Wall clock time and date at job start Sat Apr 11 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47619 * 2 1 4 4 F 1.39905 * 109.47385 * 239.99520 * 2 1 3 5 5 C 1.50703 * 109.46932 * 119.99910 * 2 1 3 6 6 O 1.21290 * 119.99947 * 249.99863 * 5 2 1 7 7 N 1.34772 * 120.00124 * 70.00018 * 5 2 1 8 8 C 1.46926 * 120.63288 * 359.97438 * 7 5 2 9 9 C 1.53196 * 108.89424 * 126.46959 * 8 7 5 10 10 C 1.53035 * 109.31105 * 54.56380 * 9 8 7 11 11 H 1.08997 * 109.45968 * 58.66179 * 10 9 8 12 12 C 1.53004 * 109.45781 * 178.61529 * 10 9 8 13 13 F 1.39899 * 109.47149 * 53.46304 * 12 10 9 14 14 F 1.39901 * 109.47206 * 173.46083 * 12 10 9 15 15 F 1.39900 * 109.47418 * 293.46283 * 12 10 9 16 16 C 1.53043 * 109.54202 * 298.63515 * 10 9 8 17 17 H 1.09000 * 109.49795 * 181.31678 * 16 10 9 18 18 C 1.52997 * 109.49865 * 301.41727 * 16 10 9 19 19 N 1.46498 * 109.47336 * 180.94876 * 18 16 10 20 20 C 1.36940 * 120.00106 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99994 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99756 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99958 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00164 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47284 * 89.99788 * 24 22 20 26 26 H 1.48501 * 109.47153 * 209.99550 * 24 22 20 27 27 H 1.48501 * 109.47116 * 329.99650 * 24 22 20 28 28 C 1.46963 * 120.65575 * 179.82174 * 7 5 2 29 29 H 1.08997 * 109.47028 * 300.00417 * 1 2 3 30 30 H 1.09001 * 109.46730 * 60.00383 * 1 2 3 31 31 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47280 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46396 * 300.00001 * 3 2 1 34 34 H 1.09000 * 109.46878 * 59.99365 * 3 2 1 35 35 H 1.09004 * 109.58521 * 6.61460 * 8 7 5 36 36 H 1.09002 * 109.59151 * 246.32722 * 8 7 5 37 37 H 1.08998 * 109.49914 * 174.51999 * 9 8 7 38 38 H 1.09003 * 109.49184 * 294.58194 * 9 8 7 39 39 H 1.08999 * 109.47139 * 300.94755 * 18 16 10 40 40 H 1.08999 * 109.47568 * 60.94125 * 18 16 10 41 41 H 0.97002 * 119.99678 * 359.97438 * 19 18 16 42 42 H 0.97000 * 120.00339 * 180.02562 * 23 22 20 43 43 H 1.09004 * 109.46655 * 113.74628 * 28 7 5 44 44 H 1.09005 * 109.70985 * 353.46453 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 2.5731 -0.0816 2.1155 7 7 1.8805 -2.0444 1.3476 8 6 1.2270 -2.8197 0.2844 9 6 2.1529 -3.9661 -0.1344 10 6 2.5316 -4.7875 1.1001 11 1 1.6276 -5.1755 1.5694 12 6 3.4286 -5.9539 0.6807 13 9 4.5151 -5.4661 -0.0533 14 9 3.8960 -6.6162 1.8209 15 9 2.6952 -6.8458 -0.1090 16 6 3.2820 -3.8995 2.0954 17 1 3.5718 -4.4908 2.9639 18 6 4.5330 -3.3265 1.4263 19 7 5.2628 -2.4948 2.3863 20 6 6.4238 -1.8735 2.0103 21 1 6.8016 -1.9970 1.0062 22 6 7.1150 -1.0851 2.9198 23 7 8.2306 -0.4875 2.5583 24 14 6.4619 -0.8720 4.6570 25 1 7.0220 -1.9346 5.5301 26 1 6.8643 0.4593 5.1773 27 1 4.9803 -0.9715 4.6444 28 6 2.3684 -2.7523 2.5395 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.0340 -2.1743 -0.5726 36 1 0.2860 -3.2268 0.6545 37 1 1.6392 -4.6048 -0.8528 38 1 3.0545 -3.5573 -0.5906 39 1 5.1731 -4.1433 1.0929 40 1 4.2411 -2.7205 0.5686 41 1 4.9237 -2.3842 3.2884 42 1 8.7139 0.0632 3.1940 43 1 1.5212 -3.1539 3.0956 44 1 2.9278 -2.0637 3.1728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707192446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:11 Heat of formation + Delta-G solvation = -212.162578 kcal Electronic energy + Delta-G solvation = -33268.836605 eV Core-core repulsion = 28335.524147 eV Total energy + Delta-G solvation = -4933.312458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.09331 -48.11982 -47.57790 -47.49818 -40.33269 -38.11354 -34.89254 -33.78336 -33.41258 -31.80601 -30.34877 -27.74110 -27.56478 -26.20937 -24.08035 -23.37006 -22.67642 -21.76680 -20.07438 -19.05258 -18.32719 -18.25576 -18.04902 -17.42357 -16.94179 -16.23885 -16.07553 -15.56188 -15.02061 -14.79413 -14.52707 -14.47238 -14.36659 -14.13410 -13.97406 -13.84844 -13.67299 -13.62261 -13.30348 -13.22032 -12.98706 -12.85202 -12.83427 -12.61153 -12.46386 -12.32303 -12.18850 -12.00031 -11.78435 -11.38205 -11.27065 -11.14158 -10.84931 -10.72970 -10.62775 -10.44573 -10.02817 -9.56032 -9.48287 -8.77355 -8.66897 -7.11079 -5.66323 -3.00991 2.52430 2.74815 2.88938 3.46402 3.51692 3.53700 3.77667 3.91382 4.02274 4.06140 4.23935 4.49475 4.56791 4.64055 4.67181 4.70451 4.84937 4.91088 5.05336 5.12808 5.22747 5.30758 5.36300 5.40289 5.49303 5.55581 5.59666 5.64001 5.67829 5.74261 5.81915 5.87143 6.02961 6.14163 6.14932 6.43364 6.66347 6.72749 7.31469 8.07919 8.13663 8.51627 9.30424 10.03312 10.21847 11.52270 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.007000 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.174109 B = 3998.994184 C = 6528.388493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 C -0.159 4.159 4 F -0.190 7.190 5 C 0.503 3.497 6 O -0.499 6.499 7 N -0.600 5.600 8 C 0.097 3.903 9 C -0.138 4.138 10 C -0.122 4.122 11 H 0.113 0.887 12 C 0.454 3.546 13 F -0.169 7.169 14 F -0.182 7.182 15 F -0.189 7.189 16 C -0.117 4.117 17 H 0.097 0.903 18 C 0.148 3.852 19 N -0.749 5.749 20 C -0.236 4.236 21 H 0.088 0.912 22 C 0.006 3.994 23 N -0.936 5.936 24 Si 0.882 3.118 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.122 3.878 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.032 0.968 41 H 0.359 0.641 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.911 -6.558 -6.365 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.082 3.918 3 C -0.217 4.217 4 F -0.171 7.171 5 C 0.287 3.713 6 O -0.371 6.371 7 N -0.334 5.334 8 C -0.026 4.026 9 C -0.176 4.176 10 C -0.142 4.142 11 H 0.131 0.869 12 C 0.400 3.600 13 F -0.150 7.150 14 F -0.163 7.163 15 F -0.171 7.171 16 C -0.137 4.137 17 H 0.115 0.885 18 C 0.021 3.979 19 N -0.395 5.395 20 C -0.366 4.366 21 H 0.106 0.894 22 C -0.189 4.189 23 N -0.584 5.584 24 Si 0.713 3.287 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.200 1.200 28 C 0.000 4.000 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.192 0.808 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.382 -6.163 -6.050 23.060 hybrid contribution -0.111 -0.232 1.082 1.112 sum -21.493 -6.395 -4.968 22.968 Atomic orbital electron populations 1.22502 0.91827 1.04254 1.04679 1.21181 0.95908 0.93846 0.80821 1.22176 1.04073 0.91880 1.03575 1.92833 1.90251 1.82060 1.51961 1.20700 0.79513 0.82385 0.88658 1.90812 1.40024 1.65059 1.41235 1.47926 1.58867 1.06388 1.20267 1.22077 0.94729 0.93981 0.91838 1.22047 1.02499 0.97198 0.95821 1.22442 0.98723 0.93304 0.99776 0.86861 1.20564 0.80393 0.84038 0.74981 1.93174 1.56737 1.87117 1.77994 1.93182 1.89670 1.82687 1.50763 1.93155 1.77181 1.71181 1.75546 1.21879 0.97076 0.96198 0.98525 0.88509 1.21099 0.89673 0.94517 0.92617 1.42616 1.27393 1.58702 1.10763 1.18968 0.96961 1.21908 0.98714 0.89446 1.24607 0.97008 0.99555 0.97735 1.69703 1.17478 1.36449 1.34803 0.86562 0.78698 0.77190 0.86285 1.21369 1.21854 1.19996 1.21631 0.96957 0.94200 0.87229 0.89998 0.90052 0.90682 0.90083 0.90852 0.89840 0.87306 0.91156 0.89507 0.88736 0.93621 0.95029 0.80793 0.93227 0.91478 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.60 37.16 0.32 -1.10 16 2 C 0.10 1.29 1.20 -91.77 -0.11 1.18 16 3 C -0.16 -1.98 8.28 37.16 0.31 -1.67 16 4 F -0.19 -2.52 14.33 2.25 0.03 -2.48 16 5 C 0.50 7.97 6.77 -10.99 -0.07 7.89 16 6 O -0.50 -10.18 15.40 5.55 0.09 -10.10 16 7 N -0.60 -8.10 2.41 -172.71 -0.42 -8.52 16 8 C 0.10 0.93 4.88 -3.71 -0.02 0.91 16 9 C -0.14 -1.42 4.75 -26.61 -0.13 -1.55 16 10 C -0.12 -1.36 2.02 -90.58 -0.18 -1.54 16 11 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 12 C 0.45 5.82 2.59 37.16 0.10 5.92 16 13 F -0.17 -2.59 13.37 2.25 0.03 -2.56 16 14 F -0.18 -2.53 16.52 2.25 0.04 -2.50 16 15 F -0.19 -2.23 17.04 2.25 0.04 -2.19 16 16 C -0.12 -1.70 2.11 -90.48 -0.19 -1.89 16 17 H 0.10 1.38 7.61 -51.93 -0.40 0.98 16 18 C 0.15 2.92 4.53 -4.04 -0.02 2.90 16 19 N -0.75 -18.45 5.07 -59.91 -0.30 -18.75 16 20 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 21 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 23 N -0.94 -30.62 13.97 55.49 0.78 -29.84 16 24 Si 0.88 23.43 27.74 -169.99 -4.71 18.72 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 27 H -0.27 -6.96 6.52 56.52 0.37 -6.59 16 28 C 0.12 1.74 5.72 -3.67 -0.02 1.72 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.51 5.99 -51.93 -0.31 0.20 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16 35 H 0.11 1.00 3.86 -51.93 -0.20 0.80 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.69 7.95 -51.93 -0.41 0.28 16 38 H 0.09 1.23 5.92 -51.93 -0.31 0.92 16 39 H 0.05 0.95 5.41 -51.93 -0.28 0.67 16 40 H 0.03 0.66 6.01 -51.93 -0.31 0.35 16 41 H 0.36 8.69 4.45 -40.82 -0.18 8.51 16 42 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 1.96 5.69 -51.93 -0.30 1.66 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -35.96 348.24 -5.12 -41.09 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.66 Total: 6.17 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.27 Total: 5.72 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.06 Total: -57.12 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 0.14 Total: -9.73 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.71 Total: 18.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.96 -5.12 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707192446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.076 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds