Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47619 * 2 1 4 4 F 1.39905 * 109.47385 * 239.99520 * 2 1 3 5 5 C 1.50703 * 109.46932 * 119.99910 * 2 1 3 6 6 O 1.21290 * 119.99947 * 249.99863 * 5 2 1 7 7 N 1.34772 * 120.00124 * 70.00018 * 5 2 1 8 8 C 1.46926 * 120.63288 * 359.97438 * 7 5 2 9 9 C 1.53196 * 108.89424 * 126.46959 * 8 7 5 10 10 C 1.53035 * 109.31105 * 54.56380 * 9 8 7 11 11 H 1.08997 * 109.45968 * 58.66179 * 10 9 8 12 12 C 1.53004 * 109.45781 * 178.61529 * 10 9 8 13 13 F 1.39899 * 109.47149 * 53.46304 * 12 10 9 14 14 F 1.39901 * 109.47206 * 173.46083 * 12 10 9 15 15 F 1.39900 * 109.47418 * 293.46283 * 12 10 9 16 16 C 1.53043 * 109.54202 * 298.63515 * 10 9 8 17 17 H 1.09000 * 109.49795 * 181.31678 * 16 10 9 18 18 C 1.52997 * 109.49865 * 301.41727 * 16 10 9 19 19 N 1.46498 * 109.47336 * 180.94876 * 18 16 10 20 20 C 1.36940 * 120.00106 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99994 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99756 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99958 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00164 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47284 * 89.99788 * 24 22 20 26 26 H 1.48501 * 109.47153 * 209.99550 * 24 22 20 27 27 H 1.48501 * 109.47116 * 329.99650 * 24 22 20 28 28 C 1.46963 * 120.65575 * 179.82174 * 7 5 2 29 29 H 1.08997 * 109.47028 * 300.00417 * 1 2 3 30 30 H 1.09001 * 109.46730 * 60.00383 * 1 2 3 31 31 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47280 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46396 * 300.00001 * 3 2 1 34 34 H 1.09000 * 109.46878 * 59.99365 * 3 2 1 35 35 H 1.09004 * 109.58521 * 6.61460 * 8 7 5 36 36 H 1.09002 * 109.59151 * 246.32722 * 8 7 5 37 37 H 1.08998 * 109.49914 * 174.51999 * 9 8 7 38 38 H 1.09003 * 109.49184 * 294.58194 * 9 8 7 39 39 H 1.08999 * 109.47139 * 300.94755 * 18 16 10 40 40 H 1.08999 * 109.47568 * 60.94125 * 18 16 10 41 41 H 0.97002 * 119.99678 * 359.97438 * 19 18 16 42 42 H 0.97000 * 120.00339 * 180.02562 * 23 22 20 43 43 H 1.09004 * 109.46655 * 113.74628 * 28 7 5 44 44 H 1.09005 * 109.70985 * 353.46453 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 2.5731 -0.0816 2.1155 7 7 1.8805 -2.0444 1.3476 8 6 1.2270 -2.8197 0.2844 9 6 2.1529 -3.9661 -0.1344 10 6 2.5316 -4.7875 1.1001 11 1 1.6276 -5.1755 1.5694 12 6 3.4286 -5.9539 0.6807 13 9 4.5151 -5.4661 -0.0533 14 9 3.8960 -6.6162 1.8209 15 9 2.6952 -6.8458 -0.1090 16 6 3.2820 -3.8995 2.0954 17 1 3.5718 -4.4908 2.9639 18 6 4.5330 -3.3265 1.4263 19 7 5.2628 -2.4948 2.3863 20 6 6.4238 -1.8735 2.0103 21 1 6.8016 -1.9970 1.0062 22 6 7.1150 -1.0851 2.9198 23 7 8.2306 -0.4875 2.5583 24 14 6.4619 -0.8720 4.6570 25 1 7.0220 -1.9346 5.5301 26 1 6.8643 0.4593 5.1773 27 1 4.9803 -0.9715 4.6444 28 6 2.3684 -2.7523 2.5395 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.0340 -2.1743 -0.5726 36 1 0.2860 -3.2268 0.6545 37 1 1.6392 -4.6048 -0.8528 38 1 3.0545 -3.5573 -0.5906 39 1 5.1731 -4.1433 1.0929 40 1 4.2411 -2.7205 0.5686 41 1 4.9237 -2.3842 3.2884 42 1 8.7139 0.0632 3.1940 43 1 1.5212 -3.1539 3.0956 44 1 2.9278 -2.0637 3.1728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707192446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -237.061568 kcal Electronic energy + Delta-G solvation = -33269.916306 eV Core-core repulsion = 28335.524147 eV Total energy + Delta-G solvation = -4934.392160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.13443 -49.12738 -48.61951 -48.55457 -41.44372 -39.31293 -36.61442 -35.00756 -34.43630 -33.58641 -31.91940 -28.73618 -28.52742 -27.73473 -25.32392 -24.57194 -23.92100 -23.24192 -21.24703 -20.24379 -19.72303 -19.33511 -19.28163 -18.85230 -18.01871 -17.35000 -17.10853 -16.85914 -16.45111 -16.04238 -15.88612 -15.70358 -15.52441 -15.31336 -15.19286 -15.01313 -14.90693 -14.70898 -14.65442 -14.44269 -14.22713 -14.03316 -13.94527 -13.80210 -13.40997 -13.32593 -13.19762 -13.14212 -13.07321 -13.00296 -12.73984 -12.32884 -12.28687 -12.14499 -11.94282 -11.84483 -11.68201 -11.56313 -10.99104 -10.69831 -9.73292 -9.29116 -8.06956 -5.38546 1.29312 1.35887 1.37123 1.41922 1.76032 1.88323 2.43926 2.79376 2.90593 3.05473 3.08777 3.24987 3.41038 3.51674 3.56935 3.62569 3.75287 3.84986 3.87785 4.02922 4.06909 4.29060 4.41294 4.55543 4.56329 4.58542 4.63473 4.67030 4.70021 4.79078 4.83435 4.97120 5.01961 5.03889 5.08282 5.14692 5.22135 5.46423 5.69102 6.16444 6.25172 7.00961 7.03957 7.80007 7.98099 9.15123 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.007000 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.174109 B = 3998.994184 C = 6528.388493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 C -0.160 4.160 4 F -0.197 7.197 5 C 0.489 3.511 6 O -0.560 6.560 7 N -0.597 5.597 8 C 0.092 3.908 9 C -0.137 4.137 10 C -0.110 4.110 11 H 0.163 0.837 12 C 0.450 3.550 13 F -0.191 7.191 14 F -0.189 7.189 15 F -0.179 7.179 16 C -0.110 4.110 17 H 0.104 0.896 18 C 0.147 3.853 19 N -0.750 5.750 20 C -0.227 4.227 21 H 0.048 0.952 22 C -0.061 4.061 23 N -0.984 5.984 24 Si 0.953 3.047 25 H -0.271 1.271 26 H -0.297 1.297 27 H -0.258 1.258 28 C 0.121 3.879 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.017 0.983 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.116 0.884 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.389 -8.302 -6.009 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.218 4.218 4 F -0.178 7.178 5 C 0.275 3.725 6 O -0.438 6.438 7 N -0.330 5.330 8 C -0.029 4.029 9 C -0.175 4.175 10 C -0.130 4.130 11 H 0.181 0.819 12 C 0.397 3.603 13 F -0.173 7.173 14 F -0.171 7.171 15 F -0.161 7.161 16 C -0.129 4.129 17 H 0.122 0.878 18 C 0.022 3.978 19 N -0.396 5.396 20 C -0.358 4.358 21 H 0.066 0.934 22 C -0.253 4.253 23 N -0.635 5.635 24 Si 0.780 3.220 25 H -0.197 1.197 26 H -0.224 1.224 27 H -0.183 1.183 28 C -0.002 4.002 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.197 0.803 42 H 0.066 0.934 43 H 0.133 0.867 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.917 -7.984 -5.736 27.719 hybrid contribution 1.333 0.235 0.814 1.580 sum -24.584 -7.749 -4.921 26.242 Atomic orbital electron populations 1.22506 0.87588 1.06086 1.06070 1.21300 0.98884 0.92605 0.79067 1.22193 1.01369 0.93050 1.05150 1.92822 1.90719 1.82190 1.52060 1.21425 0.78766 0.83221 0.89069 1.90773 1.42881 1.66552 1.43548 1.48104 1.57978 1.05994 1.20884 1.22441 0.95869 0.93352 0.91221 1.22078 1.01602 0.97814 0.96017 1.22506 0.99272 0.91851 0.99348 0.81942 1.20886 0.80087 0.84719 0.74655 1.93137 1.58133 1.87447 1.78547 1.93168 1.89867 1.82930 1.51117 1.93172 1.76680 1.70929 1.75284 1.21767 0.94915 0.96923 0.99299 0.87791 1.21193 0.91728 0.93137 0.91783 1.42604 1.26270 1.58806 1.11878 1.18918 0.98347 1.21519 0.96985 0.93383 1.25435 0.97512 0.99823 1.02488 1.69885 1.19273 1.37885 1.36448 0.85430 0.78856 0.77012 0.80652 1.19713 1.22399 1.18334 1.21636 0.98103 0.92986 0.87475 0.89468 0.87801 0.88645 0.94308 0.87779 0.89728 0.86739 0.86263 0.86081 0.92359 0.94708 0.96510 0.80286 0.93419 0.86655 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.60 71.98 0.62 -1.46 16 2 C 0.10 2.43 1.20 -11.54 -0.01 2.41 16 3 C -0.16 -4.03 8.28 71.98 0.60 -3.44 16 4 F -0.20 -5.01 14.33 44.97 0.64 -4.37 16 5 C 0.49 15.30 6.77 87.66 0.59 15.89 16 6 O -0.56 -23.63 15.40 -3.06 -0.05 -23.68 16 7 N -0.60 -14.76 2.41 -818.71 -1.97 -16.73 16 8 C 0.09 1.37 4.88 86.36 0.42 1.79 16 9 C -0.14 -2.35 4.75 30.67 0.15 -2.21 16 10 C -0.11 -2.02 2.02 -10.77 -0.02 -2.04 16 11 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 12 C 0.45 10.48 2.59 71.98 0.19 10.66 16 13 F -0.19 -5.84 13.37 44.97 0.60 -5.24 16 14 F -0.19 -4.88 16.52 44.97 0.74 -4.14 16 15 F -0.18 -3.63 17.04 44.97 0.77 -2.87 16 16 C -0.11 -2.95 2.11 -10.70 -0.02 -2.97 16 17 H 0.10 2.69 7.61 -2.39 -0.02 2.67 16 18 C 0.15 5.93 4.53 86.38 0.39 6.32 16 19 N -0.75 -37.93 5.07 -343.47 -1.74 -39.67 16 20 C -0.23 -14.09 10.47 84.03 0.88 -13.21 16 21 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 22 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 23 N -0.98 -67.22 13.97 21.65 0.30 -66.92 16 24 Si 0.95 49.84 27.74 68.60 1.90 51.74 16 25 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 27 H -0.26 -12.72 6.52 99.48 0.65 -12.07 16 28 C 0.12 3.14 5.72 86.37 0.49 3.63 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.81 5.99 -2.39 -0.01 0.80 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.07 7.99 -2.39 -0.02 2.05 16 35 H 0.11 1.64 3.86 -2.38 -0.01 1.63 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.12 1.31 7.95 -2.39 -0.02 1.29 16 38 H 0.06 1.46 5.92 -2.39 -0.01 1.45 16 39 H 0.04 1.50 5.41 -2.39 -0.01 1.49 16 40 H 0.02 0.74 6.01 -2.39 -0.01 0.72 16 41 H 0.36 17.70 4.45 -92.71 -0.41 17.29 16 42 H 0.26 16.69 8.31 -92.71 -0.77 15.92 16 43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 2.31 5.69 -2.38 -0.01 2.29 16 Total: -1.00 -86.20 348.24 6.52 -79.68 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.58 Total: 20.26 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.74 Total: 11.93 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -3.41 Total: -123.32 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 9 Polarization: -19.37 SS G_CDS: 2.75 Total: -16.62 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.90 Total: 51.74 kcal Total: -86.20 6.52 -79.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707192446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.379 kcal (2) G-P(sol) polarization free energy of solvation -86.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds