Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.52996 * 109.47107 * 240.00001 * 3 2 1 5 5 C 1.53004 * 109.47208 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47092 * 119.99886 * 3 2 1 7 7 C 1.50700 * 109.47092 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00372 * 0.02562 * 7 6 3 9 9 N 1.34780 * 120.00041 * 180.02562 * 7 6 3 10 10 C 1.46965 * 120.58942 * 359.71894 * 9 7 6 11 11 C 1.53820 * 108.39443 * 124.76413 * 10 9 7 12 12 N 1.46961 * 108.58116 * 49.63193 * 11 10 9 13 13 C 1.34781 * 120.59209 * 124.62627 * 12 11 10 14 14 O 1.21276 * 119.99871 * 180.02562 * 13 12 11 15 15 C 1.50697 * 119.99930 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47336 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00330 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99948 * 0.02562 * 17 16 15 19 19 C 1.38792 * 119.99856 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00433 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99771 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46898 * 90.00140 * 21 19 17 23 23 H 1.48498 * 109.46932 * 210.00263 * 21 19 17 24 24 H 1.48494 * 109.47115 * 330.00255 * 21 19 17 25 25 C 1.46958 * 118.81306 * 304.64995 * 12 11 10 26 26 C 1.46961 * 120.59299 * 180.02562 * 9 7 6 27 27 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 30 30 H 1.09008 * 109.47160 * 60.00282 * 4 3 2 31 31 H 1.09005 * 109.47173 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47701 * 299.99764 * 4 3 2 33 33 H 1.08998 * 109.46846 * 59.99549 * 5 3 2 34 34 H 1.08996 * 109.47095 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46887 * 300.00372 * 5 3 2 36 36 H 1.08998 * 109.47156 * 299.99994 * 6 3 2 37 37 H 1.09004 * 109.47239 * 60.00118 * 6 3 2 38 38 H 1.09005 * 109.60977 * 244.53793 * 10 9 7 39 39 H 1.08990 * 109.61587 * 5.05315 * 10 9 7 40 40 H 1.09004 * 109.73656 * 289.84239 * 11 10 9 41 41 H 1.09000 * 109.67071 * 169.38672 * 11 10 9 42 42 H 1.08999 * 109.47411 * 299.99685 * 15 13 12 43 43 H 1.09008 * 109.47412 * 59.99905 * 15 13 12 44 44 H 0.97002 * 120.00381 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.61150 * 295.47940 * 25 12 11 46 46 H 1.09003 * 109.61128 * 174.97170 * 25 12 11 47 47 H 1.09000 * 109.61378 * 354.94933 * 26 9 7 48 48 H 1.09004 * 109.60922 * 115.28842 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 1.0693 2.4681 0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5455 3.4788 0.3394 9 7 4.5399 2.9826 2.2595 10 6 4.7288 2.0402 3.3713 11 6 6.2302 1.7289 3.4939 12 7 6.9720 2.9975 3.5067 13 6 7.8141 3.2895 4.5178 14 8 8.4204 4.3398 4.5178 15 6 8.0021 2.3108 5.6482 16 16 9.1862 2.9853 6.8395 17 6 9.2141 1.6758 8.0181 18 1 8.6043 0.7978 7.8643 19 6 10.0206 1.7723 9.1435 20 7 10.7643 2.8421 9.3307 21 14 10.0497 0.3842 10.3935 22 1 11.1066 -0.5917 10.0249 23 1 10.3354 0.9379 11.7414 24 1 8.7302 -0.2969 10.4076 25 6 6.7787 3.9423 2.3978 26 6 5.2813 4.2514 2.2726 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9352 0.0044 30 1 2.3164 1.3285 -2.1393 31 1 3.4878 2.3304 -1.2494 32 1 3.6515 0.5578 -1.2493 33 1 0.4429 2.4100 0.8908 34 1 1.6142 3.4120 0.0002 35 1 0.4422 2.4105 -0.8891 36 1 2.3164 1.3284 2.1392 37 1 3.6515 0.5577 1.2493 38 1 4.3690 2.4896 4.2969 39 1 4.1784 1.1214 3.1697 40 1 6.5516 1.1257 2.6447 41 1 6.4178 1.1859 4.4202 42 1 7.0462 2.1392 6.1430 43 1 8.3814 1.3682 5.2535 44 1 11.3282 2.9093 10.1171 45 1 7.1392 3.4968 1.4706 46 1 7.3263 4.8625 2.6015 47 1 5.0957 4.7933 1.3452 48 1 4.9575 4.8555 3.1202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719979609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -41.105611 kcal Electronic energy + Delta-G solvation = -27487.213668 eV Core-core repulsion = 23669.388713 eV Total energy + Delta-G solvation = -3817.824955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92745 -39.62292 -37.83264 -36.68677 -34.13211 -32.47511 -32.36012 -31.40018 -29.47822 -28.85075 -27.53310 -26.97534 -25.52747 -24.08688 -23.25968 -22.22036 -20.27190 -18.72049 -18.46374 -17.87437 -17.31047 -16.60954 -16.23997 -15.95810 -15.74713 -15.59887 -15.44779 -14.84691 -14.78893 -14.38931 -14.16026 -14.04075 -13.71475 -13.55268 -13.32071 -13.06487 -12.80268 -12.53915 -12.36073 -12.05716 -11.98661 -11.83083 -11.77578 -11.63982 -11.47449 -11.39027 -11.16590 -11.10330 -11.06691 -10.94510 -10.79931 -9.85760 -9.76400 -9.70026 -9.49013 -9.34671 -9.11041 -8.44149 -8.28425 -6.55766 -6.26042 -3.97377 1.91931 2.31627 2.51991 2.92410 2.95489 3.18911 3.22160 3.26757 3.51052 4.08520 4.15433 4.36815 4.45755 4.51667 4.57883 4.63650 4.85172 4.86083 4.91818 4.97400 5.02585 5.08525 5.10120 5.17230 5.26341 5.28519 5.35137 5.45898 5.47789 5.52963 5.53922 5.65760 5.72036 5.72960 5.73975 5.79730 5.83130 6.01638 6.08568 6.14835 6.22607 6.32875 6.45655 6.46304 7.05985 7.41597 7.54722 7.89256 8.30204 8.44140 9.19178 10.81283 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.002173 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.192003 B =12880.510204 C =13977.183346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.020 4.020 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.129 4.129 7 C 0.518 3.482 8 O -0.532 6.532 9 N -0.612 5.612 10 C 0.090 3.910 11 C 0.094 3.906 12 N -0.622 5.622 13 C 0.536 3.464 14 O -0.513 6.513 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.101 3.899 26 C 0.098 3.902 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.322 -5.985 -18.319 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.164 4.164 3 C -0.020 4.020 4 C -0.206 4.206 5 C -0.212 4.212 6 C -0.169 4.169 7 C 0.308 3.692 8 O -0.410 6.410 9 N -0.346 5.346 10 C -0.034 4.034 11 C -0.030 4.030 12 N -0.359 5.359 13 C 0.324 3.676 14 O -0.387 6.387 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.023 4.023 26 C -0.025 4.025 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.351 -3.891 -18.673 26.469 hybrid contribution -0.703 -2.427 0.969 2.706 sum -19.055 -6.318 -17.705 26.767 Atomic orbital electron populations 1.24031 0.96190 1.02110 1.00888 1.22943 0.95942 0.97559 0.99978 1.19382 0.94916 0.93344 0.94381 1.22050 0.99218 1.03520 0.95816 1.22177 0.98534 0.99583 1.00931 1.21758 0.99216 0.95672 1.00245 1.20673 0.78942 0.88599 0.81016 1.90571 1.64454 1.50787 1.35163 1.48137 1.43801 1.19908 1.22776 1.22321 0.96871 0.93889 0.90319 1.22170 0.90429 0.86321 1.04115 1.48053 1.45098 1.19438 1.23280 1.20389 0.77820 0.87450 0.81965 1.90701 1.45766 1.25341 1.76844 1.23556 1.06149 1.01358 0.99121 1.85453 1.51534 1.27242 1.19099 1.22840 1.31217 1.05475 1.08874 0.90924 1.24996 0.94577 0.96580 0.97431 1.70013 1.25143 1.26974 1.28055 0.86167 0.78572 0.80971 0.79782 1.20258 1.20739 1.19688 1.21907 0.95392 0.95500 0.89482 1.22043 0.90920 0.85497 1.04067 0.87826 0.88694 0.87452 0.92973 0.89511 0.93362 0.93234 0.89582 0.92777 0.88757 0.88685 0.90219 0.88464 0.90909 0.87883 0.89209 0.89209 0.92135 0.91372 0.87646 0.87864 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 13.70 29.01 0.40 -0.84 16 2 C -0.15 -0.96 8.76 -36.03 -0.32 -1.28 16 3 C -0.02 -0.15 0.74 -155.66 -0.11 -0.26 16 4 C -0.15 -1.24 8.16 37.16 0.30 -0.94 16 5 C -0.16 -1.28 6.83 37.16 0.25 -1.03 16 6 C -0.13 -0.87 3.09 -27.88 -0.09 -0.96 16 7 C 0.52 4.85 7.11 -10.98 -0.08 4.77 16 8 O -0.53 -6.36 10.75 5.56 0.06 -6.30 16 9 N -0.61 -5.55 2.94 -172.19 -0.51 -6.06 16 10 C 0.09 0.66 6.54 -3.36 -0.02 0.64 16 11 C 0.09 0.86 6.52 -3.36 -0.02 0.84 16 12 N -0.62 -8.09 2.95 -172.19 -0.51 -8.60 16 13 C 0.54 9.58 7.72 -10.99 -0.08 9.50 16 14 O -0.51 -11.25 15.27 5.56 0.08 -11.17 16 15 C -0.15 -2.88 4.50 36.00 0.16 -2.72 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 18 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 21 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.10 1.17 6.59 -3.58 -0.02 1.14 16 26 C 0.10 0.99 6.59 -3.58 -0.02 0.97 16 27 H 0.10 0.65 5.69 -52.49 -0.30 0.35 16 28 H 0.09 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.09 0.90 5.51 -51.93 -0.29 0.61 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.37 7.50 -51.93 -0.39 -0.01 16 34 H 0.09 0.89 5.51 -51.93 -0.29 0.60 16 35 H 0.05 0.42 7.49 -51.93 -0.39 0.03 16 36 H 0.09 0.54 7.90 -51.93 -0.41 0.13 16 37 H 0.09 0.50 7.73 -51.93 -0.40 0.10 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.45 5.91 -51.93 -0.31 0.14 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.91 5.91 -51.93 -0.31 0.60 16 42 H 0.09 1.54 7.72 -51.92 -0.40 1.14 16 43 H 0.09 1.57 7.91 -51.91 -0.41 1.16 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.11 1.38 6.99 -51.93 -0.36 1.02 16 47 H 0.10 1.06 6.99 -51.93 -0.36 0.69 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -34.28 388.28 -8.52 -42.79 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.54 Total: -0.94 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.54 Total: -2.70 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.28 Total: -39.59 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.14 Total: -17.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.28 -8.52 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719979609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds