Wall clock time and date at job start Sat Apr 11 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50694 * 119.99799 * 2 1 4 4 C 1.30999 * 120.00027 * 179.97438 * 2 1 3 5 5 C 1.50697 * 120.00000 * 185.81105 * 4 2 1 6 6 C 1.50699 * 120.00096 * 5.80308 * 4 2 1 7 7 C 1.50710 * 109.46691 * 95.00419 * 6 4 2 8 8 O 1.21281 * 119.99936 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99849 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99949 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84597 * 23.79513 * 10 9 7 12 12 C 1.53777 * 113.61642 * 155.00024 * 10 9 7 13 13 C 1.53775 * 87.08592 * 89.11054 * 12 10 9 14 14 H 1.09004 * 113.61550 * 270.80064 * 13 12 10 15 15 N 1.46502 * 113.61228 * 139.97953 * 13 12 10 16 16 C 1.34777 * 119.99469 * 155.00697 * 15 13 12 17 17 O 1.21286 * 120.00439 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99871 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47311 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99995 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99827 * 359.97438 * 20 19 18 22 22 C 1.38791 * 120.00038 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99984 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00174 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47316 * 270.00077 * 24 22 20 26 26 H 1.48497 * 109.46844 * 30.00264 * 24 22 20 27 27 H 1.48503 * 109.46916 * 149.99976 * 24 22 20 28 28 C 1.53779 * 113.61085 * 252.49505 * 10 9 7 29 29 H 1.09003 * 109.46813 * 239.99980 * 1 2 3 30 30 H 1.08997 * 109.47338 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46706 * 120.00660 * 1 2 3 32 32 H 1.08996 * 109.47126 * 273.94126 * 3 2 1 33 33 H 1.09002 * 109.47364 * 33.94088 * 3 2 1 34 34 H 1.09003 * 109.47273 * 153.94228 * 3 2 1 35 35 H 1.08999 * 109.47560 * 175.68601 * 5 4 2 36 36 H 1.09005 * 109.47130 * 295.68709 * 5 4 2 37 37 H 1.09001 * 109.47372 * 55.68639 * 5 4 2 38 38 H 1.09000 * 109.47309 * 335.00751 * 6 4 2 39 39 H 1.08995 * 109.47343 * 214.99783 * 6 4 2 40 40 H 0.97002 * 120.00381 * 359.97438 * 9 7 6 41 41 H 1.09003 * 113.60883 * 334.55724 * 12 10 9 42 42 H 1.08994 * 113.68732 * 203.67523 * 12 10 9 43 43 H 0.96991 * 120.00409 * 334.99645 * 15 13 12 44 44 H 1.09000 * 109.47474 * 59.98785 * 18 16 15 45 45 H 1.09003 * 109.47160 * 299.99369 * 18 16 15 46 46 H 0.96997 * 120.00007 * 0.02562 * 23 22 20 47 47 H 1.08998 * 113.61903 * 156.33149 * 28 10 9 48 48 H 1.09000 * 113.61782 * 25.42555 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6632 -1.1378 0.1326 6 6 1.4144 -2.4363 -0.1309 7 6 1.3962 -2.8614 -1.5767 8 8 1.9367 -2.1745 -2.4175 9 7 0.7784 -4.0042 -1.9353 10 6 0.7612 -4.4177 -3.3407 11 1 1.5820 -3.9913 -3.9173 12 6 0.5944 -5.9341 -3.5347 13 6 -0.9236 -5.6880 -3.5331 14 1 -1.3716 -5.7291 -2.5402 15 7 -1.6496 -6.4929 -4.5186 16 6 -2.9517 -6.7819 -4.3249 17 8 -3.5223 -6.3760 -3.3346 18 6 -3.6984 -7.6105 -5.3383 19 16 -5.4127 -7.8237 -4.7981 20 6 -6.0336 -8.7987 -6.1280 21 1 -5.3825 -9.0765 -6.9437 22 6 -7.3593 -9.2097 -6.1272 23 7 -8.1526 -8.8715 -5.1327 24 14 -8.0177 -10.2427 -7.5374 25 1 -8.5541 -9.3505 -8.5963 26 1 -6.9207 -11.0721 -8.0977 27 1 -9.1018 -11.1269 -7.0392 28 6 -0.6132 -4.2601 -4.0123 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 2.3809 1.6550 -1.0252 33 1 1.7038 2.0460 0.5738 34 1 3.2417 1.1582 0.4514 35 1 4.0207 -2.1659 0.1900 36 1 4.1054 -0.6472 -0.7345 37 1 3.9495 -0.6026 1.0380 38 1 0.3915 -2.3051 0.2221 39 1 1.9096 -3.2017 0.4666 40 1 0.3457 -4.5534 -1.2629 41 1 0.9421 -6.5236 -2.6863 42 1 0.9767 -6.2982 -4.4882 43 1 -1.1933 -6.8178 -5.3104 44 1 -3.2228 -8.5868 -5.4309 45 1 -3.6817 -7.1052 -6.3040 46 1 -7.8108 -8.3348 -4.4006 47 1 -0.5609 -4.1652 -5.0969 48 1 -1.2405 -3.4982 -3.5496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720792117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:50 Heat of formation + Delta-G solvation = -60.602364 kcal Electronic energy + Delta-G solvation = -26166.549184 eV Core-core repulsion = 22347.878786 eV Total energy + Delta-G solvation = -3818.670398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77000 -39.58788 -38.27988 -37.18150 -34.23072 -32.68873 -32.54865 -31.32565 -29.90197 -29.23477 -27.02113 -26.06754 -25.00086 -24.59999 -23.83453 -21.30319 -20.54991 -19.89224 -18.34749 -17.60359 -17.31325 -16.62455 -16.55348 -16.08714 -15.96436 -15.13858 -14.97673 -14.74042 -14.64722 -14.38570 -14.08848 -13.87230 -13.64008 -13.36749 -13.08796 -13.04891 -12.85566 -12.72926 -12.53747 -12.44060 -12.37717 -12.33738 -12.11115 -12.03541 -11.82237 -11.62309 -11.12255 -11.06608 -10.92706 -10.84539 -10.20809 -10.18872 -9.61869 -9.54742 -9.38732 -9.04616 -8.95486 -8.77657 -8.25159 -6.69848 -6.64569 -4.02692 1.73119 2.34297 2.88018 2.90444 2.91124 3.33321 3.37659 3.52187 3.58270 4.09769 4.22680 4.25611 4.30352 4.51530 4.60061 4.65498 4.73025 4.74177 4.95021 4.97837 5.04743 5.15537 5.20221 5.23231 5.25838 5.32791 5.34730 5.39085 5.40737 5.48507 5.53850 5.56914 5.59660 5.65317 5.66984 5.72676 5.74591 5.76563 5.82726 5.98138 6.22722 6.31610 6.53383 6.66278 7.16282 7.57466 7.90083 7.93253 8.45803 8.47865 9.24669 10.79420 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.001645 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.938371 B =17016.308347 C =17631.308313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.107 4.107 7 C 0.520 3.480 8 O -0.530 6.530 9 N -0.717 5.717 10 C 0.124 3.876 11 H 0.107 0.893 12 C -0.153 4.153 13 C 0.126 3.874 14 H 0.113 0.887 15 N -0.727 5.727 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.132 4.132 19 S -0.116 6.116 20 C -0.608 4.608 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.087 2.913 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.280 1.280 28 C -0.164 4.164 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.402 0.598 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.400 0.600 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.278 0.722 47 H 0.094 0.906 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.264 13.527 9.356 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.123 4.123 3 C -0.173 4.173 4 C -0.122 4.122 5 C -0.164 4.164 6 C -0.146 4.146 7 C 0.307 3.693 8 O -0.406 6.406 9 N -0.368 5.368 10 C 0.018 3.982 11 H 0.125 0.875 12 C -0.192 4.192 13 C 0.020 3.980 14 H 0.131 0.869 15 N -0.380 5.380 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.283 4.283 19 S 0.110 5.890 20 C -0.756 4.756 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.913 3.087 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.205 1.205 28 C -0.204 4.204 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.237 0.763 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.234 0.766 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.337 13.954 9.860 28.923 hybrid contribution 1.988 -0.305 -0.903 2.204 sum 25.324 13.649 8.957 30.131 Atomic orbital electron populations 1.20847 0.92387 1.02565 1.01811 1.21396 0.95559 0.94741 1.00601 1.20863 0.99758 0.94600 1.02116 1.20739 0.95487 0.92697 1.03299 1.20721 0.92175 1.02019 1.01527 1.20731 1.02833 0.97329 0.93738 1.20609 0.77536 0.80274 0.90929 1.90707 1.44379 1.52739 1.52745 1.45748 1.57494 1.24788 1.08814 1.21640 0.98888 0.94982 0.82704 0.87458 1.23746 0.95862 0.95785 1.03773 1.22499 0.90612 0.90368 0.94476 0.86888 1.45947 1.10968 1.55601 1.25466 1.20338 0.81409 0.79522 0.86922 1.90693 1.67208 1.51970 1.29403 1.23330 1.02496 1.01738 1.00771 1.84813 1.00512 1.69984 1.33699 1.23734 1.01586 1.41054 1.09240 0.91566 1.26060 0.92206 0.97415 1.01833 1.70772 1.37976 1.33825 1.09263 0.83285 0.75716 0.75785 0.73887 1.21043 1.21300 1.20491 1.23960 0.96694 0.98052 1.01717 0.91435 0.91950 0.91783 0.91259 0.92144 0.91637 0.92524 0.91500 0.91754 0.88045 0.88383 0.76304 0.90132 0.88171 0.76575 0.88928 0.88934 0.90972 0.88751 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.61 36.01 0.31 -0.58 16 2 C -0.12 -1.01 6.04 -101.07 -0.61 -1.62 16 3 C -0.12 -0.80 9.62 36.00 0.35 -0.46 16 4 C -0.12 -0.99 4.54 -101.07 -0.46 -1.45 16 5 C -0.11 -0.77 8.67 36.00 0.31 -0.46 16 6 C -0.11 -0.74 5.39 -29.03 -0.16 -0.90 16 7 C 0.52 4.93 7.82 -10.98 -0.09 4.84 16 8 O -0.53 -7.08 15.63 5.56 0.09 -6.99 16 9 N -0.72 -5.57 5.26 -53.01 -0.28 -5.85 16 10 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 11 H 0.11 1.01 7.46 -51.93 -0.39 0.62 16 12 C -0.15 -1.09 7.58 -25.92 -0.20 -1.29 16 13 C 0.13 1.31 4.12 -67.12 -0.28 1.03 16 14 H 0.11 1.34 7.46 -51.93 -0.39 0.96 16 15 N -0.73 -8.92 5.35 -53.01 -0.28 -9.20 16 16 C 0.53 9.50 7.85 -10.99 -0.09 9.41 16 17 O -0.52 -11.29 15.46 5.55 0.09 -11.21 16 18 C -0.13 -2.61 6.16 36.01 0.22 -2.39 16 19 S -0.12 -3.11 19.60 -107.50 -2.11 -5.21 16 20 C -0.61 -17.45 9.50 30.94 0.29 -17.15 16 21 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 22 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.41 13.67 55.49 0.76 -26.65 16 24 Si 1.09 24.86 29.92 -169.99 -5.09 19.77 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C -0.16 -1.62 7.68 -25.92 -0.20 -1.82 16 29 H 0.07 0.42 7.61 -51.93 -0.40 0.03 16 30 H 0.06 0.42 7.99 -51.93 -0.41 0.01 16 31 H 0.06 0.55 7.95 -51.93 -0.41 0.14 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 6.21 -51.93 -0.32 0.07 16 35 H 0.06 0.37 7.98 -51.93 -0.41 -0.04 16 36 H 0.07 0.54 8.11 -51.93 -0.42 0.11 16 37 H 0.06 0.37 7.38 -51.93 -0.38 -0.01 16 38 H 0.10 0.59 6.26 -51.93 -0.33 0.27 16 39 H 0.10 0.48 8.11 -51.93 -0.42 0.06 16 40 H 0.40 2.30 8.70 -40.82 -0.36 1.94 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 43 H 0.40 3.73 8.73 -40.82 -0.36 3.37 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 46 H 0.28 8.79 7.12 -40.82 -0.29 8.50 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -37.14 409.58 -9.50 -46.64 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.87 Total: 3.68 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.97 Total: -11.15 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.20 Total: -41.70 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.20 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.14 -9.50 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.966 kcal (2) G-P(sol) polarization free energy of solvation -37.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds