Wall clock time and date at job start Sat Apr 11 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32993 * 120.00177 * 2 1 4 4 C 1.50699 * 119.99662 * 179.97438 * 3 2 1 5 5 C 1.47096 * 120.00047 * 359.97438 * 3 2 1 6 6 O 1.21616 * 120.00309 * 52.54505 * 5 3 2 7 7 N 1.34777 * 119.99774 * 232.54604 * 5 3 2 8 8 C 1.46501 * 120.00158 * 7.28177 * 7 5 3 9 9 C 1.53004 * 109.46726 * 260.64612 * 8 7 5 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46876 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99884 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.99813 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.46983 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00083 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00103 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00041 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00020 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47269 * 119.99531 * 20 18 16 23 23 H 1.48495 * 109.47050 * 240.00025 * 20 18 16 24 24 C 1.46508 * 119.99968 * 187.27998 * 7 5 3 25 25 C 1.53002 * 117.49570 * 16.35313 * 24 7 5 26 26 C 1.53001 * 117.49585 * 307.73226 * 24 7 5 27 27 H 1.09004 * 109.47279 * 300.00547 * 1 2 3 28 28 H 1.08997 * 109.46732 * 60.00100 * 1 2 3 29 29 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99522 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47394 * 232.89224 * 4 3 2 32 32 H 1.08999 * 109.47640 * 352.90231 * 4 3 2 33 33 H 1.09004 * 109.46590 * 112.89876 * 4 3 2 34 34 H 1.08997 * 109.47057 * 20.64692 * 8 7 5 35 35 H 1.08998 * 109.47198 * 140.64784 * 8 7 5 36 36 H 1.08997 * 109.47419 * 299.99859 * 9 8 7 37 37 H 1.08998 * 109.47141 * 60.00137 * 9 8 7 38 38 H 1.08997 * 109.47297 * 300.00234 * 10 9 8 39 39 H 1.09008 * 109.46782 * 60.00289 * 10 9 8 40 40 H 0.96997 * 120.00208 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.47398 * 300.00072 * 14 12 11 42 42 H 1.08998 * 109.47092 * 60.00308 * 14 12 11 43 43 H 0.97004 * 120.00066 * 180.02562 * 19 18 16 44 44 H 1.08994 * 115.55223 * 162.05912 * 24 7 5 45 45 H 1.08997 * 117.50041 * 359.97438 * 25 24 7 46 46 H 1.08996 * 117.49994 * 145.02556 * 25 24 7 47 47 H 1.09001 * 117.49380 * 214.97689 * 26 24 7 48 48 H 1.09001 * 117.50327 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1516 0.0006 5 6 1.4366 2.4257 -0.0006 6 8 0.5775 2.6323 0.8351 7 7 1.7148 3.3639 -0.9273 8 6 2.6320 3.0573 -2.0277 9 6 4.0183 3.6201 -1.7079 10 6 4.9764 3.2993 -2.8569 11 7 6.3037 3.8387 -2.5510 12 6 7.3155 3.6758 -3.4264 13 8 7.1269 3.0830 -4.4676 14 6 8.6809 4.2300 -3.1114 15 16 9.8139 3.8521 -4.4714 16 6 11.2893 4.5926 -3.8554 17 1 11.2850 5.0875 -2.8955 18 6 12.4568 4.5407 -4.6042 19 7 12.4620 3.9379 -5.7743 20 14 14.0211 5.3252 -3.9508 21 1 13.7525 5.9334 -2.6229 22 1 15.0760 4.2887 -3.8166 23 1 14.4782 6.3776 -4.8934 24 6 1.1000 4.6905 -0.8341 25 6 0.4718 5.0855 0.5039 26 6 -0.4222 4.7552 -0.6931 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.0470 -0.9353 0.0004 31 1 4.0421 1.7717 0.8201 32 1 4.0423 0.1319 0.1279 33 1 4.0427 1.5512 -0.9461 34 1 2.6988 1.9768 -2.1547 35 1 2.2599 3.5088 -2.9474 36 1 3.9515 4.7005 -1.5810 37 1 4.3905 3.1685 -0.7883 38 1 5.0431 2.2188 -2.9834 39 1 4.6044 3.7506 -3.7768 40 1 6.4544 4.3130 -1.7184 41 1 8.6140 5.3105 -2.9844 42 1 9.0531 3.7785 -2.1919 43 1 13.2780 3.9014 -6.2975 44 1 1.5855 5.4754 -1.4138 45 1 0.5156 4.3584 1.3147 46 1 0.5441 6.1306 0.8048 47 1 -0.9378 5.5831 -1.1797 48 1 -0.9662 3.8110 -0.6700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720643762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:35 Heat of formation + Delta-G solvation = -44.612415 kcal Electronic energy + Delta-G solvation = -26735.661054 eV Core-core repulsion = 22917.684033 eV Total energy + Delta-G solvation = -3817.977022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68533 -40.54284 -37.89931 -37.44806 -35.90971 -34.96650 -34.57051 -32.47257 -31.07501 -30.40524 -27.68712 -26.45741 -25.74046 -24.79577 -23.33305 -22.85820 -21.94496 -21.68484 -19.80444 -19.04230 -17.74172 -17.73058 -17.40218 -16.92078 -16.86201 -16.80319 -16.47864 -16.01853 -15.74871 -15.44562 -14.96324 -14.80518 -14.68335 -14.45070 -14.35513 -14.05260 -13.89383 -13.68903 -13.54342 -13.33200 -13.14291 -13.08956 -12.90300 -12.74223 -12.64582 -12.56496 -12.33760 -12.22114 -12.02788 -11.69637 -11.68845 -11.30446 -11.14776 -10.94171 -10.45705 -10.24816 -10.06350 -9.92513 -9.45702 -8.64345 -8.33694 -6.10959 0.56761 1.29140 1.42131 1.48825 1.59446 1.66242 1.71159 1.91758 2.27831 2.37949 2.96538 3.00611 3.34100 3.42646 3.81885 3.91701 3.93846 3.95895 4.02992 4.11908 4.13390 4.23719 4.31992 4.32851 4.41303 4.51993 4.54950 4.55750 4.66012 4.68729 4.73448 4.78382 4.79793 4.82500 4.98400 5.02902 5.08202 5.10722 5.29338 5.33836 5.43709 5.47872 5.49781 5.60445 5.71130 6.21377 6.32417 6.54912 7.08110 7.10217 7.29332 8.75611 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.001814 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.614207 B =15435.523245 C =15928.668747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.198 4.198 4 C -0.122 4.122 5 C 0.554 3.446 6 O -0.561 6.561 7 N -0.576 5.576 8 C 0.112 3.888 9 C -0.146 4.146 10 C 0.123 3.877 11 N -0.713 5.713 12 C 0.534 3.466 13 O -0.565 6.565 14 C -0.131 4.131 15 S -0.152 6.152 16 C -0.545 4.545 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.275 1.275 24 C 0.070 3.930 25 C -0.199 4.199 26 C -0.185 4.185 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.155 0.845 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 -1.652 14.180 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.178 4.178 5 C 0.345 3.655 6 O -0.441 6.441 7 N -0.305 5.305 8 C -0.010 4.010 9 C -0.185 4.185 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.320 3.680 13 O -0.443 6.443 14 C -0.282 4.282 15 S 0.075 5.925 16 C -0.692 4.692 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.034 4.034 25 C -0.236 4.236 26 C -0.224 4.224 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.172 0.828 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.132 0.868 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.780 -2.572 12.735 28.869 hybrid contribution 1.197 1.177 1.548 2.283 sum -24.584 -1.395 14.283 28.466 Atomic orbital electron populations 1.20981 0.92916 1.03284 1.01941 1.23721 0.96507 0.97482 0.92947 1.21531 0.97536 0.92387 1.08598 1.21221 0.88967 1.04214 1.03416 1.18953 0.81846 0.84482 0.80198 1.90648 1.33917 1.79448 1.40089 1.47359 1.45222 1.11423 1.26496 1.21702 0.87690 1.02573 0.89059 1.22357 0.93981 1.03579 0.98566 1.21291 0.81053 0.99259 0.98531 1.45719 1.09433 1.58881 1.22629 1.19998 0.85905 0.78767 0.83370 1.90699 1.83994 1.42811 1.26838 1.23383 0.95354 1.05243 1.04249 1.85562 1.05122 1.75542 1.26262 1.23237 0.96125 1.41731 1.08154 0.89931 1.26116 1.02695 0.95626 0.94797 1.70184 1.29565 1.42202 1.12793 0.84918 0.76554 0.77863 0.78695 1.18031 1.19993 1.20025 1.21959 0.93379 0.85746 1.02278 1.23671 1.03545 1.02751 0.93680 1.23207 0.93367 1.02988 1.02828 0.91748 0.92392 0.89971 0.83433 0.91662 0.90060 0.89143 0.88537 0.88351 0.89515 0.89256 0.91598 0.91729 0.74722 0.87308 0.87234 0.92029 0.82790 0.87469 0.87702 0.86845 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.96 71.24 0.64 -1.26 16 2 C -0.09 -1.14 9.95 24.52 0.24 -0.89 16 3 C -0.20 -2.90 4.52 -18.71 -0.08 -2.99 16 4 C -0.12 -1.37 8.41 71.24 0.60 -0.77 16 5 C 0.55 10.24 6.30 86.57 0.55 10.78 16 6 O -0.56 -13.75 11.09 -4.08 -0.05 -13.80 16 7 N -0.58 -8.12 2.85 -802.06 -2.29 -10.40 16 8 C 0.11 1.11 4.90 86.38 0.42 1.54 16 9 C -0.15 -1.42 4.65 30.60 0.14 -1.27 16 10 C 0.12 2.00 5.61 86.38 0.48 2.48 16 11 N -0.71 -14.90 5.56 -463.04 -2.57 -17.47 16 12 C 0.53 18.05 7.85 87.65 0.69 18.74 16 13 O -0.57 -24.56 15.86 -3.05 -0.05 -24.61 16 14 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 15 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 16 C -0.54 -30.53 9.50 67.95 0.65 -29.89 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 20 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.07 0.95 6.61 44.99 0.30 1.24 16 25 C -0.20 -3.29 9.62 30.60 0.29 -2.99 16 26 C -0.19 -2.83 9.87 30.60 0.30 -2.53 16 27 H 0.06 1.19 6.99 -2.38 -0.02 1.18 16 28 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.15 1.23 7.88 -2.91 -0.02 1.21 16 31 H 0.06 0.78 7.98 -2.39 -0.02 0.76 16 32 H 0.08 0.76 7.83 -2.39 -0.02 0.74 16 33 H 0.09 0.89 3.83 -2.38 -0.01 0.88 16 34 H 0.10 0.91 5.77 -2.39 -0.01 0.90 16 35 H 0.10 0.77 8.13 -2.39 -0.02 0.76 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.84 5.41 -2.39 -0.01 0.83 16 38 H 0.07 1.16 8.05 -2.39 -0.02 1.15 16 39 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.42 5.98 8.47 -92.71 -0.79 5.20 16 41 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 42 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.11 2.44 5.26 -3.71 -0.02 2.42 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.07 1.47 7.56 -2.39 -0.02 1.45 16 Total: -1.00 -79.60 400.93 2.50 -77.10 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.18 Total: 19.67 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 6.12 Total: -11.11 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -4.57 Total: -82.88 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.09 Total: -38.40 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -79.60 2.50 -77.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720643762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.488 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds