Wall clock time and date at job start Sat Apr 11 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32988 * 120.00107 * 2 1 4 4 C 1.50707 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.47098 * 120.00275 * 180.02562 * 3 2 1 6 6 O 1.21624 * 119.99676 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00434 * 180.02562 * 5 3 2 8 8 C 1.46504 * 120.00129 * 179.97438 * 7 5 3 9 9 H 1.08998 * 110.05600 * 33.58042 * 8 7 5 10 10 C 1.54267 * 110.02925 * 272.16360 * 8 7 5 11 11 C 1.54891 * 104.19324 * 217.10695 * 10 8 7 12 12 C 1.54888 * 102.75120 * 37.94011 * 11 10 8 13 13 H 1.08999 * 110.48451 * 80.73628 * 12 11 10 14 14 C 1.52994 * 110.48770 * 203.38058 * 12 11 10 15 15 N 1.46506 * 109.47382 * 289.77723 * 14 12 11 16 16 C 1.34773 * 120.00479 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00038 * 179.97438 * 16 15 14 19 19 S 1.81004 * 109.47098 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00239 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99403 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00215 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99726 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99993 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47169 * 59.99867 * 24 22 20 26 26 H 1.48502 * 109.46879 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46731 * 299.99339 * 24 22 20 28 28 C 1.53876 * 110.03266 * 154.99840 * 8 7 5 29 29 H 1.09005 * 109.47194 * 300.00352 * 1 2 3 30 30 H 1.08992 * 109.47313 * 59.99795 * 1 2 3 31 31 H 1.08992 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.99545 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47163 * 269.99975 * 4 3 2 34 34 H 1.09000 * 109.47017 * 30.00197 * 4 3 2 35 35 H 1.08994 * 109.47021 * 150.00142 * 4 3 2 36 36 H 0.97000 * 120.00127 * 359.97438 * 7 5 3 37 37 H 1.09004 * 110.48597 * 335.78333 * 10 8 7 38 38 H 1.08994 * 110.48679 * 98.42860 * 10 8 7 39 39 H 1.09005 * 110.75269 * 279.62515 * 11 10 8 40 40 H 1.08999 * 110.75712 * 156.25949 * 11 10 8 41 41 H 1.09002 * 109.47471 * 49.77470 * 14 12 11 42 42 H 1.08999 * 109.47564 * 169.77621 * 14 12 11 43 43 H 0.96999 * 119.99567 * 359.97438 * 15 14 12 44 44 H 1.08997 * 109.47740 * 299.99613 * 18 16 15 45 45 H 1.09001 * 109.47535 * 60.00230 * 18 16 15 46 46 H 0.96997 * 119.99901 * 180.02562 * 23 22 20 47 47 H 1.08998 * 110.02768 * 238.56979 * 28 8 7 48 48 H 1.08994 * 110.03051 * 359.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3169 2.3189 0.0000 8 6 5.7819 2.3188 0.0000 9 1 6.1557 1.4661 -0.5667 10 6 6.3103 2.2635 1.4483 11 6 7.5655 3.1707 1.4296 12 6 7.1394 4.3245 0.4881 13 1 6.5291 5.0500 1.0259 14 6 8.3694 5.0025 -0.1187 15 7 9.0758 5.7541 0.9217 16 6 10.1968 6.4372 0.6161 17 8 10.6209 6.4293 -0.5201 18 6 10.9230 7.2107 1.6862 19 16 12.3783 8.0127 0.9684 20 6 13.0186 8.8206 2.3974 21 1 12.5108 8.7233 3.3457 22 6 14.1747 9.5829 2.3042 23 7 14.7931 9.7019 1.1483 24 14 14.8538 10.4388 3.8193 25 1 15.1741 9.4267 4.8577 26 1 16.0869 11.1826 3.4567 27 1 13.8407 11.3870 4.3480 28 6 6.3091 3.6293 -0.6105 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.0469 -0.9353 0.0004 33 1 1.2372 2.7713 -1.0284 34 1 0.4659 2.3267 0.5129 35 1 2.0074 3.2166 0.5133 36 1 3.8319 3.1590 0.0003 37 1 5.5660 2.6561 2.1411 38 1 6.5815 1.2425 1.7166 39 1 8.4229 2.6356 1.0212 40 1 7.7844 3.5480 2.4285 41 1 9.0339 4.2450 -0.5343 42 1 8.0556 5.6839 -0.9095 43 1 8.7364 5.7607 1.8303 44 1 10.2583 7.9680 2.1017 45 1 11.2372 6.5296 2.4771 46 1 15.6013 10.2343 1.0832 47 1 6.9386 3.4124 -1.4734 48 1 5.4749 4.2650 -0.9071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718737649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:03 Heat of formation + Delta-G solvation = -109.340849 kcal Electronic energy + Delta-G solvation = -25840.222287 eV Core-core repulsion = 22019.438429 eV Total energy + Delta-G solvation = -3820.783857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23696 -40.60557 -39.15745 -36.47555 -36.02873 -34.57864 -34.42087 -31.69163 -30.37669 -29.98313 -28.66996 -27.65200 -27.00796 -25.25700 -23.08011 -21.83233 -21.45525 -21.04194 -19.78987 -19.51939 -18.01375 -17.76073 -17.61769 -17.21306 -16.86734 -16.66992 -16.19572 -15.89806 -15.80411 -15.38967 -15.07899 -14.63940 -14.59301 -14.43018 -14.35605 -14.29336 -13.81713 -13.39948 -13.36102 -13.26463 -13.15897 -13.04055 -12.85497 -12.80452 -12.66460 -12.51421 -12.16800 -12.14335 -11.81052 -11.77929 -11.71331 -11.58105 -11.11875 -10.96460 -10.89484 -10.26403 -10.21293 -10.06923 -9.86368 -8.65574 -8.33462 -6.11680 0.38987 1.28401 1.44749 1.48215 1.57961 1.64555 2.18953 2.25790 2.28315 2.36313 3.00703 3.33555 3.45012 3.58685 3.73198 3.79631 4.00327 4.03231 4.26396 4.29986 4.33890 4.39671 4.42963 4.46516 4.47007 4.52856 4.54860 4.59994 4.73011 4.75290 4.85042 4.89967 4.91197 4.97245 5.06808 5.08673 5.14948 5.18937 5.24308 5.37492 5.42543 5.49387 5.51856 5.56367 5.67905 6.20605 6.54709 6.56662 7.07760 7.23650 7.28445 8.75547 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037184 B = 0.001454 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.839875 B =19246.716371 C =19395.106525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.205 4.205 4 C -0.114 4.114 5 C 0.544 3.456 6 O -0.596 6.596 7 N -0.706 5.706 8 C 0.140 3.860 9 H 0.068 0.932 10 C -0.127 4.127 11 C -0.118 4.118 12 C -0.087 4.087 13 H 0.107 0.893 14 C 0.127 3.873 15 N -0.710 5.710 16 C 0.532 3.468 17 O -0.569 6.569 18 C -0.130 4.130 19 S -0.154 6.154 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.261 1.261 28 C -0.116 4.116 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.416 0.584 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.145 -15.476 1.956 36.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.096 4.096 3 C -0.208 4.208 4 C -0.171 4.171 5 C 0.334 3.666 6 O -0.478 6.478 7 N -0.358 5.358 8 C 0.035 3.965 9 H 0.086 0.914 10 C -0.165 4.165 11 C -0.156 4.156 12 C -0.106 4.106 13 H 0.125 0.875 14 C 0.004 3.996 15 N -0.364 5.364 16 C 0.318 3.682 17 O -0.447 6.447 18 C -0.281 4.281 19 S 0.073 5.927 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.154 4.154 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.253 0.747 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -31.892 -16.139 -0.043 35.743 hybrid contribution 0.308 0.546 2.056 2.149 sum -31.585 -15.593 2.013 35.281 Atomic orbital electron populations 1.21036 0.89589 1.03976 1.03732 1.23773 0.98073 0.97083 0.90673 1.21559 0.91193 0.98572 1.09471 1.20876 1.00446 0.92217 1.03531 1.18991 0.89071 0.83497 0.75048 1.90769 1.71316 1.33078 1.52657 1.46046 1.06851 1.08770 1.74128 1.21574 0.79399 0.98723 0.96777 0.91373 1.22692 0.97880 0.99803 0.96169 1.22579 0.97051 0.95582 1.00377 1.22133 0.94559 0.97277 0.96650 0.87521 1.21462 0.93093 0.94676 0.90387 1.45718 1.25763 1.50641 1.14244 1.20063 0.80890 0.78822 0.88465 1.90694 1.67232 1.63362 1.23424 1.23377 1.00941 1.02724 1.01055 1.85591 1.26869 1.62545 1.17670 1.23185 1.14207 1.35950 0.96206 0.89860 1.26117 0.95924 0.96509 1.00494 1.70180 1.18758 1.39306 1.26573 0.85012 0.77607 0.78253 0.77183 1.18708 1.20449 1.18569 1.22348 1.00388 0.94681 0.98009 0.89219 0.89443 0.90854 0.87911 0.89910 0.89474 0.90753 0.74609 0.90194 0.92765 0.91934 0.89818 0.92759 0.92015 0.74664 0.87084 0.87278 0.92013 0.90452 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 8.91 71.24 0.63 0.03 16 2 C -0.08 -0.91 9.84 24.52 0.24 -0.66 16 3 C -0.21 -2.49 6.00 -18.70 -0.11 -2.60 16 4 C -0.11 -0.50 9.14 71.24 0.65 0.15 16 5 C 0.54 10.00 7.75 86.57 0.67 10.67 16 6 O -0.60 -16.60 15.88 -4.11 -0.07 -16.67 16 7 N -0.71 -8.79 4.98 -442.69 -2.20 -10.99 16 8 C 0.14 2.02 3.25 45.72 0.15 2.17 16 9 H 0.07 1.36 7.57 -2.39 -0.02 1.35 16 10 C -0.13 -1.79 6.53 31.67 0.21 -1.59 16 11 C -0.12 -1.54 6.19 31.89 0.20 -1.34 16 12 C -0.09 -1.03 2.89 -9.72 -0.03 -1.05 16 13 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 14 C 0.13 2.53 4.96 86.38 0.43 2.96 16 15 N -0.71 -16.46 5.45 -463.07 -2.52 -18.98 16 16 C 0.53 19.12 7.85 87.66 0.69 19.80 16 17 O -0.57 -26.18 15.86 -3.03 -0.05 -26.23 16 18 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 19 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 20 C -0.55 -31.16 9.50 67.95 0.65 -30.51 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 24 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 28 C -0.12 -1.26 6.14 31.32 0.19 -1.07 16 29 H 0.09 0.22 7.40 -2.38 -0.02 0.20 16 30 H 0.09 0.24 8.10 -2.39 -0.02 0.22 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 1.67 7.49 -2.91 -0.02 1.65 16 33 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.09 0.17 6.49 -2.39 -0.02 0.16 16 35 H 0.07 0.17 6.70 -2.39 -0.02 0.15 16 36 H 0.41 2.55 6.42 -92.71 -0.60 1.95 16 37 H 0.08 0.99 8.05 -2.38 -0.02 0.97 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.00 7.97 -2.38 -0.02 0.98 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 1.27 8.02 -2.39 -0.02 1.25 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.42 6.66 8.44 -92.71 -0.78 5.88 16 44 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 45 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.08 0.98 7.84 -2.39 -0.02 0.96 16 48 H 0.10 0.67 7.62 -2.39 -0.02 0.65 16 Total: -1.00 -84.42 406.76 1.37 -83.05 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.41 Total: 16.27 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.47 Total: -6.36 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -4.44 Total: -85.74 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -0.11 Total: -42.90 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -84.42 1.37 -83.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718737649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.290 kcal (2) G-P(sol) polarization free energy of solvation -84.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds