Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.50702 * 109.47159 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72352 * 4 3 2 7 7 C 1.49322 * 127.11578 * 359.96708 * 6 4 3 8 8 C 1.56159 * 106.51516 * 172.63265 * 7 6 4 9 9 C 1.52810 * 101.36627 * 336.58266 * 8 7 6 10 10 N 1.46496 * 112.93341 * 282.18800 * 9 8 7 11 11 C 1.34777 * 120.00557 * 289.92600 * 10 9 8 12 12 O 1.21278 * 119.99385 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00155 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.46677 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99845 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00148 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00404 * 179.97438 * 15 14 13 18 18 N 1.31635 * 119.99385 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00288 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47170 * 90.00225 * 19 17 15 21 21 H 1.48504 * 109.47190 * 209.99995 * 19 17 15 22 22 H 1.48496 * 109.47161 * 329.99805 * 19 17 15 23 23 C 1.52565 * 119.43518 * 146.59040 * 9 8 7 24 24 C 1.56031 * 102.46592 * 211.56561 * 23 9 8 25 25 C 1.55885 * 105.88765 * 25.46597 * 24 23 9 26 26 C 1.41779 * 127.11569 * 180.27624 * 6 4 3 27 27 H 1.08995 * 105.76979 * 107.33949 * 26 6 4 28 28 H 1.09001 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46965 * 299.99512 * 1 2 3 30 30 H 1.09003 * 109.47184 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00065 * 2 1 3 32 32 H 1.09000 * 109.47504 * 120.00369 * 2 1 3 33 33 H 1.09004 * 109.47066 * 60.00025 * 3 2 1 34 34 H 1.08994 * 109.47405 * 299.99855 * 3 2 1 35 35 H 1.09003 * 110.03978 * 292.03705 * 7 6 4 36 36 H 1.09003 * 110.03898 * 53.49062 * 7 6 4 37 37 H 1.08996 * 111.20906 * 218.46662 * 8 7 6 38 38 H 1.09008 * 110.82819 * 94.52968 * 8 7 6 39 39 H 0.97005 * 119.99953 * 109.91714 * 10 9 8 40 40 H 1.08998 * 109.46727 * 299.99612 * 13 11 10 41 41 H 1.08994 * 109.47400 * 59.99927 * 13 11 10 42 42 H 0.97005 * 119.99397 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.80522 * 93.32273 * 23 9 8 44 44 H 1.08996 * 110.97689 * 329.89096 * 23 9 8 45 45 H 1.09000 * 110.16991 * 266.35898 * 24 23 9 46 46 H 1.09000 * 110.16479 * 144.56285 * 24 23 9 47 47 H 1.09002 * 110.48153 * 246.49708 * 25 24 23 48 48 H 1.08997 * 110.59978 * 123.91165 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 -0.0049 7 6 3.6401 3.9853 -0.0127 8 6 4.8352 4.9727 0.1752 9 6 5.8644 4.0733 0.8585 10 7 5.5895 3.8712 2.2832 11 6 5.7491 4.8896 3.1515 12 8 6.1207 5.9732 2.7534 13 6 5.4657 4.6818 4.6170 14 16 5.7715 6.2233 5.5150 15 6 5.3728 5.7079 7.1521 16 1 5.0523 4.6929 7.3357 17 6 5.4704 6.6061 8.2057 18 7 5.8605 7.8433 7.9817 19 14 5.0483 6.0595 9.9413 20 1 6.2677 5.5318 10.6043 21 1 4.5275 7.2172 10.7120 22 1 4.0142 4.9952 9.8873 23 6 7.3489 4.2837 0.5763 24 6 7.9245 2.8393 0.7065 25 6 6.7379 1.8774 0.3953 26 6 5.6277 2.7853 -0.0106 27 1 5.8791 3.1296 -1.0137 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.1418 4.1750 -0.9634 36 1 2.9328 4.0968 0.8092 37 1 4.5585 5.8092 0.8169 38 1 5.2019 5.3254 -0.7889 39 1 5.2925 3.0044 2.6017 40 1 4.4249 4.3853 4.7472 41 1 6.1177 3.8997 5.0058 42 1 5.9290 8.4709 8.7182 43 1 7.7940 4.9463 1.3185 44 1 7.5034 4.6729 -0.4300 45 1 8.2897 2.6701 1.7195 46 1 8.7288 2.6889 -0.0137 47 1 6.4620 1.3118 1.2853 48 1 6.9957 1.2017 -0.4203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718701645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -90.617938 kcal Electronic energy + Delta-G solvation = -28164.324376 eV Core-core repulsion = 24344.352405 eV Total energy + Delta-G solvation = -3819.971971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53097 -40.42444 -39.27856 -36.15508 -35.27569 -34.62830 -34.54407 -32.45010 -30.44513 -29.83763 -28.08339 -27.74691 -27.48970 -24.21153 -22.92178 -22.52943 -21.68921 -20.46405 -19.95564 -19.56935 -17.95564 -17.87244 -17.63247 -17.11125 -16.88544 -16.66824 -16.37774 -15.99594 -15.77120 -15.65254 -14.96853 -14.71199 -14.61925 -14.43558 -14.20898 -13.90880 -13.80271 -13.68792 -13.23341 -13.16383 -12.98822 -12.90543 -12.80290 -12.65800 -12.63665 -12.47313 -12.27579 -12.05513 -11.97393 -11.73662 -11.63615 -11.62677 -11.45759 -11.15121 -10.86180 -10.75298 -10.28620 -10.11733 -9.59414 -8.65683 -8.35677 -6.12618 1.25779 1.41137 1.45497 1.56048 1.57289 1.64632 1.83963 2.22215 2.27821 2.87063 2.98496 3.30468 3.45517 3.65898 3.74962 3.81403 3.98674 4.02664 4.08831 4.09954 4.18075 4.25665 4.27765 4.37582 4.48956 4.51667 4.53752 4.60708 4.68538 4.69258 4.72672 4.78145 4.86519 4.95546 4.99629 5.06943 5.13417 5.17479 5.22643 5.25535 5.27432 5.40998 5.41188 5.48037 5.60922 6.18829 6.44319 6.50948 7.06083 7.14126 7.24854 8.73306 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002904 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.029832 B = 9640.157433 C =11052.803982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.131 4.131 4 C 0.522 3.478 5 O -0.576 6.576 6 N -0.600 5.600 7 C 0.110 3.890 8 C -0.128 4.128 9 C 0.140 3.860 10 N -0.695 5.695 11 C 0.543 3.457 12 O -0.547 6.547 13 C -0.133 4.133 14 S -0.137 6.137 15 C -0.549 4.549 16 H 0.079 0.921 17 C 0.016 3.984 18 N -0.909 5.909 19 Si 0.996 3.004 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.120 4.120 24 C -0.110 4.110 25 C -0.097 4.097 26 C 0.117 3.883 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.405 0.595 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.271 0.729 43 H 0.054 0.946 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.054 0.946 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -13.509 -21.130 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.170 4.170 4 C 0.313 3.687 5 O -0.456 6.456 6 N -0.333 5.333 7 C -0.011 4.011 8 C -0.166 4.166 9 C 0.053 3.947 10 N -0.347 5.347 11 C 0.329 3.671 12 O -0.424 6.424 13 C -0.284 4.284 14 S 0.090 5.910 15 C -0.697 4.697 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.546 5.546 19 Si 0.817 3.183 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.159 4.159 24 C -0.148 4.148 25 C -0.135 4.135 26 C 0.010 3.990 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.240 0.760 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.073 0.927 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.383 -12.186 -21.770 25.752 hybrid contribution -0.428 -1.576 1.954 2.547 sum -6.811 -13.762 -19.815 25.069 Atomic orbital electron populations 1.21760 0.93840 1.02361 1.02639 1.21246 0.96606 0.94701 1.02047 1.21748 0.88903 1.00221 1.06165 1.21088 0.91429 0.81467 0.74679 1.90700 1.71485 1.31716 1.51702 1.47630 1.05809 1.06879 1.72952 1.23061 0.96131 0.77813 1.04099 1.22745 0.94703 0.97189 1.02000 1.21921 0.95410 0.97259 0.80144 1.45422 1.69436 1.13476 1.06411 1.19823 0.76325 0.83997 0.86933 1.90683 1.46175 1.26222 1.79339 1.23386 1.05813 1.04040 0.95179 1.85446 1.88996 1.13074 1.03454 1.23201 1.52652 1.00534 0.93288 0.90323 1.26077 0.94267 0.94423 1.04177 1.70172 1.45218 1.05131 1.34061 0.84994 0.78873 0.78154 0.76230 1.19434 1.20131 1.18357 1.22342 0.93168 0.97328 1.03021 1.22791 0.97351 0.92468 1.02205 1.21241 0.93195 0.97288 1.01773 1.20828 0.83391 0.94880 0.99906 0.90718 0.92329 0.92135 0.91499 0.92472 0.93111 0.87532 0.86523 0.87403 0.90051 0.90862 0.87224 0.75973 0.87810 0.88199 0.91957 0.92671 0.88087 0.92272 0.89277 0.92708 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.11 -1.59 5.22 30.59 0.16 -1.43 16 3 C -0.13 -1.67 5.01 29.85 0.15 -1.52 16 4 C 0.52 10.30 7.87 87.66 0.69 10.99 16 5 O -0.58 -15.91 15.78 -3.04 -0.05 -15.96 16 6 N -0.60 -10.27 3.21 -793.65 -2.54 -12.81 16 7 C 0.11 1.44 6.68 86.93 0.58 2.02 16 8 C -0.13 -2.27 6.04 31.63 0.19 -2.08 16 9 C 0.14 2.95 0.29 4.87 0.00 2.95 16 10 N -0.69 -17.61 4.84 -417.24 -2.02 -19.63 16 11 C 0.54 19.04 7.34 87.66 0.64 19.68 16 12 O -0.55 -23.14 14.04 -3.02 -0.04 -23.18 16 13 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 14 S -0.14 -7.45 20.57 -56.49 -1.16 -8.61 16 15 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 16 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 17 C 0.02 0.88 5.49 84.86 0.47 1.35 16 18 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 19 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 C -0.12 -2.54 5.92 31.50 0.19 -2.36 16 24 C -0.11 -2.05 6.84 32.64 0.22 -1.82 16 25 C -0.10 -1.88 5.84 30.34 0.18 -1.70 16 26 C 0.12 2.14 2.58 46.07 0.12 2.26 16 27 H 0.08 1.21 7.44 -2.39 -0.02 1.20 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.96 8.10 -2.38 -0.02 0.94 16 32 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.74 7.23 -2.39 -0.02 1.72 16 38 H 0.11 1.47 8.13 -2.38 -0.02 1.45 16 39 H 0.40 9.27 8.62 -92.70 -0.80 8.47 16 40 H 0.10 3.73 8.14 -2.40 -0.02 3.71 16 41 H 0.10 3.69 8.14 -2.40 -0.02 3.67 16 42 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 43 H 0.05 1.57 7.03 -2.39 -0.02 1.55 16 44 H 0.10 1.67 8.12 -2.39 -0.02 1.65 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -76.52 397.96 2.03 -74.49 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.15 Total: 23.10 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.39 Total: -7.87 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -4.28 Total: -87.49 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.09 Total: -39.14 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -76.52 2.03 -74.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718701645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.130 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds