Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32993 * 120.00098 * 2 1 4 4 C 1.50702 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.47103 * 120.00278 * 180.02562 * 3 2 1 6 6 O 1.21623 * 119.99483 * 337.67551 * 5 3 2 7 7 N 1.34775 * 120.00651 * 157.68629 * 5 3 2 8 8 C 1.46502 * 119.99627 * 10.11208 * 7 5 3 9 9 C 1.53007 * 109.46771 * 94.19482 * 8 7 5 10 10 C 1.52997 * 109.47183 * 183.16825 * 9 8 7 11 11 N 1.46492 * 109.47284 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00120 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99970 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99773 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.46799 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99749 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00599 * 0.02562 * 16 15 14 18 18 C 1.38806 * 119.99993 * 179.97438 * 16 15 14 19 19 N 1.31638 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00307 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46682 * 60.00402 * 20 18 16 22 22 H 1.48501 * 109.47162 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47257 * 300.00454 * 20 18 16 24 24 C 1.46497 * 120.00025 * 190.12242 * 7 5 3 25 25 C 1.52999 * 117.50112 * 18.82242 * 24 7 5 26 26 C 1.53003 * 117.49728 * 310.19883 * 24 7 5 27 27 H 1.08993 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47660 * 300.01310 * 1 2 3 29 29 H 1.09004 * 109.46731 * 60.01004 * 1 2 3 30 30 H 1.07998 * 120.00217 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47462 * 277.28494 * 4 3 2 32 32 H 1.08995 * 109.47291 * 37.28856 * 4 3 2 33 33 H 1.09007 * 109.46675 * 157.28537 * 4 3 2 34 34 H 1.08999 * 109.47242 * 334.19692 * 8 7 5 35 35 H 1.09001 * 109.46852 * 214.19078 * 8 7 5 36 36 H 1.08999 * 109.47110 * 303.17314 * 9 8 7 37 37 H 1.09005 * 109.46772 * 63.17080 * 9 8 7 38 38 H 1.09003 * 109.47191 * 300.00646 * 10 9 8 39 39 H 1.09007 * 109.46796 * 59.99956 * 10 9 8 40 40 H 0.97005 * 119.99789 * 0.02562 * 11 10 9 41 41 H 1.08996 * 109.47075 * 299.99511 * 14 12 11 42 42 H 1.08991 * 109.47185 * 60.00023 * 14 12 11 43 43 H 0.97000 * 119.99930 * 179.97438 * 19 18 16 44 44 H 1.09005 * 115.55045 * 164.53139 * 24 7 5 45 45 H 1.08998 * 117.49616 * 359.97438 * 25 24 7 46 46 H 1.08998 * 117.50037 * 145.02107 * 25 24 7 47 47 H 1.08997 * 117.49433 * 214.98215 * 26 24 7 48 48 H 1.08997 * 117.49608 * 359.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4184 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2512 0.1773 0.3991 7 7 4.3168 2.2316 -0.4437 8 6 3.6013 3.4809 -0.7151 9 6 3.6621 4.3820 0.5200 10 6 2.8487 5.6525 0.2650 11 7 2.9074 6.5155 1.4472 12 6 2.2592 7.6972 1.4519 13 8 1.6269 8.0458 0.4775 14 6 2.3202 8.5853 2.6679 15 16 1.3565 10.0875 2.3668 16 6 1.5940 10.9164 3.9033 17 1 2.1951 10.4601 4.6759 18 6 1.0095 12.1566 4.1205 19 7 0.2773 12.7131 3.1787 20 14 1.2608 13.0352 5.7497 21 1 2.7101 13.2796 5.9618 22 1 0.5373 14.3319 5.7295 23 1 0.7342 12.1922 6.8530 24 6 5.7646 2.1560 -0.6543 25 6 6.3874 0.7650 -0.7881 26 6 6.6150 1.5860 0.4828 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 2.0470 -0.9353 0.0004 31 1 1.1243 2.7062 -1.0201 32 1 0.5285 2.3629 0.6216 33 1 2.0577 3.2456 0.3963 34 1 2.5607 3.2595 -0.9523 35 1 4.0662 3.9898 -1.5594 36 1 3.2483 3.8515 1.3776 37 1 4.6990 4.6493 0.7239 38 1 3.2625 6.1829 -0.5926 39 1 1.8118 5.3851 0.0610 40 1 3.4129 6.2365 2.2268 41 1 1.9073 8.0551 3.5261 42 1 3.3571 8.8529 2.8707 43 1 -0.1314 13.5795 3.3306 44 1 6.1955 2.9603 -1.2507 45 1 5.7199 -0.0940 -0.7190 46 1 7.2282 0.6537 -1.4727 47 1 7.6055 2.0150 0.6341 48 1 6.0972 1.2677 1.3876 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720643763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -15.102213 kcal Electronic energy + Delta-G solvation = -26709.462762 eV Core-core repulsion = 22892.765399 eV Total energy + Delta-G solvation = -3816.697363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.80223 -40.54904 -37.94989 -37.82708 -36.10910 -35.08630 -34.56741 -32.53071 -30.63760 -30.15880 -27.72191 -27.35570 -25.91910 -24.50693 -23.32646 -22.80989 -21.75329 -21.21852 -19.80373 -19.27222 -18.02880 -17.74299 -17.27149 -16.91900 -16.85976 -16.81935 -16.50202 -16.25396 -15.75308 -15.65117 -15.01004 -14.73748 -14.66687 -14.45327 -14.12680 -14.06906 -14.04647 -13.75777 -13.52063 -13.29629 -13.19328 -13.15379 -12.85657 -12.69605 -12.59735 -12.40058 -12.18159 -12.03752 -11.95458 -11.72978 -11.57868 -11.13987 -11.11689 -10.94026 -10.57859 -10.26127 -10.06624 -10.01205 -9.39496 -8.64354 -8.33317 -6.10800 0.38369 1.28654 1.44552 1.48028 1.57682 1.65740 1.84236 2.03520 2.28290 2.37985 2.96215 3.00639 3.34160 3.43645 3.75919 3.92461 3.93900 3.95512 4.02146 4.07799 4.15006 4.22015 4.25977 4.31990 4.35144 4.46903 4.54615 4.60174 4.63041 4.65453 4.79021 4.81366 4.84172 4.90359 5.00108 5.02536 5.07043 5.09435 5.27710 5.32479 5.43034 5.48466 5.48951 5.60098 5.70107 6.20914 6.33904 6.53240 7.08079 7.09091 7.28050 8.75459 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.001890 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.029983 B =14811.174284 C =15602.326382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.150 4.150 5 C 0.547 3.453 6 O -0.572 6.572 7 N -0.575 5.575 8 C 0.067 3.933 9 C -0.139 4.139 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.535 3.465 13 O -0.563 6.563 14 C -0.132 4.132 15 S -0.149 6.149 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.263 1.263 24 C 0.072 3.928 25 C -0.195 4.195 26 C -0.187 4.187 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.158 0.842 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -26.244 -7.735 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.206 4.206 4 C -0.205 4.205 5 C 0.339 3.661 6 O -0.454 6.454 7 N -0.304 5.304 8 C -0.055 4.055 9 C -0.177 4.177 10 C -0.003 4.003 11 N -0.368 5.368 12 C 0.320 3.680 13 O -0.441 6.441 14 C -0.283 4.283 15 S 0.078 5.922 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.032 4.032 25 C -0.233 4.233 26 C -0.225 4.225 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.175 0.825 45 H 0.115 0.885 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.394 -26.026 -9.233 28.588 hybrid contribution 1.122 0.047 2.344 2.600 sum 8.517 -25.979 -6.888 28.194 Atomic orbital electron populations 1.21028 0.89978 1.03977 1.03522 1.23677 0.97805 0.96836 0.91007 1.21460 0.91524 0.98108 1.09520 1.21792 1.00936 0.94177 1.03571 1.18973 0.88766 0.82003 0.76369 1.90690 1.70434 1.36347 1.47958 1.47231 1.06758 1.11680 1.64703 1.22948 1.02158 0.82909 0.97447 1.22141 1.01616 0.94401 0.99582 1.21343 1.01054 0.90016 0.87847 1.45745 1.52967 1.18509 1.19605 1.19977 0.78287 0.81892 0.87829 1.90693 1.42953 1.73839 1.36638 1.23390 1.05586 0.99438 0.99906 1.85528 1.66307 1.16278 1.24100 1.23174 1.37713 1.07285 1.01334 0.90002 1.26113 0.93946 0.97180 1.01917 1.70174 1.31874 1.17394 1.35230 0.85027 0.78919 0.77152 0.77050 1.18716 1.20432 1.18721 1.22022 0.79455 0.98997 1.02710 1.23516 1.03168 0.95933 1.00679 1.23209 1.01420 1.04599 0.93303 0.90571 0.89957 0.89465 0.87384 0.88544 0.90492 0.88463 0.84428 0.88285 0.90493 0.89777 0.91361 0.91065 0.74870 0.87345 0.87377 0.92006 0.82499 0.88469 0.87225 0.86888 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.00 71.24 0.64 -0.48 16 2 C -0.07 -1.05 9.82 24.52 0.24 -0.81 16 3 C -0.20 -3.12 5.85 -18.70 -0.11 -3.23 16 4 C -0.15 -1.56 7.29 71.24 0.52 -1.04 16 5 C 0.55 10.92 7.25 86.57 0.63 11.55 16 6 O -0.57 -15.26 12.12 -4.10 -0.05 -15.31 16 7 N -0.58 -8.65 2.84 -802.04 -2.28 -10.93 16 8 C 0.07 0.67 4.92 86.38 0.42 1.09 16 9 C -0.14 -1.52 4.68 30.60 0.14 -1.38 16 10 C 0.12 2.00 5.56 86.38 0.48 2.48 16 11 N -0.71 -15.41 5.56 -463.06 -2.57 -17.98 16 12 C 0.53 18.21 7.85 87.66 0.69 18.90 16 13 O -0.56 -24.35 15.86 -3.02 -0.05 -24.40 16 14 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 15 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 16 C -0.55 -30.79 9.50 67.96 0.65 -30.15 16 17 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -55.30 13.22 21.65 0.29 -55.02 16 20 Si 1.00 43.06 29.55 68.60 2.03 45.09 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 C 0.07 1.03 6.63 44.99 0.30 1.33 16 25 C -0.20 -3.36 9.63 30.60 0.29 -3.06 16 26 C -0.19 -3.13 9.84 30.60 0.30 -2.83 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.67 7.42 -2.39 -0.02 0.65 16 29 H 0.09 0.59 8.10 -2.38 -0.02 0.57 16 30 H 0.11 1.82 7.67 -2.91 -0.02 1.80 16 31 H 0.10 0.70 7.23 -2.39 -0.02 0.68 16 32 H 0.08 0.75 6.79 -2.39 -0.02 0.73 16 33 H 0.10 1.02 2.15 -2.38 -0.01 1.02 16 34 H 0.14 1.18 3.08 -25.67 -0.08 1.10 16 35 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 36 H 0.08 0.91 7.01 -2.39 -0.02 0.89 16 37 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.21 7.73 -2.38 -0.02 1.19 16 40 H 0.41 6.47 8.47 -92.70 -0.79 5.68 16 41 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 42 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.16 1.38 8.13 -2.38 -0.02 1.36 16 45 H 0.10 2.27 5.54 -2.39 -0.01 2.26 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.07 1.62 7.28 -2.39 -0.02 1.61 16 Total: -1.00 -80.66 398.31 2.42 -78.23 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.12 Total: 20.55 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.10 Total: -10.97 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -4.57 Total: -83.93 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.10 Total: -39.71 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -80.66 2.42 -78.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720643763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.129 kcal (2) G-P(sol) polarization free energy of solvation -80.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds