Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47376 * 2 1 4 4 C 1.50705 * 109.47412 * 120.00016 * 2 1 3 5 5 O 1.21274 * 119.99787 * 274.83980 * 4 2 1 6 6 N 1.34775 * 119.99588 * 94.83247 * 4 2 1 7 7 C 1.47462 * 125.79552 * 354.96469 * 6 4 2 8 8 C 1.53809 * 106.63896 * 181.19754 * 7 6 4 9 9 H 1.09003 * 108.91695 * 267.80112 * 8 7 6 10 10 C 1.50047 * 112.43226 * 147.77996 * 8 7 6 11 11 N 1.44249 * 116.54909 * 265.57813 * 10 8 7 12 12 C 1.34773 * 117.48941 * 163.44497 * 11 10 8 13 13 O 1.21283 * 119.99830 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00247 * 179.97438 * 12 11 10 15 15 S 1.80998 * 109.47397 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00194 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99976 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00109 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99622 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47375 * 60.00095 * 20 18 16 22 22 H 1.48503 * 109.47021 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47507 * 299.99786 * 20 18 16 24 24 C 1.45426 * 125.02083 * 343.46409 * 11 10 8 25 25 C 1.52954 * 110.53277 * 32.14592 * 24 11 10 26 26 C 1.53238 * 108.91206 * 306.00603 * 25 24 11 27 27 H 1.09001 * 112.56821 * 296.43564 * 26 25 24 28 28 C 1.47661 * 125.78771 * 174.92764 * 6 4 2 29 29 H 1.08998 * 109.46863 * 184.96719 * 1 2 3 30 30 H 1.09003 * 109.46867 * 304.96074 * 1 2 3 31 31 H 1.08994 * 109.47331 * 64.96324 * 1 2 3 32 32 H 1.09001 * 109.47050 * 240.00162 * 2 1 3 33 33 H 1.08998 * 109.47567 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47099 * 300.00311 * 3 2 1 35 35 H 1.09001 * 109.46899 * 60.00069 * 3 2 1 36 36 H 1.09001 * 110.02383 * 300.48737 * 7 6 4 37 37 H 1.08995 * 110.02670 * 61.89597 * 7 6 4 38 38 H 1.08997 * 108.03466 * 27.35780 * 10 8 7 39 39 H 1.09000 * 108.03806 * 143.79619 * 10 8 7 40 40 H 1.08997 * 109.47389 * 300.00345 * 14 12 11 41 41 H 1.09004 * 109.47203 * 59.99699 * 14 12 11 42 42 H 0.96996 * 120.00211 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.39181 * 152.69616 * 24 11 10 44 44 H 1.09001 * 109.39619 * 272.50556 * 24 11 10 45 45 H 1.08999 * 110.24726 * 185.79248 * 25 24 11 46 46 H 1.09002 * 108.97496 * 65.45169 * 25 24 11 47 47 H 1.09006 * 110.45289 * 35.90759 * 28 6 4 48 48 H 1.08994 * 110.45689 * 273.35287 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1510 -0.1047 2.2744 6 7 2.3497 -2.0189 1.1707 7 6 2.1575 -2.9006 0.0044 8 6 2.6381 -4.2996 0.4259 9 1 3.6893 -4.4075 0.1584 10 6 1.8662 -5.3968 -0.2461 11 7 0.7433 -5.9347 0.4824 12 6 -0.1585 -6.6582 -0.2101 13 8 -0.0086 -6.8353 -1.4005 14 6 -1.3532 -7.2473 0.4947 15 16 -2.3694 -8.1553 -0.6965 16 6 -3.6562 -8.7198 0.3666 17 1 -3.6376 -8.4695 1.4170 18 6 -4.6933 -9.4869 -0.1459 19 7 -4.7157 -9.7924 -1.4260 20 14 -6.0570 -10.0859 0.9813 21 1 -6.7423 -8.9189 1.5928 22 1 -7.0365 -10.8785 0.1954 23 1 -5.4770 -10.9361 2.0518 24 6 0.5095 -5.7558 1.9066 25 6 1.0417 -4.3993 2.3714 26 6 2.5127 -4.2756 1.9604 27 1 3.1469 -5.0163 2.4473 28 6 2.9496 -2.8127 2.2617 29 1 -0.3633 -1.0238 0.0890 30 1 -0.3633 0.5889 0.8423 31 1 -0.3634 0.4349 -0.9310 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.1026 -2.9348 -0.2678 37 1 2.7490 -2.5405 -0.8373 38 1 1.4990 -5.0162 -1.1992 39 1 2.5554 -6.2147 -0.4559 40 1 -1.0150 -7.9269 1.2769 41 1 -1.9439 -6.4465 0.9397 42 1 -5.4402 -10.3288 -1.7840 43 1 -0.5602 -5.8138 2.1077 44 1 1.0249 -6.5412 2.4594 45 1 0.9573 -4.3121 3.4546 46 1 0.4622 -3.6089 1.8944 47 1 2.5592 -2.4897 3.2269 48 1 4.0361 -2.7278 2.2416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719568032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -74.246901 kcal Electronic energy + Delta-G solvation = -27955.179511 eV Core-core repulsion = 24135.917442 eV Total energy + Delta-G solvation = -3819.262069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23984 -39.82448 -38.37177 -35.66292 -34.76513 -32.54857 -32.49404 -32.43913 -29.33196 -28.67298 -27.51675 -26.08571 -25.44797 -24.08672 -23.39480 -21.99765 -20.45879 -19.19485 -18.79422 -17.79386 -17.59482 -16.73171 -16.55931 -15.92914 -15.87831 -15.32149 -14.91415 -14.82243 -14.59225 -14.24535 -13.99304 -13.78827 -13.61325 -13.51663 -13.20346 -13.16363 -12.90741 -12.67851 -12.62874 -12.43689 -12.29498 -12.13819 -11.97677 -11.53437 -11.45637 -11.43307 -11.22492 -11.06866 -11.05413 -10.84711 -10.81703 -10.78039 -9.99241 -9.83700 -9.41637 -9.07855 -8.98494 -8.53564 -8.25579 -6.52914 -6.23593 -3.94564 2.33610 2.59655 2.89127 2.98687 3.21983 3.24168 3.27621 3.55755 3.87142 4.01055 4.18210 4.23672 4.29617 4.50002 4.62001 4.63938 4.68166 4.85546 4.87848 4.98684 5.03560 5.11497 5.13500 5.21708 5.27249 5.28929 5.34244 5.40002 5.42684 5.45171 5.46017 5.51881 5.57209 5.57494 5.62353 5.68140 5.80139 5.83840 5.84955 5.86867 5.93074 6.03024 6.08684 6.74572 7.15321 7.41449 7.57235 7.85950 8.32844 8.49536 9.21640 10.83771 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.002426 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.049114 B =11539.907169 C =11939.730106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.136 4.136 4 C 0.535 3.465 5 O -0.541 6.541 6 N -0.620 5.620 7 C 0.104 3.896 8 C -0.100 4.100 9 H 0.093 0.907 10 C 0.132 3.868 11 N -0.609 5.609 12 C 0.527 3.473 13 O -0.514 6.514 14 C -0.151 4.151 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.110 3.890 25 C -0.125 4.125 26 C -0.094 4.094 27 H 0.105 0.895 28 C 0.107 3.893 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.910 17.015 5.930 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.193 4.193 4 C 0.325 3.675 5 O -0.418 6.418 6 N -0.354 5.354 7 C -0.018 4.018 8 C -0.119 4.119 9 H 0.111 0.889 10 C 0.008 3.992 11 N -0.345 5.345 12 C 0.314 3.686 13 O -0.388 6.388 14 C -0.301 4.301 15 S 0.165 5.835 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.014 4.014 25 C -0.163 4.163 26 C -0.113 4.113 27 H 0.123 0.877 28 C -0.015 4.015 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.115 17.109 4.574 24.628 hybrid contribution -0.973 -0.283 2.064 2.299 sum 16.142 16.826 6.638 24.243 Atomic orbital electron populations 1.21726 0.92236 1.02780 1.03155 1.21284 0.98152 0.97751 0.96074 1.21675 1.01083 0.93726 1.02836 1.20433 0.76618 0.80042 0.90451 1.90691 1.53836 1.65392 1.31867 1.48669 1.62683 1.08799 1.15289 1.22242 1.01871 0.89145 0.88590 1.21513 1.01068 0.93465 0.95871 0.88855 1.19919 0.88470 0.95544 0.95223 1.46967 1.24782 1.53966 1.08825 1.20418 0.83070 0.77845 0.87226 1.90698 1.75435 1.57761 1.14908 1.23582 0.98055 1.03526 1.04947 1.85393 1.23341 1.63984 1.10755 1.22811 1.10010 1.38883 0.96682 0.90994 1.24987 0.97742 0.95293 0.95516 1.70002 1.32340 1.35898 1.12034 0.86232 0.80506 0.78817 0.79994 1.19935 1.20804 1.19923 1.21330 1.02159 0.97020 0.80868 1.21898 0.94973 0.97677 1.01794 1.22381 0.97724 0.96355 0.94889 0.87664 1.22506 0.97739 0.89607 0.91646 0.92149 0.91725 0.91116 0.89296 0.92560 0.91643 0.91351 0.90677 0.90751 0.90410 0.92070 0.89206 0.89235 0.92110 0.89409 0.91907 0.89898 0.91060 0.89951 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.11 -0.90 2.89 -91.77 -0.26 -1.17 16 3 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 4 C 0.54 5.72 6.85 -10.98 -0.08 5.65 16 5 O -0.54 -7.70 16.50 5.56 0.09 -7.61 16 6 N -0.62 -5.53 2.96 -169.84 -0.50 -6.04 16 7 C 0.10 0.79 4.88 -3.09 -0.02 0.77 16 8 C -0.10 -0.73 2.76 -91.16 -0.25 -0.99 16 9 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 10 C 0.13 1.40 5.32 -6.71 -0.04 1.37 16 11 N -0.61 -7.85 3.15 -178.11 -0.56 -8.41 16 12 C 0.53 9.47 7.58 -10.99 -0.08 9.38 16 13 O -0.51 -11.17 15.35 5.56 0.09 -11.09 16 14 C -0.15 -2.94 4.56 36.01 0.16 -2.78 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 17 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 20 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.11 1.11 5.87 -4.64 -0.03 1.08 16 25 C -0.13 -1.03 5.14 -26.63 -0.14 -1.16 16 26 C -0.09 -0.66 3.56 -88.60 -0.32 -0.97 16 27 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 28 C 0.11 0.84 6.28 -2.01 -0.01 0.83 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.59 6.99 -51.93 -0.36 0.23 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.60 7.86 -51.93 -0.41 0.20 16 36 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 37 H 0.07 0.46 7.76 -51.93 -0.40 0.05 16 38 H 0.08 0.93 7.15 -51.93 -0.37 0.56 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.63 8.04 -51.92 -0.42 1.21 16 41 H 0.09 1.62 7.25 -51.91 -0.38 1.24 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.09 0.94 5.99 -51.93 -0.31 0.63 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.69 7.12 -51.93 -0.37 0.32 16 47 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -35.34 390.87 -9.71 -45.05 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.03 Total: -2.76 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.19 Total: -2.18 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.33 Total: -39.59 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.70 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.34 -9.71 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719568032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.195 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds