Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.53001 * 109.46569 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46916 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47229 * 179.97438 * 9 8 7 11 11 C 1.46501 * 120.00090 * 89.99986 * 10 9 8 12 12 C 1.34781 * 120.00204 * 269.99714 * 10 9 8 13 13 O 1.21284 * 119.99679 * 0.02562 * 12 10 9 14 14 C 1.50694 * 119.99810 * 179.97438 * 12 10 9 15 15 S 1.81010 * 109.46976 * 180.02562 * 14 12 10 16 16 C 1.76199 * 100.00047 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99705 * 359.97438 * 16 15 14 18 18 C 1.38791 * 119.99820 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99869 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00433 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47398 * 89.99710 * 20 18 16 22 22 H 1.48494 * 109.47178 * 210.00172 * 20 18 16 23 23 H 1.48501 * 109.46730 * 330.00080 * 20 18 16 24 24 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 25 25 C 1.53004 * 117.49810 * 8.74040 * 24 2 1 26 26 C 1.53002 * 117.49909 * 300.08674 * 24 2 1 27 27 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 28 28 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 29 29 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 30 30 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 31 31 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 32 32 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 33 33 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 34 34 H 1.09001 * 109.47156 * 299.99362 * 8 7 6 35 35 H 1.08992 * 109.47800 * 59.99759 * 8 7 6 36 36 H 1.09000 * 109.47240 * 299.99509 * 9 8 7 37 37 H 1.09008 * 109.47265 * 59.99604 * 9 8 7 38 38 H 1.09005 * 109.47257 * 89.99868 * 11 10 9 39 39 H 1.08994 * 109.47403 * 209.99897 * 11 10 9 40 40 H 1.08999 * 109.46738 * 330.00043 * 11 10 9 41 41 H 1.08997 * 109.47496 * 300.00034 * 14 12 10 42 42 H 1.09000 * 109.47559 * 60.00843 * 14 12 10 43 43 H 0.97001 * 119.99624 * 179.97438 * 19 18 16 44 44 H 1.09000 * 115.55245 * 154.41153 * 24 2 1 45 45 H 1.08997 * 117.49936 * 0.02562 * 25 24 2 46 46 H 1.09006 * 117.49930 * 145.02050 * 25 24 2 47 47 H 1.09004 * 117.49766 * 214.98081 * 26 24 2 48 48 H 1.09000 * 117.49661 * 359.96947 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3400 6.0257 0.0252 9 6 1.5822 7.3459 -0.1282 10 7 2.5087 8.4654 0.0576 11 6 3.2224 9.0243 -1.0933 12 6 2.7047 8.9811 1.2873 13 8 2.1142 8.5181 2.2402 14 6 3.6582 10.1322 1.4784 15 16 3.7036 10.5940 3.2281 16 6 4.8599 11.9220 3.1641 17 1 5.2990 12.2106 2.2206 18 6 5.2072 12.5962 4.3265 19 7 6.0715 13.5880 4.2788 20 14 4.4482 12.0965 5.9586 21 1 5.2955 11.0605 6.6020 22 1 4.3576 13.2833 6.8464 23 1 3.0881 11.5483 5.7247 24 6 2.2605 -1.3050 -0.0006 25 6 1.4521 -2.5874 -0.2074 26 6 2.0246 -2.2575 1.1733 27 1 -0.3634 0.0979 -1.0229 28 1 -0.3634 -0.9349 0.4268 29 1 -0.3633 0.8370 0.5964 30 1 3.2460 1.1552 0.1122 31 1 3.0490 3.5986 0.1691 32 1 0.9327 4.9102 -1.1643 33 1 0.5822 4.9109 0.5808 34 1 2.7798 5.9724 1.0211 35 1 3.1298 5.9715 -0.7240 36 1 1.1428 7.3991 -1.1243 37 1 0.7921 7.4005 0.6209 38 1 2.6296 9.8259 -1.5341 39 1 4.1839 9.4207 -0.7671 40 1 3.3845 8.2423 -1.8350 41 1 4.6560 9.8350 1.1555 42 1 3.3232 10.9838 0.8862 43 1 6.3139 14.0594 5.0912 44 1 3.2637 -1.2685 -0.4253 45 1 0.3753 -2.4872 -0.3434 46 1 1.9236 -3.3948 -0.7679 47 1 2.8725 -2.8478 1.5207 48 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720450903.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -36.645842 kcal Electronic energy + Delta-G solvation = -25629.667491 eV Core-core repulsion = 21812.035926 eV Total energy + Delta-G solvation = -3817.631565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20039 -39.61513 -38.38110 -36.32674 -35.11076 -33.51079 -32.45545 -32.25659 -29.47380 -28.17067 -27.02678 -25.72311 -25.40852 -23.97714 -22.87708 -22.06806 -20.89172 -19.29603 -18.91793 -17.71090 -17.24601 -16.90400 -16.70137 -16.13625 -15.80248 -15.59349 -15.28615 -15.05937 -14.95139 -14.55498 -13.93858 -13.73140 -13.50564 -13.36848 -13.29876 -13.11851 -12.80763 -12.64594 -12.52424 -12.39015 -12.24505 -12.00778 -11.93078 -11.84682 -11.74937 -11.39029 -11.27646 -11.04240 -11.02220 -10.95659 -10.60599 -9.88210 -9.86424 -9.51872 -9.48289 -9.10816 -9.01892 -8.67853 -8.50971 -6.93925 -6.30505 -4.02453 0.96401 2.65443 2.85433 2.96414 2.99294 3.21696 3.31953 3.41645 3.49539 3.58108 4.06649 4.31632 4.32400 4.39094 4.52553 4.54543 4.63458 4.73461 4.74158 4.86131 4.95895 5.03589 5.08636 5.09725 5.10330 5.24040 5.28462 5.32660 5.34734 5.41697 5.44960 5.55779 5.57150 5.59072 5.62502 5.72250 5.75473 5.87133 5.93656 5.98483 6.11158 6.14633 6.23435 6.52099 7.27459 7.38655 7.92501 8.00686 8.39370 8.40025 9.15783 10.78668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.001628 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.743526 B =17193.877639 C =18124.256452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.003 3.997 3 C -0.231 4.231 4 C 0.545 3.455 5 O -0.542 6.542 6 N -0.727 5.727 7 C 0.124 3.876 8 C -0.148 4.148 9 C 0.122 3.878 10 N -0.624 5.624 11 C 0.078 3.922 12 C 0.531 3.469 13 O -0.516 6.516 14 C -0.121 4.121 15 S -0.144 6.144 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.136 4.136 25 C -0.172 4.172 26 C -0.166 4.166 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.401 0.599 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.958 -28.056 -14.307 32.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 C -0.252 4.252 4 C 0.335 3.665 5 O -0.422 6.422 6 N -0.378 5.378 7 C 0.000 4.000 8 C -0.187 4.187 9 C -0.002 4.002 10 N -0.359 5.359 11 C -0.065 4.065 12 C 0.318 3.682 13 O -0.390 6.390 14 C -0.272 4.272 15 S 0.083 5.917 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.154 4.154 25 C -0.208 4.208 26 C -0.203 4.203 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.586 -28.549 -12.976 32.513 hybrid contribution 1.402 0.678 -0.388 1.605 sum -7.184 -27.871 -13.364 31.733 Atomic orbital electron populations 1.21191 0.90739 1.02551 1.03765 1.21796 0.96184 0.92352 0.89571 1.22255 1.00355 0.91756 1.10830 1.18503 0.86897 0.84191 0.76884 1.90763 1.15038 1.87669 1.48710 1.45900 1.13017 1.05727 1.73166 1.21241 0.94917 0.81746 1.02124 1.22177 0.98942 0.94018 1.03602 1.21237 0.92231 0.84171 1.02543 1.47830 1.45587 1.34625 1.07902 1.21810 0.97395 0.98947 0.88341 1.20343 0.82268 0.83551 0.81996 1.90697 1.48098 1.60918 1.39328 1.23317 1.00902 0.98519 1.04450 1.84800 1.59703 1.44136 1.03107 1.22303 1.27856 1.17733 0.98985 0.89406 1.24706 0.93923 0.93708 0.98914 1.69940 1.31586 1.20783 1.29356 0.86738 0.82476 0.79097 0.83571 1.19220 1.19920 1.15923 1.21304 1.00239 0.88768 1.05111 1.23088 1.00513 0.97542 0.99692 1.23010 1.03780 1.01793 0.91688 0.90125 0.92568 0.88992 0.85566 0.76441 0.91386 0.91098 0.90430 0.91190 0.90425 0.89447 0.92465 0.90516 0.91283 0.88547 0.88482 0.91937 0.86551 0.87941 0.88202 0.88103 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 7.90 36.01 0.28 -0.78 16 2 C 0.00 0.02 5.81 -101.17 -0.59 -0.57 16 3 C -0.23 -1.89 9.67 -37.81 -0.37 -2.25 16 4 C 0.55 5.71 7.61 -12.66 -0.10 5.62 16 5 O -0.54 -7.27 13.28 5.27 0.07 -7.20 16 6 N -0.73 -6.39 5.55 -61.49 -0.34 -6.73 16 7 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16 8 C -0.15 -1.36 5.65 -26.73 -0.15 -1.52 16 9 C 0.12 1.28 5.41 -4.04 -0.02 1.26 16 10 N -0.62 -7.91 2.87 -181.57 -0.52 -8.43 16 11 C 0.08 0.72 10.24 59.85 0.61 1.34 16 12 C 0.53 9.34 7.69 -10.99 -0.08 9.25 16 13 O -0.52 -10.94 15.44 5.55 0.09 -10.85 16 14 C -0.12 -2.32 4.71 36.00 0.17 -2.15 16 15 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 16 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 17 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 20 Si 0.86 21.71 27.74 -169.99 -4.72 16.99 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 24 C -0.14 -0.80 6.01 -91.77 -0.55 -1.35 16 25 C -0.17 -0.82 9.77 -26.70 -0.26 -1.09 16 26 C -0.17 -0.83 10.10 -26.70 -0.27 -1.10 16 27 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 28 H 0.06 0.37 6.31 -51.93 -0.33 0.04 16 29 H 0.09 0.97 6.12 -51.93 -0.32 0.66 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.40 2.65 8.46 -40.82 -0.35 2.30 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.09 1.08 7.42 -51.92 -0.39 0.70 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 40 H 0.07 0.46 8.07 -51.93 -0.42 0.05 16 41 H 0.10 1.71 7.40 -51.92 -0.38 1.32 16 42 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.49 6.42 -51.93 -0.33 0.16 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 408.68 15.07 6.16 6.16 Total: -1.00 -35.53 408.68 -9.52 -45.05 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.91 Total: 0.36 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.13 Total: -4.11 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.09 Total: -40.78 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.16 Total: -18.05 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 16.99 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.53 -9.52 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720450903.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.408 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds