Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.53001 * 109.46569 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46916 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47229 * 179.97438 * 9 8 7 11 11 C 1.46501 * 120.00090 * 89.99986 * 10 9 8 12 12 C 1.34781 * 120.00204 * 269.99714 * 10 9 8 13 13 O 1.21284 * 119.99679 * 0.02562 * 12 10 9 14 14 C 1.50694 * 119.99810 * 179.97438 * 12 10 9 15 15 S 1.81010 * 109.46976 * 180.02562 * 14 12 10 16 16 C 1.76199 * 100.00047 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99705 * 359.97438 * 16 15 14 18 18 C 1.38791 * 119.99820 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99869 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00433 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47398 * 89.99710 * 20 18 16 22 22 H 1.48494 * 109.47178 * 210.00172 * 20 18 16 23 23 H 1.48501 * 109.46730 * 330.00080 * 20 18 16 24 24 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 25 25 C 1.53004 * 117.49810 * 8.74040 * 24 2 1 26 26 C 1.53002 * 117.49909 * 300.08674 * 24 2 1 27 27 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 28 28 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 29 29 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 30 30 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 31 31 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 32 32 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 33 33 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 34 34 H 1.09001 * 109.47156 * 299.99362 * 8 7 6 35 35 H 1.08992 * 109.47800 * 59.99759 * 8 7 6 36 36 H 1.09000 * 109.47240 * 299.99509 * 9 8 7 37 37 H 1.09008 * 109.47265 * 59.99604 * 9 8 7 38 38 H 1.09005 * 109.47257 * 89.99868 * 11 10 9 39 39 H 1.08994 * 109.47403 * 209.99897 * 11 10 9 40 40 H 1.08999 * 109.46738 * 330.00043 * 11 10 9 41 41 H 1.08997 * 109.47496 * 300.00034 * 14 12 10 42 42 H 1.09000 * 109.47559 * 60.00843 * 14 12 10 43 43 H 0.97001 * 119.99624 * 179.97438 * 19 18 16 44 44 H 1.09000 * 115.55245 * 154.41153 * 24 2 1 45 45 H 1.08997 * 117.49936 * 0.02562 * 25 24 2 46 46 H 1.09006 * 117.49930 * 145.02050 * 25 24 2 47 47 H 1.09004 * 117.49766 * 214.98081 * 26 24 2 48 48 H 1.09000 * 117.49661 * 359.96947 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3400 6.0257 0.0252 9 6 1.5822 7.3459 -0.1282 10 7 2.5087 8.4654 0.0576 11 6 3.2224 9.0243 -1.0933 12 6 2.7047 8.9811 1.2873 13 8 2.1142 8.5181 2.2402 14 6 3.6582 10.1322 1.4784 15 16 3.7036 10.5940 3.2281 16 6 4.8599 11.9220 3.1641 17 1 5.2990 12.2106 2.2206 18 6 5.2072 12.5962 4.3265 19 7 6.0715 13.5880 4.2788 20 14 4.4482 12.0965 5.9586 21 1 5.2955 11.0605 6.6020 22 1 4.3576 13.2833 6.8464 23 1 3.0881 11.5483 5.7247 24 6 2.2605 -1.3050 -0.0006 25 6 1.4521 -2.5874 -0.2074 26 6 2.0246 -2.2575 1.1733 27 1 -0.3634 0.0979 -1.0229 28 1 -0.3634 -0.9349 0.4268 29 1 -0.3633 0.8370 0.5964 30 1 3.2460 1.1552 0.1122 31 1 3.0490 3.5986 0.1691 32 1 0.9327 4.9102 -1.1643 33 1 0.5822 4.9109 0.5808 34 1 2.7798 5.9724 1.0211 35 1 3.1298 5.9715 -0.7240 36 1 1.1428 7.3991 -1.1243 37 1 0.7921 7.4005 0.6209 38 1 2.6296 9.8259 -1.5341 39 1 4.1839 9.4207 -0.7671 40 1 3.3845 8.2423 -1.8350 41 1 4.6560 9.8350 1.1555 42 1 3.3232 10.9838 0.8862 43 1 6.3139 14.0594 5.0912 44 1 3.2637 -1.2685 -0.4253 45 1 0.3753 -2.4872 -0.3434 46 1 1.9236 -3.3948 -0.7679 47 1 2.8725 -2.8478 1.5207 48 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720450903.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -59.504752 kcal Electronic energy + Delta-G solvation = -25630.658728 eV Core-core repulsion = 21812.035926 eV Total energy + Delta-G solvation = -3818.622802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04182 -40.79417 -38.88403 -37.33346 -36.08750 -34.67527 -34.12685 -33.18461 -30.78613 -28.93667 -27.88025 -27.83706 -26.35517 -24.66589 -23.23167 -22.88513 -21.63216 -20.63112 -19.55830 -19.51048 -18.15209 -17.95517 -17.50647 -17.15571 -16.94849 -16.76487 -16.65636 -16.19060 -15.77361 -15.50529 -15.36060 -14.92648 -14.60432 -14.53235 -14.35170 -14.04235 -13.90364 -13.61346 -13.39056 -13.36306 -13.25863 -13.05856 -12.95964 -12.86546 -12.71503 -12.58330 -12.48508 -12.24053 -11.89725 -11.85990 -11.81051 -11.35119 -11.17566 -10.95106 -10.66796 -10.52566 -10.21751 -9.74533 -9.73658 -9.00797 -8.51997 -6.22913 0.31780 0.97936 1.30486 1.45842 1.51680 1.54118 2.03208 2.23488 2.24465 2.33263 2.68805 2.86387 2.99819 3.55701 3.58318 3.85945 3.91804 3.95042 3.96182 4.08876 4.10921 4.17222 4.18196 4.29768 4.34938 4.43162 4.45488 4.57536 4.65157 4.67242 4.73928 4.79853 4.81461 4.96036 4.98213 5.05201 5.08008 5.13216 5.13430 5.24016 5.44442 5.51998 5.53604 5.56181 5.70398 6.10858 6.23318 6.58031 6.93465 7.09086 7.25952 8.60276 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.001628 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.743526 B =17193.877639 C =18124.256452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.003 3.997 3 C -0.240 4.240 4 C 0.537 3.463 5 O -0.579 6.579 6 N -0.719 5.719 7 C 0.130 3.870 8 C -0.132 4.132 9 C 0.118 3.882 10 N -0.609 5.609 11 C 0.069 3.931 12 C 0.530 3.470 13 O -0.562 6.562 14 C -0.106 4.106 15 S -0.180 6.180 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.048 3.952 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.239 1.239 24 C -0.145 4.145 25 C -0.169 4.169 26 C -0.164 4.164 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.151 0.849 31 H 0.413 0.587 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -29.938 -15.739 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.001 3.999 3 C -0.260 4.260 4 C 0.328 3.672 5 O -0.462 6.462 6 N -0.371 5.371 7 C 0.005 3.995 8 C -0.171 4.171 9 C -0.005 4.005 10 N -0.342 5.342 11 C -0.073 4.073 12 C 0.317 3.683 13 O -0.440 6.440 14 C -0.257 4.257 15 S 0.046 5.954 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.158 4.158 19 N -0.554 5.554 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.163 1.163 24 C -0.163 4.163 25 C -0.205 4.205 26 C -0.201 4.201 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.147 0.853 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.137 -30.427 -14.458 34.656 hybrid contribution 1.246 1.206 -0.135 1.740 sum -6.891 -29.221 -14.592 33.381 Atomic orbital electron populations 1.21096 0.91666 1.02312 1.02857 1.21997 0.95824 0.93472 0.88640 1.22367 1.01432 0.90658 1.11564 1.18963 0.86628 0.85251 0.76325 1.90749 1.16645 1.88226 1.50565 1.45847 1.13597 1.05217 1.72430 1.21125 0.94514 0.82018 1.01837 1.21998 0.99077 0.93117 1.02934 1.21445 0.91426 0.83862 1.03795 1.47828 1.45070 1.34247 1.07074 1.22138 0.97007 1.00623 0.87553 1.20061 0.81799 0.83193 0.83229 1.90684 1.49886 1.62267 1.41199 1.23294 1.02728 0.99959 0.99716 1.84746 1.58590 1.42870 1.09163 1.22440 1.28264 1.18696 0.98119 0.91867 1.25528 0.94369 0.93748 1.02152 1.70015 1.32865 1.21877 1.30620 0.85890 0.81468 0.79287 0.79873 1.18671 1.18326 1.16260 1.21357 1.00760 0.87944 1.06194 1.23179 1.00440 0.97219 0.99679 1.23082 1.04134 1.01355 0.91510 0.90985 0.90943 0.91472 0.83106 0.75039 0.90614 0.93176 0.92838 0.88775 0.86755 0.91793 0.91080 0.90804 0.87747 0.86892 0.87148 0.91372 0.85266 0.88185 0.86778 0.86751 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 7.90 71.24 0.56 -1.54 16 2 C 0.00 0.04 5.81 -17.62 -0.10 -0.06 16 3 C -0.24 -3.66 9.67 23.43 0.23 -3.44 16 4 C 0.54 11.09 7.61 86.57 0.66 11.74 16 5 O -0.58 -15.92 13.28 -4.07 -0.05 -15.98 16 6 N -0.72 -11.91 5.55 -466.71 -2.59 -14.50 16 7 C 0.13 2.26 5.67 86.38 0.49 2.75 16 8 C -0.13 -2.18 5.65 30.59 0.17 -2.01 16 9 C 0.12 2.22 5.41 86.38 0.47 2.69 16 10 N -0.61 -14.01 2.87 -846.75 -2.43 -16.44 16 11 C 0.07 1.01 10.24 127.77 1.31 2.32 16 12 C 0.53 18.13 7.69 87.65 0.67 18.81 16 13 O -0.56 -23.95 15.44 -3.04 -0.05 -24.00 16 14 C -0.11 -3.97 4.71 71.23 0.34 -3.64 16 15 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 16 C -0.53 -30.55 10.04 67.95 0.68 -29.87 16 17 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 18 C 0.05 2.78 5.50 84.85 0.47 3.25 16 19 N -0.92 -55.45 13.97 21.65 0.30 -55.14 16 20 Si 0.91 44.99 27.74 68.60 1.90 46.89 16 21 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 24 C -0.14 -1.42 6.01 -11.54 -0.07 -1.49 16 25 C -0.17 -1.30 9.77 30.62 0.30 -1.00 16 26 C -0.16 -1.33 10.10 30.62 0.31 -1.02 16 27 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 28 H 0.07 0.94 6.31 -2.39 -0.02 0.92 16 29 H 0.07 1.50 6.12 -2.38 -0.01 1.49 16 30 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.41 4.76 8.46 -92.71 -0.78 3.98 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 37 H 0.06 1.56 7.42 -2.38 -0.02 1.54 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 1.17 6.44 -2.39 -0.02 1.16 16 40 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 41 H 0.11 3.84 7.40 -2.40 -0.02 3.83 16 42 H 0.11 3.83 8.11 -2.39 -0.02 3.81 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 0.81 6.42 -2.39 -0.02 0.80 16 46 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.35 408.68 2.65 -76.70 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.13 Total: 15.14 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.48 Total: -2.51 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -4.72 Total: -86.09 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.10 Total: -39.98 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -79.35 2.65 -76.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720450903.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.195 kcal (2) G-P(sol) polarization free energy of solvation -79.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds