Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00196 * 2 1 4 4 C 1.53006 * 109.46948 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47358 * 239.99912 * 3 2 1 6 6 C 1.53000 * 109.46937 * 299.99890 * 5 3 2 7 7 C 1.50700 * 109.47568 * 119.99685 * 3 2 1 8 8 O 1.21278 * 119.99940 * 359.97438 * 7 3 2 9 9 N 1.34775 * 120.00060 * 180.02562 * 7 3 2 10 10 C 1.46506 * 120.00009 * 180.02562 * 9 7 3 11 11 H 1.08998 * 112.84621 * 26.90796 * 10 9 7 12 12 C 1.53780 * 113.61440 * 158.11023 * 10 9 7 13 13 C 1.53779 * 87.08249 * 89.11394 * 12 10 9 14 14 H 1.08999 * 113.61334 * 140.06347 * 13 12 10 15 15 N 1.46502 * 113.61260 * 270.87979 * 13 12 10 16 16 C 1.34773 * 120.00193 * 274.88279 * 15 13 12 17 17 O 1.21279 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.50695 * 119.99885 * 180.02562 * 16 15 13 19 19 S 1.81007 * 109.46976 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99793 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00366 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00391 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99916 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47410 * 59.99670 * 24 22 20 26 26 H 1.48495 * 109.47137 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46702 * 299.99973 * 24 22 20 28 28 C 1.53780 * 87.08236 * 25.43022 * 13 12 10 29 29 H 1.08000 * 119.99913 * 180.02562 * 1 2 3 30 30 H 1.08008 * 120.00125 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.00222 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47015 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47130 * 300.00267 * 4 3 2 34 34 H 1.09000 * 109.46826 * 60.00234 * 4 3 2 35 35 H 1.09006 * 109.46735 * 59.99462 * 5 3 2 36 36 H 1.08992 * 109.47505 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47000 * 299.99912 * 6 5 3 38 38 H 1.09000 * 109.47060 * 59.99349 * 6 5 3 39 39 H 1.08997 * 109.47452 * 180.02562 * 6 5 3 40 40 H 0.97000 * 120.00090 * 0.02562 * 9 7 3 41 41 H 1.09001 * 113.61193 * 334.56085 * 12 10 9 42 42 H 1.09007 * 113.61043 * 203.66705 * 12 10 9 43 43 H 0.97005 * 119.99663 * 94.89013 * 15 13 12 44 44 H 1.08998 * 109.47016 * 60.00415 * 18 16 15 45 45 H 1.08995 * 109.47349 * 299.99979 * 18 16 15 46 46 H 0.96998 * 120.00262 * 179.97438 * 23 22 20 47 47 H 1.09007 * 113.61393 * 89.11233 * 28 13 12 48 48 H 1.08996 * 113.61707 * 220.01653 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 3.9374 0.2232 -1.2492 7 6 2.9299 1.3850 1.2305 8 8 2.9346 0.4723 2.0291 9 7 3.6986 2.4712 1.4439 10 6 4.5413 2.5487 2.6399 11 1 4.8332 1.5682 3.0162 12 6 5.7166 3.5309 2.5028 13 6 4.7681 4.6177 3.0356 14 1 5.2433 5.3089 3.7317 15 7 4.0089 5.3005 1.9851 16 6 4.5522 6.3475 1.3332 17 8 5.6698 6.7241 1.6158 18 6 3.7710 7.0501 0.2530 19 16 4.7636 8.4024 -0.4270 20 6 3.6411 9.0303 -1.6313 21 1 2.6710 8.5723 -1.7560 22 6 4.0033 10.1143 -2.4189 23 7 5.1854 10.6729 -2.2665 24 14 2.8130 10.7806 -3.6952 25 1 1.5654 11.2257 -3.0239 26 1 3.4346 11.9310 -4.3989 27 1 2.4929 9.7141 -4.6778 28 6 3.9863 3.4868 3.7247 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5401 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6143 3.4120 -0.0002 33 1 0.4429 2.4101 -0.8908 34 1 0.4423 2.4105 0.8891 35 1 2.3164 1.3283 -2.1392 36 1 3.4878 2.3302 -1.2495 37 1 4.5640 0.2810 -0.3591 38 1 3.3924 -0.7208 -1.2491 39 1 4.5644 0.2811 -2.1388 40 1 3.6940 3.2017 0.8058 41 1 6.0318 3.6934 1.4720 42 1 6.5491 3.3116 3.1714 43 1 3.1150 4.9991 1.7588 44 1 2.8492 7.4517 0.6740 45 1 3.5301 6.3424 -0.5401 46 1 5.4386 11.4302 -2.8172 47 1 4.3458 3.2555 4.7275 48 1 2.9047 3.6138 3.6805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720816780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -39.895419 kcal Electronic energy + Delta-G solvation = -27952.913002 eV Core-core repulsion = 24135.140525 eV Total energy + Delta-G solvation = -3817.772477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11187 -39.81399 -38.11689 -36.69979 -33.90432 -32.86259 -32.47436 -32.18263 -29.78423 -29.13537 -26.03517 -25.67746 -25.49807 -24.33958 -23.01729 -21.60824 -20.35867 -19.95941 -18.72974 -17.88414 -17.11435 -16.74647 -16.28792 -16.06224 -15.77271 -15.45460 -15.15140 -14.84802 -14.76903 -14.55766 -14.27906 -14.01985 -13.57572 -13.28670 -12.96871 -12.83899 -12.73205 -12.60704 -12.54736 -12.26327 -12.19281 -12.06203 -11.98754 -11.56649 -11.24082 -11.10713 -11.09410 -11.07008 -10.83987 -10.81775 -10.57802 -10.03714 -9.87679 -9.59804 -9.49562 -9.31808 -9.10930 -8.96485 -8.30258 -6.55812 -6.26221 -3.97515 1.95824 2.39459 2.83195 2.95820 3.03977 3.19873 3.24303 3.26979 3.61438 4.15679 4.18951 4.20339 4.32518 4.37515 4.51423 4.58813 4.71175 4.90118 4.93646 5.02720 5.06976 5.09081 5.20550 5.24264 5.27554 5.41950 5.47036 5.51534 5.53105 5.56512 5.60264 5.67427 5.68373 5.73533 5.77241 5.80728 5.83473 5.86869 5.98986 6.03964 6.26219 6.33604 6.47025 6.60440 7.23940 7.54157 7.57452 7.97831 8.29983 8.50498 9.19056 10.81070 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.003010 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.204581 B = 9299.873383 C =10998.780295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.054 4.054 4 C -0.148 4.148 5 C -0.110 4.110 6 C -0.157 4.157 7 C 0.533 3.467 8 O -0.535 6.535 9 N -0.712 5.712 10 C 0.120 3.880 11 H 0.102 0.898 12 C -0.156 4.156 13 C 0.126 3.874 14 H 0.095 0.905 15 N -0.726 5.726 16 C 0.532 3.468 17 O -0.509 6.509 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.154 4.154 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.402 0.598 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.395 0.605 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.105 0.895 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -20.814 6.539 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.140 4.140 3 C -0.057 4.057 4 C -0.205 4.205 5 C -0.148 4.148 6 C -0.214 4.214 7 C 0.319 3.681 8 O -0.411 6.411 9 N -0.365 5.365 10 C 0.014 3.986 11 H 0.120 0.880 12 C -0.195 4.195 13 C 0.020 3.980 14 H 0.113 0.887 15 N -0.382 5.382 16 C 0.318 3.682 17 O -0.382 6.382 18 C -0.306 4.306 19 S 0.170 5.830 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.193 4.193 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.238 0.762 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.123 0.877 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.126 -20.683 7.530 22.600 hybrid contribution -2.478 0.242 -1.536 2.926 sum -7.605 -20.440 5.994 22.618 Atomic orbital electron populations 1.23983 0.95882 1.02291 1.00947 1.22473 0.95491 0.96580 0.99479 1.19993 0.95600 0.96121 0.93954 1.21989 0.98872 0.96258 1.03378 1.21594 0.97343 0.99824 0.96022 1.21847 0.99031 0.98387 1.02112 1.20412 0.79387 0.81526 0.86760 1.90686 1.65666 1.37808 1.46956 1.45853 1.44630 1.21105 1.24869 1.21915 0.91262 0.99672 0.85750 0.87956 1.23740 0.96938 0.95260 1.03587 1.21801 0.93195 0.93064 0.89960 0.88743 1.45896 1.19394 1.33731 1.39152 1.20348 0.86883 0.78936 0.81988 1.90717 1.19061 1.63754 1.64668 1.23551 1.03990 1.04036 0.99010 1.85433 1.21606 1.31241 1.44752 1.22818 1.03552 1.19393 1.22822 0.90970 1.24985 0.95772 0.95590 0.97139 1.70000 1.19200 1.22179 1.38854 0.86235 0.80360 0.78444 0.80539 1.19917 1.20792 1.19915 1.23728 1.01016 0.95316 0.99256 0.88270 0.87836 0.86785 0.91741 0.90606 0.91541 0.90304 0.91032 0.92748 0.92171 0.92082 0.76211 0.90141 0.87800 0.77045 0.89181 0.89325 0.92074 0.87686 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 13.70 29.02 0.40 -1.12 16 2 C -0.12 -1.09 7.29 -36.03 -0.26 -1.35 16 3 C -0.05 -0.46 0.63 -156.81 -0.10 -0.56 16 4 C -0.15 -1.07 7.02 37.16 0.26 -0.80 16 5 C -0.11 -0.87 4.88 -26.73 -0.13 -1.00 16 6 C -0.16 -1.30 9.41 37.16 0.35 -0.95 16 7 C 0.53 5.63 5.21 -10.99 -0.06 5.57 16 8 O -0.54 -7.47 15.67 5.56 0.09 -7.38 16 9 N -0.71 -6.55 4.75 -53.01 -0.25 -6.80 16 10 C 0.12 1.10 4.28 -67.11 -0.29 0.81 16 11 H 0.10 1.02 7.54 -51.93 -0.39 0.63 16 12 C -0.16 -1.52 7.61 -25.92 -0.20 -1.72 16 13 C 0.13 1.32 4.00 -67.12 -0.27 1.05 16 14 H 0.09 1.11 8.05 -51.93 -0.42 0.70 16 15 N -0.73 -8.56 4.33 -53.02 -0.23 -8.79 16 16 C 0.53 9.04 7.85 -10.99 -0.09 8.95 16 17 O -0.51 -10.77 15.80 5.56 0.09 -10.68 16 18 C -0.16 -2.89 6.16 36.00 0.22 -2.67 16 19 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 20 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 24 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 C -0.15 -1.28 7.57 -25.92 -0.20 -1.47 16 29 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.10 0.72 5.69 -52.48 -0.30 0.42 16 31 H 0.11 1.07 7.00 -52.49 -0.37 0.70 16 32 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 33 H 0.08 0.48 7.50 -51.93 -0.39 0.09 16 34 H 0.07 0.49 7.50 -51.93 -0.39 0.10 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.56 7.57 -51.93 -0.39 0.16 16 37 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 38 H 0.06 0.48 6.62 -51.93 -0.34 0.13 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 3.45 6.02 -40.82 -0.25 3.21 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.40 3.69 7.83 -40.82 -0.32 3.37 16 44 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 45 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -34.46 401.21 -8.59 -43.05 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.67 Total: 5.06 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.16 Total: -7.77 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.25 Total: -40.45 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.46 -8.59 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720816780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.157 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds