Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.50702 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72352 * 4 3 2 7 7 C 1.49322 * 127.11578 * 359.96708 * 6 4 3 8 8 C 1.56159 * 106.51516 * 172.63265 * 7 6 4 9 9 C 1.52810 * 101.36627 * 336.58266 * 8 7 6 10 10 N 1.46496 * 112.93341 * 282.18800 * 9 8 7 11 11 C 1.34777 * 120.00557 * 289.92600 * 10 9 8 12 12 O 1.21278 * 119.99385 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00155 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.46677 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99845 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00148 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00404 * 179.97438 * 15 14 13 18 18 N 1.31635 * 119.99385 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00288 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47170 * 90.00225 * 19 17 15 21 21 H 1.48504 * 109.47190 * 209.99995 * 19 17 15 22 22 H 1.48496 * 109.47161 * 329.99805 * 19 17 15 23 23 C 1.52565 * 119.43518 * 146.59040 * 9 8 7 24 24 C 1.56031 * 102.46592 * 211.56561 * 23 9 8 25 25 C 1.55885 * 105.88765 * 25.46597 * 24 23 9 26 26 C 1.41779 * 127.11569 * 180.27624 * 6 4 3 27 27 H 1.08995 * 105.76979 * 107.33949 * 26 6 4 28 28 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46965 * 299.99512 * 1 2 3 30 30 H 1.09003 * 109.47184 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00065 * 2 1 3 32 32 H 1.09000 * 109.47504 * 120.00369 * 2 1 3 33 33 H 1.09004 * 109.47066 * 60.00025 * 3 2 1 34 34 H 1.08994 * 109.47405 * 299.99855 * 3 2 1 35 35 H 1.09003 * 110.03978 * 292.03705 * 7 6 4 36 36 H 1.09003 * 110.03898 * 53.49062 * 7 6 4 37 37 H 1.08996 * 111.20906 * 218.46662 * 8 7 6 38 38 H 1.09008 * 110.82819 * 94.52968 * 8 7 6 39 39 H 0.97005 * 119.99953 * 109.91714 * 10 9 8 40 40 H 1.08998 * 109.46727 * 299.99612 * 13 11 10 41 41 H 1.08994 * 109.47400 * 59.99927 * 13 11 10 42 42 H 0.97005 * 119.99397 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.80522 * 93.32273 * 23 9 8 44 44 H 1.08996 * 110.97689 * 329.89096 * 23 9 8 45 45 H 1.09000 * 110.16991 * 266.35898 * 24 23 9 46 46 H 1.09000 * 110.16479 * 144.56285 * 24 23 9 47 47 H 1.09002 * 110.48153 * 246.49708 * 25 24 23 48 48 H 1.08997 * 110.59978 * 123.91165 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 -0.0049 7 6 3.6401 3.9853 -0.0127 8 6 4.8352 4.9727 0.1752 9 6 5.8644 4.0733 0.8585 10 7 5.5895 3.8712 2.2832 11 6 5.7491 4.8896 3.1515 12 8 6.1207 5.9732 2.7534 13 6 5.4657 4.6818 4.6170 14 16 5.7715 6.2233 5.5150 15 6 5.3728 5.7079 7.1521 16 1 5.0523 4.6929 7.3357 17 6 5.4704 6.6061 8.2057 18 7 5.8605 7.8433 7.9817 19 14 5.0483 6.0595 9.9413 20 1 6.2677 5.5318 10.6043 21 1 4.5275 7.2172 10.7120 22 1 4.0142 4.9952 9.8873 23 6 7.3489 4.2837 0.5763 24 6 7.9245 2.8393 0.7065 25 6 6.7379 1.8774 0.3953 26 6 5.6277 2.7853 -0.0106 27 1 5.8791 3.1296 -1.0137 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.1418 4.1750 -0.9634 36 1 2.9328 4.0968 0.8092 37 1 4.5585 5.8092 0.8169 38 1 5.2019 5.3254 -0.7889 39 1 5.2925 3.0044 2.6017 40 1 4.4249 4.3853 4.7472 41 1 6.1177 3.8997 5.0058 42 1 5.9290 8.4709 8.7182 43 1 7.7940 4.9463 1.3185 44 1 7.5034 4.6729 -0.4300 45 1 8.2897 2.6701 1.7195 46 1 8.7288 2.6889 -0.0137 47 1 6.4620 1.3118 1.2853 48 1 6.9957 1.2017 -0.4203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718701645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -68.796257 kcal Electronic energy + Delta-G solvation = -28163.378117 eV Core-core repulsion = 24344.352405 eV Total energy + Delta-G solvation = -3819.025712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62702 -39.37036 -38.10762 -35.31688 -34.64460 -33.38713 -32.44508 -31.47118 -29.19556 -28.92956 -27.31805 -26.77577 -25.48947 -23.46136 -22.13038 -21.41669 -20.94744 -19.34687 -18.86717 -17.88702 -17.06819 -16.83844 -16.58115 -16.13007 -15.54137 -15.31400 -15.20674 -14.81910 -14.54717 -14.22255 -13.92181 -13.78917 -13.52799 -13.25431 -13.16558 -13.00395 -12.63947 -12.50910 -12.43126 -12.17132 -12.04773 -11.83800 -11.65962 -11.49102 -11.38443 -11.10545 -11.06689 -11.04367 -11.03869 -10.79043 -10.73642 -10.61120 -9.96661 -9.83266 -9.36840 -9.08758 -8.93564 -8.78202 -8.26274 -6.51907 -6.23744 -3.94105 2.37299 2.58959 2.97992 3.06607 3.21160 3.26460 3.30250 3.64622 3.72656 4.18872 4.20250 4.43700 4.55402 4.58592 4.65147 4.68790 4.84907 4.91512 5.03180 5.10173 5.11669 5.14469 5.18385 5.22517 5.29597 5.32512 5.35074 5.40807 5.48024 5.54687 5.67183 5.70836 5.72971 5.82659 5.84220 5.85908 5.92364 5.96973 6.01426 6.05567 6.09768 6.12689 6.27691 6.69764 7.27087 7.57975 7.69614 7.94421 8.33445 8.59586 9.21951 10.83627 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002904 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.029832 B = 9640.157433 C =11052.803982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.527 3.473 5 O -0.536 6.536 6 N -0.601 5.601 7 C 0.106 3.894 8 C -0.129 4.129 9 C 0.152 3.848 10 N -0.716 5.716 11 C 0.536 3.464 12 O -0.513 6.513 13 C -0.154 4.154 14 S -0.057 6.057 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.101 4.101 26 C 0.114 3.886 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.398 0.602 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -12.272 -20.123 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.177 4.177 4 C 0.317 3.683 5 O -0.413 6.413 6 N -0.335 5.335 7 C -0.016 4.016 8 C -0.167 4.167 9 C 0.064 3.936 10 N -0.370 5.370 11 C 0.323 3.677 12 O -0.387 6.387 13 C -0.305 4.305 14 S 0.169 5.831 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.139 4.139 26 C 0.007 3.993 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.232 0.768 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.917 -10.931 -20.734 23.949 hybrid contribution -0.915 -1.905 1.754 2.746 sum -5.832 -12.835 -18.980 23.643 Atomic orbital electron populations 1.21794 0.95395 1.02001 1.01868 1.21283 0.95343 0.94564 1.03513 1.21708 0.91317 1.00223 1.04437 1.20521 0.90230 0.81972 0.75582 1.90715 1.70499 1.30284 1.49762 1.47531 1.06002 1.06344 1.73576 1.22956 0.96968 0.79478 1.02165 1.22736 0.94450 0.97861 1.01701 1.21641 0.94742 0.95669 0.81592 1.45670 1.71118 1.14434 1.05765 1.20257 0.76320 0.83690 0.87447 1.90688 1.44236 1.24659 1.79077 1.23540 1.04597 1.07958 0.94377 1.85344 1.88408 1.07350 1.01971 1.22869 1.52658 1.00133 0.92738 0.90990 1.24986 0.94702 0.94511 0.99352 1.70019 1.44024 1.03728 1.32533 0.86174 0.78740 0.78280 0.82358 1.20261 1.20743 1.19698 1.22339 0.93480 0.97274 1.02791 1.22840 0.96973 0.93381 1.02326 1.21288 0.92907 0.97324 1.02359 1.20821 0.82911 0.95833 0.99698 0.92219 0.92382 0.92532 0.92725 0.91351 0.91184 0.88789 0.89025 0.90584 0.90378 0.88352 0.89409 0.76812 0.89444 0.89368 0.92186 0.89402 0.90333 0.90986 0.91218 0.91150 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.11 -0.87 5.22 -26.74 -0.14 -1.01 16 3 C -0.14 -1.05 5.01 -27.88 -0.14 -1.19 16 4 C 0.53 5.69 7.87 -10.98 -0.09 5.61 16 5 O -0.54 -7.59 15.78 5.55 0.09 -7.51 16 6 N -0.60 -5.88 3.21 -164.79 -0.53 -6.41 16 7 C 0.11 0.86 6.68 -0.78 -0.01 0.85 16 8 C -0.13 -1.27 6.04 -25.14 -0.15 -1.42 16 9 C 0.15 1.70 0.29 -129.87 -0.04 1.67 16 10 N -0.72 -9.33 4.84 -45.81 -0.22 -9.55 16 11 C 0.54 9.36 7.34 -10.99 -0.08 9.28 16 12 O -0.51 -10.57 14.04 5.56 0.08 -10.50 16 13 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 14 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 15 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 19 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C -0.12 -1.33 5.92 -25.33 -0.15 -1.48 16 24 C -0.12 -1.15 6.84 -23.57 -0.16 -1.32 16 25 C -0.10 -1.04 5.84 -27.13 -0.16 -1.20 16 26 C 0.11 1.16 2.58 -70.07 -0.18 0.98 16 27 H 0.06 0.58 7.44 -51.93 -0.39 0.20 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.21 7.23 -51.93 -0.38 0.83 16 38 H 0.09 0.72 8.13 -51.92 -0.42 0.29 16 39 H 0.40 4.77 8.62 -40.82 -0.35 4.42 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 1.23 7.03 -51.93 -0.36 0.87 16 44 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -34.04 397.96 -9.80 -43.84 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.20 Total: 2.21 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.50 Total: -5.45 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.02 Total: -41.13 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.04 -9.80 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718701645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.958 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds