Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32993 * 120.00098 * 2 1 4 4 C 1.50702 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.47103 * 120.00278 * 180.02562 * 3 2 1 6 6 O 1.21623 * 119.99483 * 337.67551 * 5 3 2 7 7 N 1.34775 * 120.00651 * 157.68629 * 5 3 2 8 8 C 1.46502 * 119.99627 * 10.11208 * 7 5 3 9 9 C 1.53007 * 109.46771 * 94.19482 * 8 7 5 10 10 C 1.52997 * 109.47183 * 183.16825 * 9 8 7 11 11 N 1.46492 * 109.47284 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00120 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99970 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99773 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.46799 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99749 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00599 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99993 * 179.97438 * 16 15 14 19 19 N 1.31638 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00307 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46682 * 60.00402 * 20 18 16 22 22 H 1.48501 * 109.47162 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47257 * 300.00454 * 20 18 16 24 24 C 1.46497 * 120.00025 * 190.12242 * 7 5 3 25 25 C 1.52999 * 117.50112 * 18.82242 * 24 7 5 26 26 C 1.53003 * 117.49728 * 310.19883 * 24 7 5 27 27 H 1.08993 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47660 * 300.01310 * 1 2 3 29 29 H 1.09004 * 109.46731 * 60.01004 * 1 2 3 30 30 H 1.07998 * 120.00217 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47462 * 277.28494 * 4 3 2 32 32 H 1.08995 * 109.47291 * 37.28856 * 4 3 2 33 33 H 1.09007 * 109.46675 * 157.28537 * 4 3 2 34 34 H 1.08999 * 109.47242 * 334.19692 * 8 7 5 35 35 H 1.09001 * 109.46852 * 214.19078 * 8 7 5 36 36 H 1.08999 * 109.47110 * 303.17314 * 9 8 7 37 37 H 1.09005 * 109.46772 * 63.17080 * 9 8 7 38 38 H 1.09003 * 109.47191 * 300.00646 * 10 9 8 39 39 H 1.09007 * 109.46796 * 59.99956 * 10 9 8 40 40 H 0.97005 * 119.99789 * 0.02562 * 11 10 9 41 41 H 1.08996 * 109.47075 * 299.99511 * 14 12 11 42 42 H 1.08991 * 109.47185 * 60.00023 * 14 12 11 43 43 H 0.97000 * 119.99930 * 179.97438 * 19 18 16 44 44 H 1.09005 * 115.55045 * 164.53139 * 24 7 5 45 45 H 1.08998 * 117.49616 * 359.97438 * 25 24 7 46 46 H 1.08998 * 117.50037 * 145.02107 * 25 24 7 47 47 H 1.08997 * 117.49433 * 214.98215 * 26 24 7 48 48 H 1.08997 * 117.49608 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4184 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2512 0.1773 0.3991 7 7 4.3168 2.2316 -0.4437 8 6 3.6013 3.4809 -0.7151 9 6 3.6621 4.3820 0.5200 10 6 2.8487 5.6525 0.2650 11 7 2.9074 6.5155 1.4472 12 6 2.2592 7.6972 1.4519 13 8 1.6269 8.0458 0.4775 14 6 2.3202 8.5853 2.6679 15 16 1.3565 10.0875 2.3668 16 6 1.5940 10.9164 3.9033 17 1 2.1951 10.4601 4.6759 18 6 1.0095 12.1566 4.1205 19 7 0.2773 12.7131 3.1787 20 14 1.2608 13.0352 5.7497 21 1 2.7101 13.2796 5.9618 22 1 0.5373 14.3319 5.7295 23 1 0.7342 12.1922 6.8530 24 6 5.7646 2.1560 -0.6543 25 6 6.3874 0.7650 -0.7881 26 6 6.6150 1.5860 0.4828 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 2.0470 -0.9353 0.0004 31 1 1.1243 2.7062 -1.0201 32 1 0.5285 2.3629 0.6216 33 1 2.0577 3.2456 0.3963 34 1 2.5607 3.2595 -0.9523 35 1 4.0662 3.9898 -1.5594 36 1 3.2483 3.8515 1.3776 37 1 4.6990 4.6493 0.7239 38 1 3.2625 6.1829 -0.5926 39 1 1.8118 5.3851 0.0610 40 1 3.4129 6.2365 2.2268 41 1 1.9073 8.0551 3.5261 42 1 3.3571 8.8529 2.8707 43 1 -0.1314 13.5795 3.3306 44 1 6.1955 2.9603 -1.2507 45 1 5.7199 -0.0940 -0.7190 46 1 7.2282 0.6537 -1.4727 47 1 7.6055 2.0150 0.6341 48 1 6.0972 1.2677 1.3876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720643763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = 8.007935 kcal Electronic energy + Delta-G solvation = -26708.460631 eV Core-core repulsion = 22892.765399 eV Total energy + Delta-G solvation = -3815.695232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11966 -39.23589 -37.23157 -37.13254 -35.27487 -34.24147 -32.44234 -31.54985 -29.86005 -29.11240 -26.78425 -25.57961 -25.12451 -23.86163 -22.64463 -22.11191 -20.66432 -20.37338 -18.63836 -17.85806 -17.36375 -16.53081 -16.34374 -16.06480 -15.77511 -15.68486 -15.41576 -14.81675 -14.66005 -14.39842 -14.21332 -13.99241 -13.58561 -13.43515 -13.28660 -13.12826 -13.11153 -12.92127 -12.74543 -12.52964 -12.03539 -11.90501 -11.75625 -11.60936 -11.38444 -11.29796 -11.06176 -11.04992 -10.97982 -10.78369 -10.54159 -9.89098 -9.84354 -9.47606 -9.41383 -9.08001 -8.94888 -8.72599 -8.26370 -6.51980 -6.23106 -3.93893 1.01048 2.46409 2.72048 3.02409 3.05748 3.22483 3.26566 3.29984 3.58934 3.71787 4.04977 4.19145 4.30877 4.49260 4.54532 4.65258 4.68601 4.70139 4.77781 4.82503 4.86092 5.03948 5.05887 5.11967 5.12381 5.15404 5.22108 5.25035 5.39478 5.42472 5.46800 5.47198 5.56925 5.64428 5.70281 5.73910 5.87216 5.89598 6.01873 6.04288 6.11801 6.13681 6.34271 6.54705 6.99543 7.57796 7.64849 7.80311 8.33520 8.56494 9.22132 10.84227 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.001890 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.029983 B =14811.174284 C =15602.326382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.191 4.191 4 C -0.153 4.153 5 C 0.557 3.443 6 O -0.536 6.536 7 N -0.578 5.578 8 C 0.069 3.931 9 C -0.154 4.154 10 C 0.122 3.878 11 N -0.740 5.740 12 C 0.532 3.468 13 O -0.517 6.517 14 C -0.154 4.154 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.069 3.931 25 C -0.188 4.188 26 C -0.184 4.184 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -25.955 -8.393 28.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 C -0.194 4.194 4 C -0.208 4.208 5 C 0.349 3.651 6 O -0.415 6.415 7 N -0.308 5.308 8 C -0.054 4.054 9 C -0.193 4.193 10 C -0.003 4.003 11 N -0.394 5.394 12 C 0.318 3.682 13 O -0.391 6.391 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.035 4.035 25 C -0.226 4.226 26 C -0.222 4.222 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.496 -25.700 -9.900 28.297 hybrid contribution 1.333 0.133 2.591 2.916 sum 7.829 -25.567 -7.309 27.719 Atomic orbital electron populations 1.20997 0.91878 1.03113 1.02880 1.23522 0.96457 0.97508 0.91871 1.21373 0.92461 0.96961 1.08619 1.21778 1.01118 0.95437 1.02480 1.18533 0.87821 0.82063 0.76730 1.90699 1.69579 1.34958 1.46249 1.47153 1.06504 1.11549 1.65590 1.22821 1.01454 0.83807 0.97283 1.22292 1.01900 0.95817 0.99289 1.21185 1.00289 0.89661 0.89148 1.45982 1.54936 1.20351 1.18175 1.20312 0.77999 0.80709 0.89165 1.90702 1.40536 1.72486 1.35387 1.23534 1.06115 1.02660 0.98158 1.85380 1.63695 1.11366 1.22890 1.22826 1.37658 1.06798 1.01168 0.90979 1.24997 0.94503 0.96296 0.97793 1.70009 1.30646 1.16883 1.32748 0.86222 0.78502 0.78557 0.82210 1.19936 1.20805 1.19937 1.21729 0.79585 0.98907 1.03275 1.23587 1.02741 0.96233 0.99996 1.23263 1.00571 1.04090 0.94294 0.91408 0.90431 0.90585 0.85954 0.90130 0.90995 0.88316 0.85313 0.90069 0.90434 0.90334 0.91266 0.91295 0.76772 0.89215 0.89225 0.92118 0.85226 0.85787 0.89059 0.88713 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 9.00 36.00 0.32 -0.35 16 2 C -0.07 -0.54 9.82 -36.13 -0.35 -0.90 16 3 C -0.19 -1.55 5.85 -102.85 -0.60 -2.15 16 4 C -0.15 -0.96 7.29 36.01 0.26 -0.69 16 5 C 0.56 5.63 7.25 -12.66 -0.09 5.54 16 6 O -0.54 -6.85 12.12 5.26 0.06 -6.78 16 7 N -0.58 -4.78 2.84 -167.48 -0.48 -5.26 16 8 C 0.07 0.43 4.92 -4.04 -0.02 0.41 16 9 C -0.15 -1.06 4.68 -26.73 -0.12 -1.19 16 10 C 0.12 1.17 5.56 -4.05 -0.02 1.14 16 11 N -0.74 -8.94 5.56 -60.29 -0.33 -9.28 16 12 C 0.53 9.44 7.85 -10.98 -0.09 9.35 16 13 O -0.52 -11.23 15.86 5.56 0.09 -11.14 16 14 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 17 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.08 5.49 -17.42 -0.10 1.98 16 19 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 20 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 C 0.07 0.55 6.63 -67.93 -0.45 0.10 16 25 C -0.19 -1.65 9.63 -26.73 -0.26 -1.91 16 26 C -0.18 -1.60 9.84 -26.73 -0.26 -1.87 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.38 7.42 -51.93 -0.39 0.00 16 29 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 30 H 0.12 0.98 7.67 -52.49 -0.40 0.58 16 31 H 0.08 0.40 7.23 -51.93 -0.38 0.02 16 32 H 0.07 0.43 6.79 -51.93 -0.35 0.07 16 33 H 0.10 0.63 2.15 -51.92 -0.11 0.52 16 34 H 0.13 0.72 3.08 -76.72 -0.24 0.49 16 35 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 36 H 0.08 0.56 7.01 -51.93 -0.36 0.20 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.67 7.73 -51.93 -0.40 0.27 16 40 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.13 0.78 8.13 -51.93 -0.42 0.36 16 45 H 0.12 1.38 5.54 -51.93 -0.29 1.09 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.10 1.08 7.28 -51.93 -0.38 0.70 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -35.68 398.31 -9.83 -45.51 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.41 Total: 1.90 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.27 Total: -8.14 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.08 Total: -39.74 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.15 Total: -17.92 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.68 -9.83 -45.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720643763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.520 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds