49912 -9.08991 -8.99906 -8.92148 -8.47836 -6.90025 -6.27695 -3.99179 1.88472 2.25755 2.35137 2.83280 3.01194 3.33990 3.38975 3.53061 3.70633 3.81481 4.02657 4.34918 4.36300 4.43182 4.49289 4.55419 4.59967 4.69852 4.76802 4.87142 4.90016 4.92604 4.98127 5.11503 5.16191 5.26277 5.30859 5.32541 5.35800 5.45647 5.56056 5.56309 5.72311 5.73593 5.74157 5.80594 5.85063 5.98613 6.02533 6.14625 6.22389 6.30964 6.44918 6.51066 7.35722 7.60693 7.87206 7.95322 8.42566 8.52060 9.18699 10.81449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.001960 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.133660 B =14283.585704 C =15184.733215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.120 4.120 7 C 0.541 3.459 8 O -0.517 6.517 9 N -0.644 5.644 10 C 0.099 3.901 11 C -0.151 4.151 12 C 0.123 3.877 13 H 0.099 0.901 14 C 0.118 3.882 15 N -0.735 5.735 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.123 4.123 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.398 0.602 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 -32.581 1.904 33.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.165 4.165 3 C -0.021 4.021 4 C -0.207 4.207 5 C -0.214 4.214 6 C -0.159 4.159 7 C 0.332 3.668 8 O -0.393 6.393 9 N -0.382 5.382 10 C -0.024 4.024 11 C -0.189 4.189 12 C 0.019 3.981 13 H 0.117 0.883 14 C -0.007 4.007 15 N -0.390 5.390 16 C 0.316 3.684 17 O -0.390 6.390 18 C -0.274 4.274 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.232 0.768 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.475 -31.441 0.536 33.474 hybrid contribution 1.293 -0.279 0.494 1.412 sum -10.182 -31.720 1.030 33.330 Atomic orbital electron populations 1.24049 0.96189 1.02180 1.00687 1.22916 0.95930 0.97441 1.00168 1.19395 0.94982 0.93459 0.94267 1.22061 0.99200 1.03468 0.95961 1.22194 0.98581 0.99583 1.01043 1.21646 0.99066 0.95025 1.00211 1.20324 0.78685 0.88248 0.79558 1.90649 1.63974 1.50287 1.34420 1.49797 1.41014 1.26550 1.20821 1.22978 1.00456 0.96744 0.82211 1.23628 1.03787 0.96142 0.95351 1.22924 0.93523 0.88123 0.93530 0.88289 1.21438 0.91025 0.85379 1.02877 1.45810 1.16415 1.06308 1.70479 1.20265 0.89077 0.82236 0.76784 1.90716 1.25100 1.79574 1.43615 1.23270 1.00125 0.98516 1.05441 1.84834 1.22647 0.96254 1.87825 1.22319 0.98722 0.94296 1.51545 0.89383 1.24708 0.96550 0.96280 0.93753 1.69936 1.28459 1.06754 1.46565 0.86739 0.83642 0.80657 0.80860 1.19208 1.19946 1.15895 0.87706 0.88694 0.87559 0.92795 0.89477 0.93456 0.93194 0.89409 0.92616 0.88998 0.88979 0.90099 0.89474 0.88205 0.88724 0.90041 0.90970 0.76794 0.88462 0.88448 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 13.70 29.01 0.40 -0.87 16 2 C -0.15 -0.99 8.76 -36.03 -0.32 -1.30 16 3 C -0.02 -0.17 0.74 -155.66 -0.11 -0.28 16 4 C -0.15 -1.35 8.16 37.16 0.30 -1.05 16 5 C -0.16 -1.47 6.83 37.16 0.25 -1.22 16 6 C -0.12 -0.83 4.58 -27.88 -0.13 -0.96 16 7 C 0.54 5.31 7.42 -10.98 -0.08 5.23 16 8 O -0.52 -6.98 10.72 5.56 0.06 -6.92 16 9 N -0.64 -5.11 3.56 -177.32 -0.63 -5.75 16 10 C 0.10 0.41 8.41 -8.52 -0.07 0.34 16 11 C -0.15 -0.76 8.03 -26.09 -0.21 -0.97 16 12 C 0.12 0.96 4.09 -72.27 -0.30 0.66 16 13 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 14 C 0.12 1.44 5.40 -4.04 -0.02 1.42 16 15 N -0.73 -9.32 5.55 -60.30 -0.33 -9.66 16 16 C 0.53 9.62 7.85 -10.98 -0.09 9.53 16 17 O -0.52 -11.66 15.86 5.57 0.09 -11.57 16 18 C -0.12 -2.38 6.16 36.01 0.22 -2.15 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 24 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 28 H 0.10 0.71 5.69 -52.49 -0.30 0.41 16 29 H 0.09 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.00 5.51 -51.93 -0.29 0.71 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.42 7.49 -51.93 -0.39 0.03 16 35 H 0.09 1.06 5.51 -51.93 -0.29 0.77 16 36 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.60 7.97 -51.93 -0.41 0.19 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 1.26 7.05 -51.93 -0.37 0.90 16 44 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 45 H 0.40 3.61 8.48 -40.82 -0.35 3.26 16 46 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 47 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -36.50 399.53 -8.50 -45.00 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.84 Total: 0.76 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.68 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.19 Total: -41.28 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.15 Total: -18.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.50 -8.50 -45.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.051 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds