Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99897 * 2 1 4 4 C 1.53002 * 109.46730 * 239.72574 * 3 2 1 5 5 C 1.52998 * 109.47043 * 359.72323 * 3 2 1 6 6 C 1.52998 * 109.47122 * 119.72467 * 3 2 1 7 7 C 1.50707 * 109.46927 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99850 * 0.02562 * 7 6 3 9 9 N 1.34776 * 119.99464 * 180.02562 * 7 6 3 10 10 C 1.47064 * 136.06384 * 355.01749 * 9 7 6 11 11 C 1.53493 * 87.98674 * 207.08547 * 10 9 7 12 12 C 1.47067 * 136.05330 * 174.64992 * 9 7 6 13 13 H 1.09007 * 113.46780 * 267.69622 * 12 9 7 14 14 C 1.52998 * 113.47020 * 38.12982 * 12 9 7 15 15 N 1.46498 * 109.47572 * 184.10591 * 14 12 9 16 16 C 1.34780 * 120.00113 * 184.98235 * 15 14 12 17 17 O 1.21270 * 120.00244 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99480 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.46903 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00130 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00026 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99847 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46954 * 89.99867 * 24 22 20 26 26 H 1.48498 * 109.46783 * 209.99685 * 24 22 20 27 27 H 1.48496 * 109.47318 * 329.99851 * 24 22 20 28 28 H 1.08000 * 120.00081 * 0.26972 * 1 2 3 29 29 H 1.08000 * 120.00074 * 180.28264 * 1 2 3 30 30 H 1.08000 * 120.00025 * 179.72419 * 2 1 3 31 31 H 1.09001 * 109.47268 * 60.00345 * 4 3 2 32 32 H 1.09002 * 109.46990 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47561 * 299.99505 * 4 3 2 34 34 H 1.08995 * 109.47305 * 60.00726 * 5 3 2 35 35 H 1.09001 * 109.47148 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47575 * 300.00034 * 5 3 2 37 37 H 1.08992 * 109.47706 * 299.99941 * 6 3 2 38 38 H 1.09004 * 109.47190 * 60.00392 * 6 3 2 39 39 H 1.09004 * 113.46538 * 321.86365 * 10 9 7 40 40 H 1.08998 * 113.46930 * 92.24351 * 10 9 7 41 41 H 1.09004 * 114.20619 * 87.51640 * 11 10 9 42 42 H 1.09006 * 114.20756 * 220.14605 * 11 10 9 43 43 H 1.09002 * 109.47326 * 304.10939 * 14 12 9 44 44 H 1.09003 * 109.47393 * 64.10105 * 14 12 9 45 45 H 0.97004 * 119.99482 * 4.98139 * 15 14 12 46 46 H 1.09001 * 109.47466 * 299.99862 * 18 16 15 47 47 H 1.09000 * 109.47212 * 60.00226 * 18 16 15 48 48 H 0.97006 * 120.00486 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9483 1.3831 -1.2458 5 6 1.0693 2.4680 -0.0070 6 6 2.9379 1.3892 1.2527 7 6 3.6919 2.6941 1.2523 8 8 3.5440 3.4796 0.3402 9 7 4.5305 2.9880 2.2656 10 6 4.9007 2.3691 3.5473 11 6 5.2452 3.7728 4.0638 12 6 5.4829 4.0655 2.5733 13 1 6.5005 3.8521 2.2459 14 6 4.9985 5.4498 2.1372 15 7 6.0488 6.4382 2.3944 16 6 5.8089 7.7473 2.1817 17 8 4.7235 8.1071 1.7778 18 6 6.8892 8.7640 2.4469 19 16 6.2645 10.4204 2.0695 20 6 7.6902 11.3806 2.4567 21 1 8.5885 10.8957 2.8093 22 6 7.6592 12.7603 2.3077 23 7 8.7240 13.4777 2.5974 24 14 6.1057 13.5990 1.6971 25 1 5.2468 13.9538 2.8554 26 1 6.4685 14.8323 0.9538 27 1 5.3668 12.6777 0.7969 28 1 -0.5400 0.9353 -0.0044 29 1 -0.5400 -0.9353 0.0046 30 1 1.8500 -0.9353 0.0045 31 1 2.3253 1.3232 -2.1383 32 1 3.4929 2.3273 -1.2461 33 1 3.6566 0.5547 -1.2409 34 1 0.4390 2.4124 0.8805 35 1 1.6142 3.4120 -0.0065 36 1 0.4463 2.4081 -0.8994 37 1 2.3077 1.3336 2.1402 38 1 3.6463 0.5607 1.2576 39 1 4.0594 1.9099 4.0666 40 1 5.7640 1.7075 3.4766 41 1 4.4014 4.3086 4.4988 42 1 6.1450 3.8149 4.6777 43 1 4.7666 5.4348 1.0722 44 1 4.1037 5.7156 2.7000 45 1 6.9168 6.1504 2.7178 46 1 7.1828 8.7171 3.4956 47 1 7.7529 8.5489 1.8178 48 1 8.7023 14.4419 2.4936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705187066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = -41.455012 kcal Electronic energy + Delta-G solvation = -26804.158090 eV Core-core repulsion = 22986.317984 eV Total energy + Delta-G solvation = -3817.840106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78457 -40.63549 -39.75473 -37.63489 -35.78841 -34.67591 -32.42167 -31.75229 -31.07735 -28.86241 -28.37180 -28.23995 -27.81843 -24.18224 -23.82018 -22.52046 -21.96781 -20.11468 -19.59058 -19.07314 -18.19772 -17.83919 -17.66566 -17.10664 -16.76713 -16.60566 -16.48067 -16.19854 -15.69162 -15.55741 -15.14541 -14.97425 -14.90783 -14.76846 -14.58083 -14.01989 -13.71636 -13.54076 -13.51350 -13.35930 -13.06369 -13.03737 -12.89561 -12.69118 -12.66236 -12.38509 -12.26064 -12.05811 -11.89403 -11.85144 -11.65591 -11.54151 -11.17826 -11.07850 -10.53656 -10.48590 -10.25882 -10.15147 -9.69624 -9.00986 -8.52178 -6.22925 0.96569 1.29883 1.37355 1.45529 1.52245 1.52722 1.62707 1.77917 2.23711 2.33565 2.72503 2.86084 3.31019 3.53840 3.71084 3.79016 3.87824 3.93707 4.01171 4.02332 4.05984 4.23548 4.34251 4.44227 4.45798 4.49167 4.57070 4.63581 4.68933 4.71458 4.73971 4.79412 4.93613 4.99007 5.01652 5.01849 5.08722 5.17388 5.25772 5.37155 5.42111 5.52306 5.70536 5.75906 5.95013 6.11108 6.42759 6.76885 6.93409 7.15902 7.21444 8.59966 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.001960 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.133660 B =14283.585704 C =15184.733215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.021 4.021 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.111 4.111 7 C 0.529 3.471 8 O -0.566 6.566 9 N -0.651 5.651 10 C 0.105 3.895 11 C -0.141 4.141 12 C 0.118 3.882 13 H 0.122 0.878 14 C 0.125 3.875 15 N -0.704 5.704 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.107 4.107 19 S -0.184 6.184 20 C -0.526 4.526 21 H 0.066 0.934 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.241 1.241 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.421 0.579 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -35.827 3.414 37.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.164 4.164 3 C -0.022 4.022 4 C -0.203 4.203 5 C -0.210 4.210 6 C -0.151 4.151 7 C 0.321 3.679 8 O -0.446 6.446 9 N -0.388 5.388 10 C -0.016 4.016 11 C -0.179 4.179 12 C 0.014 3.986 13 H 0.139 0.861 14 C 0.000 4.000 15 N -0.359 5.359 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.258 4.258 19 S 0.043 5.957 20 C -0.674 4.674 21 H 0.084 0.916 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.186 1.186 26 H -0.183 1.183 27 H -0.165 1.165 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.142 0.858 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.259 0.741 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.163 -34.747 2.103 36.557 hybrid contribution 1.263 0.619 0.051 1.407 sum -9.900 -34.128 2.154 35.600 Atomic orbital electron populations 1.24162 0.96315 1.02569 1.00326 1.22918 0.95929 0.97143 1.00446 1.19379 0.94744 0.93594 0.94471 1.21986 0.99370 1.02497 0.96467 1.22121 0.98690 0.98994 1.01194 1.21645 0.99253 0.94118 1.00046 1.20918 0.78914 0.88773 0.79281 1.90651 1.65588 1.51874 1.36484 1.50000 1.40351 1.26866 1.21542 1.23236 1.02123 0.96521 0.79679 1.23612 1.04609 0.96390 0.93250 1.23129 0.94356 0.85223 0.95857 0.86082 1.21380 0.90427 0.87831 1.00396 1.45483 1.17625 1.04510 1.68294 1.20078 0.87877 0.83662 0.76517 1.90707 1.26914 1.80641 1.46340 1.23244 1.00693 0.94591 1.07246 1.84845 1.22065 1.00579 1.88247 1.22440 0.99019 0.94932 1.51003 0.91592 1.25511 0.99260 0.97037 0.94002 1.70004 1.30162 1.07421 1.47681 0.85905 0.80227 0.79951 0.80533 1.18625 1.18286 1.16504 0.88570 0.87156 0.85667 0.93357 0.92295 0.91924 0.92488 0.92550 0.92974 0.87419 0.86461 0.88363 0.86640 0.89481 0.85848 0.93768 0.92902 0.74109 0.86093 0.86601 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 13.70 67.78 0.93 -1.31 16 2 C -0.15 -1.67 8.76 25.64 0.22 -1.44 16 3 C -0.02 -0.33 0.74 -52.93 -0.04 -0.37 16 4 C -0.15 -2.65 8.16 71.98 0.59 -2.06 16 5 C -0.15 -3.01 6.83 71.98 0.49 -2.51 16 6 C -0.11 -1.33 4.58 29.85 0.14 -1.19 16 7 C 0.53 10.14 7.42 87.66 0.65 10.79 16 8 O -0.57 -16.28 10.72 -3.04 -0.03 -16.32 16 9 N -0.65 -9.10 3.56 -833.30 -2.97 -12.07 16 10 C 0.11 0.44 8.41 83.17 0.70 1.14 16 11 C -0.14 -0.93 8.03 31.01 0.25 -0.68 16 12 C 0.12 1.59 4.09 41.87 0.17 1.77 16 13 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 14 C 0.12 3.05 5.40 86.38 0.47 3.52 16 15 N -0.70 -16.96 5.55 -463.07 -2.57 -19.53 16 16 C 0.53 19.10 7.85 87.66 0.69 19.79 16 17 O -0.57 -26.25 15.86 -3.00 -0.05 -26.30 16 18 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 19 S -0.18 -9.49 18.55 -56.49 -1.05 -10.53 16 20 C -0.53 -30.76 10.04 67.95 0.68 -30.08 16 21 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 22 C 0.05 2.81 5.50 84.86 0.47 3.27 16 23 N -0.91 -55.77 13.97 21.65 0.30 -55.47 16 24 Si 0.91 45.75 27.74 68.60 1.90 47.65 16 25 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.24 -12.24 6.74 99.48 0.67 -11.57 16 28 H 0.10 1.24 5.69 -2.91 -0.02 1.22 16 29 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 30 H 0.13 0.98 8.06 -2.91 -0.02 0.95 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.44 5.51 -2.39 -0.01 1.43 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.98 7.49 -2.39 -0.02 0.97 16 35 H 0.06 1.50 5.51 -2.39 -0.01 1.48 16 36 H 0.05 1.00 7.50 -2.39 -0.02 0.99 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.09 0.85 7.97 -2.38 -0.02 0.83 16 42 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 43 H 0.04 1.45 7.05 -2.39 -0.02 1.43 16 44 H 0.05 1.51 7.90 -2.39 -0.02 1.49 16 45 H 0.42 6.39 8.48 -92.71 -0.79 5.61 16 46 H 0.12 4.01 8.14 -2.40 -0.02 3.99 16 47 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 48 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -84.24 399.53 2.51 -81.74 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.13 Total: 13.78 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 6.84 Total: -2.95 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -5.24 Total: -87.07 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.08 Total: -42.62 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.05 Total: -10.53 kcal Total: -84.24 2.51 -81.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.282 kcal (2) G-P(sol) polarization free energy of solvation -84.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds