Wall clock time and date at job start Sat Apr 11 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50694 * 119.99799 * 2 1 4 4 C 1.30999 * 120.00027 * 179.97438 * 2 1 3 5 5 C 1.50697 * 120.00000 * 185.81105 * 4 2 1 6 6 C 1.50699 * 120.00096 * 5.80308 * 4 2 1 7 7 C 1.50710 * 109.46691 * 95.00419 * 6 4 2 8 8 O 1.21281 * 119.99936 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99849 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99949 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84597 * 23.79513 * 10 9 7 12 12 C 1.53777 * 113.61642 * 155.00024 * 10 9 7 13 13 C 1.53775 * 87.08592 * 89.11054 * 12 10 9 14 14 H 1.09004 * 113.61550 * 270.80064 * 13 12 10 15 15 N 1.46502 * 113.61228 * 139.97953 * 13 12 10 16 16 C 1.34777 * 119.99469 * 155.00697 * 15 13 12 17 17 O 1.21286 * 120.00439 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99871 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47311 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99995 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99827 * 359.97438 * 20 19 18 22 22 C 1.38791 * 120.00038 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99984 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00174 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47316 * 270.00077 * 24 22 20 26 26 H 1.48497 * 109.46844 * 30.00264 * 24 22 20 27 27 H 1.48503 * 109.46916 * 149.99976 * 24 22 20 28 28 C 1.53779 * 113.61085 * 252.49505 * 10 9 7 29 29 H 1.09003 * 109.46813 * 239.99980 * 1 2 3 30 30 H 1.08997 * 109.47338 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46706 * 120.00660 * 1 2 3 32 32 H 1.08996 * 109.47126 * 273.94126 * 3 2 1 33 33 H 1.09002 * 109.47364 * 33.94088 * 3 2 1 34 34 H 1.09003 * 109.47273 * 153.94228 * 3 2 1 35 35 H 1.08999 * 109.47560 * 175.68601 * 5 4 2 36 36 H 1.09005 * 109.47130 * 295.68709 * 5 4 2 37 37 H 1.09001 * 109.47372 * 55.68639 * 5 4 2 38 38 H 1.09000 * 109.47309 * 335.00751 * 6 4 2 39 39 H 1.08995 * 109.47343 * 214.99783 * 6 4 2 40 40 H 0.97002 * 120.00381 * 359.97438 * 9 7 6 41 41 H 1.09003 * 113.60883 * 334.55724 * 12 10 9 42 42 H 1.08994 * 113.68732 * 203.67523 * 12 10 9 43 43 H 0.96991 * 120.00409 * 334.99645 * 15 13 12 44 44 H 1.09000 * 109.47474 * 59.98785 * 18 16 15 45 45 H 1.09003 * 109.47160 * 299.99369 * 18 16 15 46 46 H 0.96997 * 120.00007 * 0.02562 * 23 22 20 47 47 H 1.08998 * 113.61903 * 156.33149 * 28 10 9 48 48 H 1.09000 * 113.61782 * 25.42555 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6632 -1.1378 0.1326 6 6 1.4144 -2.4363 -0.1309 7 6 1.3962 -2.8614 -1.5767 8 8 1.9367 -2.1745 -2.4175 9 7 0.7784 -4.0042 -1.9353 10 6 0.7612 -4.4177 -3.3407 11 1 1.5820 -3.9913 -3.9173 12 6 0.5944 -5.9341 -3.5347 13 6 -0.9236 -5.6880 -3.5331 14 1 -1.3716 -5.7291 -2.5402 15 7 -1.6496 -6.4929 -4.5186 16 6 -2.9517 -6.7819 -4.3249 17 8 -3.5223 -6.3760 -3.3346 18 6 -3.6984 -7.6105 -5.3383 19 16 -5.4127 -7.8237 -4.7981 20 6 -6.0336 -8.7987 -6.1280 21 1 -5.3825 -9.0765 -6.9437 22 6 -7.3593 -9.2097 -6.1272 23 7 -8.1526 -8.8715 -5.1327 24 14 -8.0177 -10.2427 -7.5374 25 1 -8.5541 -9.3505 -8.5963 26 1 -6.9207 -11.0721 -8.0977 27 1 -9.1018 -11.1269 -7.0392 28 6 -0.6132 -4.2601 -4.0123 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 2.3809 1.6550 -1.0252 33 1 1.7038 2.0460 0.5738 34 1 3.2417 1.1582 0.4514 35 1 4.0207 -2.1659 0.1900 36 1 4.1054 -0.6472 -0.7345 37 1 3.9495 -0.6026 1.0380 38 1 0.3915 -2.3051 0.2221 39 1 1.9096 -3.2017 0.4666 40 1 0.3457 -4.5534 -1.2629 41 1 0.9421 -6.5236 -2.6863 42 1 0.9767 -6.2982 -4.4882 43 1 -1.1933 -6.8178 -5.3104 44 1 -3.2228 -8.5868 -5.4309 45 1 -3.6817 -7.1052 -6.3040 46 1 -7.8108 -8.3348 -4.4006 47 1 -0.5609 -4.1652 -5.0969 48 1 -1.2405 -3.4982 -3.5496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720792117.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:49 Heat of formation + Delta-G solvation = -86.290989 kcal Electronic energy + Delta-G solvation = -26167.663126 eV Core-core repulsion = 22347.878786 eV Total energy + Delta-G solvation = -3819.784340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60835 -40.63337 -39.29584 -37.86996 -35.25698 -34.74836 -33.67762 -31.94254 -30.86323 -30.31353 -27.62281 -27.10445 -26.78749 -25.46648 -24.55539 -22.09310 -21.80497 -20.75924 -20.34569 -18.38655 -18.02588 -17.92411 -17.55036 -16.86928 -16.70314 -16.50475 -16.36477 -15.72316 -15.65681 -15.43202 -15.15436 -15.02669 -14.72996 -14.47810 -14.32471 -14.03309 -14.00338 -13.65269 -13.58234 -13.41512 -13.29074 -13.12762 -13.00297 -12.87793 -12.74917 -12.63971 -12.18075 -11.95386 -11.94191 -11.70775 -11.62551 -11.51222 -11.10777 -11.04758 -10.95797 -10.32660 -10.20584 -10.00460 -9.37324 -8.92735 -8.86807 -6.27848 1.12114 1.21022 1.49529 1.52227 1.61371 1.61981 1.79667 2.21171 2.25975 2.34941 3.02257 3.13664 3.36188 3.51691 3.71956 3.82967 3.86659 3.94885 3.99411 4.05954 4.18123 4.19125 4.38209 4.39693 4.52910 4.53808 4.63471 4.67089 4.68394 4.76453 4.79490 4.84343 4.87096 4.96125 4.97515 4.99637 5.00046 5.10087 5.11837 5.18858 5.39443 5.59795 5.64368 5.74386 6.08023 6.14936 6.44565 6.52497 7.05989 7.16896 7.24284 8.50833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.001645 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.938371 B =17016.308347 C =17631.308313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C -0.117 4.117 4 C -0.133 4.133 5 C -0.106 4.106 6 C -0.105 4.105 7 C 0.518 3.482 8 O -0.574 6.574 9 N -0.709 5.709 10 C 0.127 3.873 11 H 0.102 0.898 12 C -0.127 4.127 13 C 0.116 3.884 14 H 0.097 0.903 15 N -0.699 5.699 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.112 4.112 19 S -0.196 6.196 20 C -0.614 4.614 21 H 0.075 0.925 22 C -0.019 4.019 23 N -0.913 5.913 24 Si 1.139 2.861 25 H -0.269 1.269 26 H -0.262 1.262 27 H -0.279 1.279 28 C -0.164 4.164 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.414 0.586 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.419 0.581 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.261 0.739 47 H 0.102 0.898 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.364 12.531 8.543 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C -0.173 4.173 4 C -0.134 4.134 5 C -0.163 4.163 6 C -0.144 4.144 7 C 0.306 3.694 8 O -0.452 6.452 9 N -0.361 5.361 10 C 0.021 3.979 11 H 0.120 0.880 12 C -0.166 4.166 13 C 0.011 3.989 14 H 0.116 0.884 15 N -0.352 5.352 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.263 4.263 19 S 0.030 5.970 20 C -0.762 4.762 21 H 0.093 0.907 22 C -0.222 4.222 23 N -0.549 5.549 24 Si 0.957 3.043 25 H -0.194 1.194 26 H -0.186 1.186 27 H -0.205 1.205 28 C -0.205 4.205 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.250 0.750 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.256 0.744 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 25.499 12.951 9.046 29.997 hybrid contribution 1.461 0.086 -0.638 1.596 sum 26.960 13.038 8.407 31.105 Atomic orbital electron populations 1.20843 0.92221 1.02820 1.01593 1.21646 0.95979 0.95399 1.00864 1.20876 1.00264 0.94377 1.01826 1.21005 0.96131 0.93205 1.03042 1.20724 0.91582 1.02439 1.01557 1.20783 1.03704 0.97580 0.92318 1.21046 0.76713 0.79997 0.91596 1.90689 1.46415 1.54065 1.54060 1.45722 1.56846 1.24491 1.09001 1.21569 0.97531 0.96020 0.82804 0.88016 1.23668 0.92364 0.94831 1.05705 1.22702 0.92396 0.90580 0.93232 0.88448 1.45713 1.08958 1.54271 1.26285 1.20038 0.82907 0.79253 0.85828 1.90686 1.68610 1.54000 1.31102 1.23252 0.97596 1.03637 1.01819 1.85046 1.06858 1.70195 1.34868 1.24069 1.02048 1.40624 1.09442 0.90673 1.27821 0.92940 0.97981 1.03472 1.70892 1.38622 1.35307 1.10057 0.82683 0.75907 0.74688 0.71048 1.19388 1.18637 1.20451 1.23975 0.97318 0.96930 1.02228 0.90195 0.91534 0.93364 0.92102 0.91205 0.90850 0.91964 0.92813 0.90405 0.86982 0.85876 0.74951 0.88501 0.85886 0.74368 0.86883 0.87153 0.92838 0.87991 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.61 71.24 0.61 -1.12 16 2 C -0.14 -2.21 6.04 -16.49 -0.10 -2.31 16 3 C -0.12 -1.57 9.62 71.23 0.69 -0.88 16 4 C -0.13 -2.06 4.54 -16.49 -0.07 -2.14 16 5 C -0.11 -1.42 8.67 71.23 0.62 -0.80 16 6 C -0.10 -1.31 5.39 29.10 0.16 -1.16 16 7 C 0.52 9.40 7.82 87.66 0.69 10.09 16 8 O -0.57 -15.27 15.63 -3.03 -0.05 -15.32 16 9 N -0.71 -10.01 5.26 -440.03 -2.32 -12.33 16 10 C 0.13 1.90 4.32 45.51 0.20 2.10 16 11 H 0.10 1.75 7.46 -2.39 -0.02 1.73 16 12 C -0.13 -1.39 7.58 31.12 0.24 -1.16 16 13 C 0.12 2.18 4.12 45.52 0.19 2.37 16 14 H 0.10 2.23 7.46 -2.38 -0.02 2.21 16 15 N -0.70 -15.51 5.35 -440.03 -2.36 -17.86 16 16 C 0.53 18.52 7.85 87.66 0.69 19.21 16 17 O -0.57 -24.94 15.46 -3.05 -0.05 -24.99 16 18 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 19 S -0.20 -10.67 19.60 -56.49 -1.11 -11.78 16 20 C -0.61 -35.15 9.50 67.95 0.65 -34.51 16 21 H 0.08 4.03 7.80 -2.91 -0.02 4.00 16 22 C -0.02 -1.10 5.49 84.85 0.47 -0.63 16 23 N -0.91 -57.80 13.67 21.65 0.30 -57.51 16 24 Si 1.14 48.99 29.92 68.60 2.05 51.05 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.16 -3.05 7.68 31.12 0.24 -2.81 16 29 H 0.08 0.93 7.61 -2.39 -0.02 0.92 16 30 H 0.07 0.89 7.99 -2.39 -0.02 0.87 16 31 H 0.05 0.85 7.95 -2.39 -0.02 0.83 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.07 0.83 6.21 -2.39 -0.01 0.82 16 35 H 0.06 0.73 7.98 -2.39 -0.02 0.72 16 36 H 0.05 0.85 8.11 -2.38 -0.02 0.83 16 37 H 0.08 0.79 7.38 -2.39 -0.02 0.78 16 38 H 0.11 1.16 6.26 -2.39 -0.01 1.15 16 39 H 0.12 0.91 8.11 -2.39 -0.02 0.89 16 40 H 0.41 3.99 8.70 -92.71 -0.81 3.19 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.12 0.88 8.12 -2.39 -0.02 0.86 16 43 H 0.42 6.27 8.73 -92.71 -0.81 5.46 16 44 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 45 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 46 H 0.26 17.15 7.12 -92.71 -0.66 16.49 16 47 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -83.84 409.58 1.63 -82.22 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.53 Total: 24.10 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 5.68 Total: -17.58 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -4.38 Total: -87.69 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.09 Total: -40.31 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.05 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.11 Total: -11.78 kcal Total: -83.84 1.63 -82.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720792117.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.073 kcal (2) G-P(sol) polarization free energy of solvation -83.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds