Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.52996 * 109.47107 * 240.00001 * 3 2 1 5 5 C 1.53004 * 109.47208 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47092 * 119.99886 * 3 2 1 7 7 C 1.50700 * 109.47092 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00372 * 0.02562 * 7 6 3 9 9 N 1.34780 * 120.00041 * 180.02562 * 7 6 3 10 10 C 1.46965 * 120.58942 * 359.71894 * 9 7 6 11 11 C 1.53820 * 108.39443 * 124.76413 * 10 9 7 12 12 N 1.46961 * 108.58116 * 49.63193 * 11 10 9 13 13 C 1.34781 * 120.59209 * 124.62627 * 12 11 10 14 14 O 1.21276 * 119.99871 * 180.02562 * 13 12 11 15 15 C 1.50697 * 119.99930 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47336 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00330 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99948 * 0.02562 * 17 16 15 19 19 C 1.38792 * 119.99856 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00433 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99771 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46898 * 90.00140 * 21 19 17 23 23 H 1.48498 * 109.46932 * 210.00263 * 21 19 17 24 24 H 1.48494 * 109.47115 * 330.00255 * 21 19 17 25 25 C 1.46958 * 118.81306 * 304.64995 * 12 11 10 26 26 C 1.46961 * 120.59299 * 180.02562 * 9 7 6 27 27 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 30 30 H 1.09008 * 109.47160 * 60.00282 * 4 3 2 31 31 H 1.09005 * 109.47173 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47701 * 299.99764 * 4 3 2 33 33 H 1.08998 * 109.46846 * 59.99549 * 5 3 2 34 34 H 1.08996 * 109.47095 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46887 * 300.00372 * 5 3 2 36 36 H 1.08998 * 109.47156 * 299.99994 * 6 3 2 37 37 H 1.09004 * 109.47239 * 60.00118 * 6 3 2 38 38 H 1.09005 * 109.60977 * 244.53793 * 10 9 7 39 39 H 1.08990 * 109.61587 * 5.05315 * 10 9 7 40 40 H 1.09004 * 109.73656 * 289.84239 * 11 10 9 41 41 H 1.09000 * 109.67071 * 169.38672 * 11 10 9 42 42 H 1.08999 * 109.47411 * 299.99685 * 15 13 12 43 43 H 1.09008 * 109.47412 * 59.99905 * 15 13 12 44 44 H 0.97002 * 120.00381 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.61150 * 295.47940 * 25 12 11 46 46 H 1.09003 * 109.61128 * 174.97170 * 25 12 11 47 47 H 1.09000 * 109.61378 * 354.94933 * 26 9 7 48 48 H 1.09004 * 109.60922 * 115.28842 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 1.0693 2.4681 0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5455 3.4788 0.3394 9 7 4.5399 2.9826 2.2595 10 6 4.7288 2.0402 3.3713 11 6 6.2302 1.7289 3.4939 12 7 6.9720 2.9975 3.5067 13 6 7.8141 3.2895 4.5178 14 8 8.4204 4.3398 4.5178 15 6 8.0021 2.3108 5.6482 16 16 9.1862 2.9853 6.8395 17 6 9.2141 1.6758 8.0181 18 1 8.6043 0.7978 7.8643 19 6 10.0206 1.7723 9.1435 20 7 10.7643 2.8421 9.3307 21 14 10.0497 0.3842 10.3935 22 1 11.1066 -0.5917 10.0249 23 1 10.3354 0.9379 11.7414 24 1 8.7302 -0.2969 10.4076 25 6 6.7787 3.9423 2.3978 26 6 5.2813 4.2514 2.2726 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9352 0.0044 30 1 2.3164 1.3285 -2.1393 31 1 3.4878 2.3304 -1.2494 32 1 3.6515 0.5578 -1.2493 33 1 0.4429 2.4100 0.8908 34 1 1.6142 3.4120 0.0002 35 1 0.4422 2.4105 -0.8891 36 1 2.3164 1.3284 2.1392 37 1 3.6515 0.5577 1.2493 38 1 4.3690 2.4896 4.2969 39 1 4.1784 1.1214 3.1697 40 1 6.5516 1.1257 2.6447 41 1 6.4178 1.1859 4.4202 42 1 7.0462 2.1392 6.1430 43 1 8.3814 1.3682 5.2535 44 1 11.3282 2.9093 10.1171 45 1 7.1392 3.4968 1.4706 46 1 7.3263 4.8625 2.6015 47 1 5.0957 4.7933 1.3452 48 1 4.9575 4.8555 3.1202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719979609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = -62.217906 kcal Electronic energy + Delta-G solvation = -27488.129166 eV Core-core repulsion = 23669.388713 eV Total energy + Delta-G solvation = -3818.740453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72865 -40.73056 -38.67303 -37.53666 -35.14937 -34.56252 -33.18907 -31.99418 -30.76596 -29.59855 -28.16725 -27.93990 -27.53950 -24.89460 -24.03450 -22.97112 -21.23405 -20.00824 -19.26161 -19.01170 -18.41137 -17.62269 -17.20415 -16.86029 -16.80767 -16.73353 -16.58338 -16.18275 -15.79403 -15.42589 -15.04290 -14.94648 -14.74757 -14.65992 -14.47001 -14.19695 -13.68217 -13.51859 -13.40863 -13.15181 -12.97022 -12.87696 -12.71161 -12.63655 -12.61014 -12.49631 -12.40428 -12.23335 -11.96137 -11.73443 -11.69513 -11.49093 -11.12457 -10.92052 -10.46833 -10.30531 -10.22608 -10.19609 -9.38387 -8.65479 -8.32628 -6.10857 1.25033 1.43510 1.44438 1.47675 1.51930 1.57022 1.66903 1.85398 2.19253 2.29087 3.01902 3.25038 3.45995 3.62734 3.76509 3.84273 3.93884 4.00945 4.11351 4.12468 4.21298 4.23882 4.34912 4.40880 4.46582 4.50317 4.52952 4.63204 4.65460 4.69153 4.76096 4.78405 4.86769 4.95075 5.00581 5.09587 5.14216 5.22534 5.37405 5.43610 5.44216 5.49024 5.59981 5.82179 5.99280 6.19283 6.22253 6.40903 7.08829 7.10380 7.19730 8.76406 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.002173 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.192003 B =12880.510204 C =13977.183346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.020 4.020 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.125 4.125 7 C 0.515 3.485 8 O -0.562 6.562 9 N -0.613 5.613 10 C 0.092 3.908 11 C 0.085 3.915 12 N -0.609 5.609 13 C 0.534 3.466 14 O -0.566 6.566 15 C -0.123 4.123 16 S -0.157 6.157 17 C -0.541 4.541 18 H 0.087 0.913 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.255 1.255 25 C 0.104 3.896 26 C 0.107 3.893 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.428 -9.600 -18.438 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.166 4.166 3 C -0.021 4.021 4 C -0.203 4.203 5 C -0.209 4.209 6 C -0.164 4.164 7 C 0.306 3.694 8 O -0.442 6.442 9 N -0.347 5.347 10 C -0.030 4.030 11 C -0.038 4.038 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.444 6.444 15 C -0.273 4.273 16 S 0.070 5.930 17 C -0.689 4.689 18 H 0.105 0.895 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.020 4.020 26 C -0.017 4.017 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.118 0.882 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.509 -7.549 -18.826 28.845 hybrid contribution -0.157 -1.276 0.828 1.529 sum -20.666 -8.825 -17.999 28.791 Atomic orbital electron populations 1.24149 0.96319 1.02524 1.00455 1.22947 0.95960 0.97350 1.00329 1.19367 0.94751 0.93557 0.94381 1.21989 0.99339 1.02636 0.96345 1.22117 0.98592 0.98975 1.01199 1.21817 0.99500 0.94596 1.00512 1.21209 0.78652 0.89223 0.80318 1.90584 1.65295 1.51961 1.36340 1.48209 1.43545 1.19582 1.23332 1.22472 0.95791 0.95056 0.89727 1.22558 0.91169 0.84488 1.05564 1.48034 1.43601 1.20875 1.21827 1.20222 0.78350 0.86507 0.82689 1.90687 1.48291 1.27296 1.78124 1.23367 1.04703 1.01695 0.97585 1.85692 1.55233 1.29744 1.22342 1.23190 1.31251 1.05544 1.08936 0.89533 1.26139 0.93988 0.99377 0.99812 1.70191 1.26298 1.29515 1.28916 0.84955 0.79393 0.77259 0.76395 1.19429 1.20654 1.17833 1.21936 0.96298 0.94558 0.89174 1.21817 0.89887 0.86378 1.03629 0.88261 0.87566 0.86022 0.93326 0.91783 0.92317 0.92574 0.91932 0.92927 0.86916 0.86201 0.90296 0.84625 0.88763 0.87024 0.86804 0.87063 0.92106 0.90131 0.89759 0.88176 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 13.70 67.78 0.93 -1.04 16 2 C -0.15 -1.48 8.76 25.64 0.22 -1.25 16 3 C -0.02 -0.25 0.74 -52.93 -0.04 -0.29 16 4 C -0.15 -2.21 8.16 71.98 0.59 -1.62 16 5 C -0.15 -2.33 6.83 71.98 0.49 -1.84 16 6 C -0.12 -1.23 3.09 29.85 0.09 -1.14 16 7 C 0.52 8.51 7.11 87.66 0.62 9.13 16 8 O -0.56 -13.10 10.75 -3.02 -0.03 -13.13 16 9 N -0.61 -9.61 2.94 -817.07 -2.40 -12.02 16 10 C 0.09 1.00 6.54 86.57 0.57 1.56 16 11 C 0.08 1.23 6.52 86.57 0.56 1.80 16 12 N -0.61 -14.88 2.95 -817.08 -2.41 -17.28 16 13 C 0.53 18.94 7.72 87.66 0.68 19.61 16 14 O -0.57 -25.73 15.27 -3.02 -0.05 -25.77 16 15 C -0.12 -4.51 4.50 71.23 0.32 -4.19 16 16 S -0.16 -8.48 20.57 -56.49 -1.16 -9.64 16 17 C -0.54 -29.75 9.50 67.95 0.65 -29.10 16 18 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.63 5.49 84.86 0.47 1.10 16 20 N -0.91 -55.25 13.22 21.65 0.29 -54.97 16 21 Si 1.00 42.26 29.55 68.60 2.03 44.28 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 25 C 0.10 2.35 6.59 86.43 0.57 2.92 16 26 C 0.11 2.09 6.59 86.43 0.57 2.66 16 27 H 0.10 1.06 5.69 -2.91 -0.02 1.04 16 28 H 0.11 0.82 8.06 -2.91 -0.02 0.79 16 29 H 0.12 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 1.29 5.51 -2.38 -0.01 1.28 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 7.50 -2.39 -0.02 0.74 16 34 H 0.06 1.29 5.51 -2.39 -0.01 1.27 16 35 H 0.05 0.79 7.49 -2.39 -0.02 0.77 16 36 H 0.11 0.76 7.90 -2.39 -0.02 0.74 16 37 H 0.12 0.64 7.73 -2.38 -0.02 0.62 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.14 0.48 5.91 -2.39 -0.01 0.46 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 1.49 5.91 -2.39 -0.01 1.47 16 42 H 0.11 3.64 7.72 -2.40 -0.02 3.62 16 43 H 0.11 3.62 7.91 -2.39 -0.02 3.61 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.08 2.31 6.99 -2.39 -0.02 2.29 16 47 H 0.10 2.05 6.99 -2.39 -0.02 2.04 16 48 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -78.49 388.28 4.50 -74.00 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.95 Total: 16.25 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 7.29 Total: -1.71 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -4.52 Total: -84.27 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.08 Total: -38.90 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -78.49 4.50 -74.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719979609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.778 kcal (2) G-P(sol) polarization free energy of solvation -78.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds