Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.50706 * 109.46816 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00029 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99433 * 180.02562 * 4 3 2 7 7 C 1.47372 * 125.58406 * 359.97438 * 6 4 3 8 8 C 1.56419 * 104.93390 * 204.75670 * 7 6 4 9 9 C 1.54918 * 101.06684 * 322.95835 * 8 7 6 10 10 N 1.46500 * 112.33227 * 273.50186 * 9 8 7 11 11 C 1.34776 * 119.99750 * 297.63853 * 10 9 8 12 12 O 1.21280 * 120.00179 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99720 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47163 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99933 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00353 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99705 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99774 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00133 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00126 * 19 17 15 23 23 C 1.53585 * 109.09329 * 148.38301 * 9 8 7 24 24 C 1.54221 * 106.67315 * 246.34185 * 23 9 8 25 25 C 1.54756 * 104.15985 * 24.94393 * 24 23 9 26 26 C 1.46981 * 125.57340 * 179.97438 * 6 4 3 27 27 H 1.08997 * 112.54195 * 301.37011 * 26 6 4 28 28 H 1.08995 * 109.47982 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47033 * 300.00293 * 1 2 3 30 30 H 1.09005 * 109.47141 * 59.99475 * 1 2 3 31 31 H 1.08999 * 109.46543 * 239.99897 * 2 1 3 32 32 H 1.08998 * 109.46753 * 120.00522 * 2 1 3 33 33 H 1.09005 * 109.46613 * 60.00034 * 3 2 1 34 34 H 1.08995 * 109.47147 * 299.99890 * 3 2 1 35 35 H 1.09000 * 110.36525 * 323.54933 * 7 6 4 36 36 H 1.09000 * 110.36819 * 85.76764 * 7 6 4 37 37 H 1.09004 * 111.55243 * 204.97410 * 8 7 6 38 38 H 1.09003 * 111.05358 * 80.73454 * 8 7 6 39 39 H 0.96997 * 119.99813 * 117.64667 * 10 9 8 40 40 H 1.08995 * 109.47138 * 59.99991 * 13 11 10 41 41 H 1.08998 * 109.47102 * 300.00238 * 13 11 10 42 42 H 0.97001 * 120.00200 * 359.97438 * 18 17 15 43 43 H 1.09002 * 110.01781 * 5.64075 * 23 9 8 44 44 H 1.08991 * 110.01596 * 127.03717 * 23 9 8 45 45 H 1.09005 * 110.49325 * 143.61729 * 24 23 9 46 46 H 1.08998 * 110.49214 * 266.27220 * 24 23 9 47 47 H 1.08999 * 110.66953 * 80.61794 * 25 24 23 48 48 H 1.09002 * 110.67359 * 203.58843 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 8 4.1534 0.3919 0.0006 6 7 4.2210 2.6095 0.0013 7 6 3.6118 3.9514 0.0009 8 6 4.6954 4.8859 -0.6311 9 6 5.9933 4.2717 -0.0497 10 7 6.3266 4.8191 1.2677 11 6 6.5954 6.1328 1.4032 12 8 6.5608 6.8619 0.4347 13 6 6.9388 6.6957 2.7583 14 16 7.2439 8.4739 2.6133 15 6 7.6107 8.8594 4.2930 16 1 7.5978 8.0805 5.0410 17 6 7.9174 10.1639 4.6546 18 7 7.9337 11.1130 3.7428 19 14 8.3056 10.5727 6.4354 20 1 8.5982 12.0235 6.5579 21 1 9.4885 9.7907 6.8764 22 1 7.1392 10.2289 7.2879 23 6 7.1338 4.4567 -1.0616 24 6 7.5263 3.0470 -1.5486 25 6 6.2487 2.2015 -1.3296 26 6 5.6838 2.7523 0.0025 27 1 6.1499 2.2712 0.8623 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6768 1.9563 -0.8899 35 1 2.7070 3.9571 -0.6070 36 1 3.3855 4.2656 1.0198 37 1 4.5727 5.9188 -0.3052 38 1 4.6849 4.8178 -1.7189 39 1 6.3540 4.2359 2.0424 40 1 7.8329 6.2032 3.1404 41 1 6.1088 6.5246 3.4438 42 1 7.7317 10.9008 2.8181 43 1 6.7922 5.0602 -1.9026 44 1 7.9860 4.9357 -0.5798 45 1 7.7931 3.0688 -2.6052 46 1 8.3508 2.6537 -0.9539 47 1 5.5396 2.3582 -2.1424 48 1 6.4980 1.1444 -1.2367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718701646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = -112.081316 kcal Electronic energy + Delta-G solvation = -27828.674398 eV Core-core repulsion = 24007.771705 eV Total energy + Delta-G solvation = -3820.902693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20495 -40.53807 -39.18934 -35.86786 -35.28661 -34.91246 -34.73577 -32.32496 -30.56683 -29.95153 -27.87409 -27.66344 -26.99852 -24.34078 -22.97214 -22.27780 -21.54687 -20.53508 -20.42726 -20.01365 -18.57428 -17.95108 -17.48730 -17.09637 -16.70757 -16.54326 -16.39993 -15.75977 -15.66116 -15.44264 -15.04865 -14.81232 -14.66655 -14.48252 -14.33403 -14.00449 -13.97276 -13.76099 -13.70006 -13.27813 -13.04568 -12.87325 -12.74044 -12.64327 -12.57807 -12.16929 -12.14066 -11.99224 -11.96058 -11.90363 -11.63520 -11.54605 -11.51970 -11.09491 -10.92957 -10.87488 -10.31985 -10.17657 -9.75196 -8.91671 -8.84640 -6.26223 1.18761 1.51994 1.52693 1.58451 1.60213 1.80233 1.82975 2.13542 2.34561 2.96445 3.02555 3.13814 3.35943 3.61568 3.65770 3.80905 3.89846 3.98343 4.06200 4.09484 4.13571 4.17198 4.25110 4.30572 4.38691 4.46891 4.50559 4.53279 4.59089 4.68168 4.72448 4.76876 4.87740 4.91824 4.98175 5.03375 5.04762 5.13342 5.17677 5.22170 5.26624 5.30109 5.45566 5.51884 5.64686 6.16152 6.36546 6.46224 7.06223 7.10118 7.14910 8.51881 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.002385 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.854376 B =11737.713372 C =12673.060995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.131 4.131 4 C 0.524 3.476 5 O -0.578 6.578 6 N -0.612 5.612 7 C 0.102 3.898 8 C -0.132 4.132 9 C 0.165 3.835 10 N -0.701 5.701 11 C 0.542 3.458 12 O -0.545 6.545 13 C -0.112 4.112 14 S -0.185 6.185 15 C -0.615 4.615 16 H 0.073 0.927 17 C -0.019 4.019 18 N -0.913 5.913 19 Si 1.134 2.866 20 H -0.280 1.280 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.116 4.116 26 C 0.139 3.861 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.261 0.739 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -22.708 -8.791 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.171 4.171 4 C 0.315 3.685 5 O -0.458 6.458 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.171 4.171 9 C 0.078 3.922 10 N -0.355 5.355 11 C 0.327 3.673 12 O -0.421 6.421 13 C -0.264 4.264 14 S 0.042 5.958 15 C -0.763 4.763 16 H 0.091 0.909 17 C -0.222 4.222 18 N -0.548 5.548 19 Si 0.952 3.048 20 H -0.206 1.206 21 H -0.190 1.190 22 H -0.188 1.188 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.154 4.154 26 C 0.034 3.966 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.250 0.750 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.811 -20.915 -9.409 25.796 hybrid contribution 0.035 -1.929 0.483 1.989 sum -11.776 -22.844 -8.926 27.206 Atomic orbital electron populations 1.21761 0.93780 1.02393 1.02658 1.21251 0.96633 0.94607 1.02116 1.21776 0.88735 1.00343 1.06215 1.21076 0.91350 0.81392 0.74651 1.90690 1.71481 1.31840 1.51750 1.48614 1.06288 1.06509 1.73128 1.22750 0.97218 0.80034 1.01975 1.23415 0.92839 0.99415 1.01449 1.21589 0.95688 0.91734 0.83175 1.45684 1.71285 1.07771 1.10737 1.19809 0.75797 0.82281 0.89384 1.90697 1.51386 1.59314 1.40738 1.23239 1.05957 0.98742 0.98463 1.84963 1.91492 1.04475 1.14875 1.24038 1.58477 1.00288 0.93471 0.90907 1.27766 0.92619 0.91379 1.10433 1.70922 1.44996 1.35496 1.03367 0.82738 0.77875 0.76449 0.67725 1.20556 1.18976 1.18809 1.22310 0.97081 0.98087 0.98081 1.22321 0.97332 0.93143 1.02442 1.22634 0.97320 0.99755 0.95729 1.22415 0.81558 0.92967 0.99622 0.89323 0.92288 0.91925 0.91685 0.92593 0.92880 0.87195 0.86723 0.87409 0.90646 0.90429 0.88528 0.75034 0.87576 0.87285 0.92787 0.90755 0.93015 0.89746 0.90903 0.90765 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.11 -1.43 5.22 30.59 0.16 -1.27 16 3 C -0.13 -1.51 4.69 29.85 0.14 -1.37 16 4 C 0.52 9.85 7.65 87.66 0.67 10.52 16 5 O -0.58 -15.34 15.98 -3.03 -0.05 -15.39 16 6 N -0.61 -10.32 2.99 -780.25 -2.33 -12.65 16 7 C 0.10 1.44 6.74 87.40 0.59 2.02 16 8 C -0.13 -2.55 5.85 32.44 0.19 -2.36 16 9 C 0.17 3.41 0.73 5.19 0.00 3.42 16 10 N -0.70 -16.26 5.23 -415.77 -2.17 -18.44 16 11 C 0.54 17.96 7.02 87.66 0.61 18.57 16 12 O -0.54 -22.07 13.68 -3.03 -0.04 -22.11 16 13 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 14 S -0.18 -9.79 19.60 -56.49 -1.11 -10.90 16 15 C -0.62 -34.81 9.50 67.95 0.65 -34.16 16 16 H 0.07 3.88 7.80 -2.91 -0.02 3.86 16 17 C -0.02 -1.06 5.49 84.86 0.47 -0.60 16 18 N -0.91 -57.15 13.67 21.65 0.30 -56.86 16 19 Si 1.13 48.69 29.92 68.60 2.05 50.74 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 C -0.12 -2.58 5.27 31.20 0.16 -2.42 16 24 C -0.11 -1.96 6.84 31.61 0.22 -1.74 16 25 C -0.12 -2.05 5.92 31.81 0.19 -1.86 16 26 C 0.14 2.56 3.33 46.26 0.15 2.72 16 27 H 0.09 1.71 7.98 -2.39 -0.02 1.69 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.11 0.84 7.84 -2.39 -0.02 0.83 16 35 H 0.11 0.95 7.45 -2.39 -0.02 0.93 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.96 6.65 -2.39 -0.02 1.94 16 38 H 0.10 1.66 7.63 -2.39 -0.02 1.64 16 39 H 0.41 7.52 8.50 -92.71 -0.79 6.73 16 40 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 42 H 0.26 16.94 7.12 -92.71 -0.66 16.28 16 43 H 0.07 1.70 7.37 -2.39 -0.02 1.69 16 44 H 0.05 1.41 7.49 -2.39 -0.02 1.39 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -76.97 394.25 2.27 -74.70 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.27 Total: 23.80 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.35 Total: -12.91 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -4.21 Total: -87.94 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.09 Total: -37.50 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.05 Total: 50.74 kcal Atomic # 16 Polarization: -9.79 SS G_CDS: -1.11 Total: -10.90 kcal Total: -76.97 2.27 -74.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718701646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.377 kcal (2) G-P(sol) polarization free energy of solvation -76.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds