Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00196 * 2 1 4 4 C 1.53006 * 109.46948 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.47358 * 239.99912 * 3 2 1 6 6 C 1.53000 * 109.46937 * 299.99890 * 5 3 2 7 7 C 1.50700 * 109.47568 * 119.99685 * 3 2 1 8 8 O 1.21278 * 119.99940 * 359.97438 * 7 3 2 9 9 N 1.34775 * 120.00060 * 180.02562 * 7 3 2 10 10 C 1.46506 * 120.00009 * 180.02562 * 9 7 3 11 11 H 1.08998 * 112.84621 * 26.90796 * 10 9 7 12 12 C 1.53780 * 113.61440 * 158.11023 * 10 9 7 13 13 C 1.53779 * 87.08249 * 89.11394 * 12 10 9 14 14 H 1.08999 * 113.61334 * 140.06347 * 13 12 10 15 15 N 1.46502 * 113.61260 * 270.87979 * 13 12 10 16 16 C 1.34773 * 120.00193 * 274.88279 * 15 13 12 17 17 O 1.21279 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.50695 * 119.99885 * 180.02562 * 16 15 13 19 19 S 1.81007 * 109.46976 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99793 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00366 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00391 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99916 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47410 * 59.99670 * 24 22 20 26 26 H 1.48495 * 109.47137 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46702 * 299.99973 * 24 22 20 28 28 C 1.53780 * 87.08236 * 25.43022 * 13 12 10 29 29 H 1.08000 * 119.99913 * 180.02562 * 1 2 3 30 30 H 1.08008 * 120.00125 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.00222 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47015 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47130 * 300.00267 * 4 3 2 34 34 H 1.09000 * 109.46826 * 60.00234 * 4 3 2 35 35 H 1.09006 * 109.46735 * 59.99462 * 5 3 2 36 36 H 1.08992 * 109.47505 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47000 * 299.99912 * 6 5 3 38 38 H 1.09000 * 109.47060 * 59.99349 * 6 5 3 39 39 H 1.08997 * 109.47452 * 180.02562 * 6 5 3 40 40 H 0.97000 * 120.00090 * 0.02562 * 9 7 3 41 41 H 1.09001 * 113.61193 * 334.56085 * 12 10 9 42 42 H 1.09007 * 113.61043 * 203.66705 * 12 10 9 43 43 H 0.97005 * 119.99663 * 94.89013 * 15 13 12 44 44 H 1.08998 * 109.47016 * 60.00415 * 18 16 15 45 45 H 1.08995 * 109.47349 * 299.99979 * 18 16 15 46 46 H 0.96998 * 120.00262 * 179.97438 * 23 22 20 47 47 H 1.09007 * 113.61393 * 89.11233 * 28 13 12 48 48 H 1.08996 * 113.61707 * 220.01653 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 3.9374 0.2232 -1.2492 7 6 2.9299 1.3850 1.2305 8 8 2.9346 0.4723 2.0291 9 7 3.6986 2.4712 1.4439 10 6 4.5413 2.5487 2.6399 11 1 4.8332 1.5682 3.0162 12 6 5.7166 3.5309 2.5028 13 6 4.7681 4.6177 3.0356 14 1 5.2433 5.3089 3.7317 15 7 4.0089 5.3005 1.9851 16 6 4.5522 6.3475 1.3332 17 8 5.6698 6.7241 1.6158 18 6 3.7710 7.0501 0.2530 19 16 4.7636 8.4024 -0.4270 20 6 3.6411 9.0303 -1.6313 21 1 2.6710 8.5723 -1.7560 22 6 4.0033 10.1143 -2.4189 23 7 5.1854 10.6729 -2.2665 24 14 2.8130 10.7806 -3.6952 25 1 1.5654 11.2257 -3.0239 26 1 3.4346 11.9310 -4.3989 27 1 2.4929 9.7141 -4.6778 28 6 3.9863 3.4868 3.7247 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5401 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6143 3.4120 -0.0002 33 1 0.4429 2.4101 -0.8908 34 1 0.4423 2.4105 0.8891 35 1 2.3164 1.3283 -2.1392 36 1 3.4878 2.3302 -1.2495 37 1 4.5640 0.2810 -0.3591 38 1 3.3924 -0.7208 -1.2491 39 1 4.5644 0.2811 -2.1388 40 1 3.6940 3.2017 0.8058 41 1 6.0318 3.6934 1.4720 42 1 6.5491 3.3116 3.1714 43 1 3.1150 4.9991 1.7588 44 1 2.8492 7.4517 0.6740 45 1 3.5301 6.3424 -0.5401 46 1 5.4386 11.4302 -2.8172 47 1 4.3458 3.2555 4.7275 48 1 2.9047 3.6138 3.6805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720816780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -62.591816 kcal Electronic energy + Delta-G solvation = -27953.897192 eV Core-core repulsion = 24135.140525 eV Total energy + Delta-G solvation = -3818.756667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96289 -40.81702 -39.23966 -37.48469 -34.89757 -34.55591 -33.86856 -32.86920 -30.70039 -30.26684 -27.65340 -26.79991 -26.32434 -25.16260 -23.72585 -22.49664 -21.48158 -20.84376 -19.77571 -19.46565 -17.98470 -17.67533 -17.40048 -17.12777 -16.85157 -16.63130 -16.43369 -16.08143 -15.79247 -15.67280 -15.36157 -14.97120 -14.70879 -14.48215 -14.27836 -13.78842 -13.58093 -13.50643 -13.24757 -13.23091 -13.13960 -12.97037 -12.89382 -12.84684 -12.69504 -12.59300 -12.22955 -12.05452 -11.82477 -11.73942 -11.48174 -11.39805 -11.10425 -10.91625 -10.82392 -10.28953 -10.23985 -10.18672 -9.99704 -8.63274 -8.32219 -6.09573 1.28165 1.31753 1.45493 1.48763 1.57307 1.58712 1.61486 2.11933 2.29304 2.34289 3.02295 3.33594 3.39138 3.54105 3.57596 3.68461 3.79544 3.89963 4.00772 4.04718 4.11142 4.29698 4.33211 4.39518 4.53017 4.60735 4.63258 4.67932 4.72796 4.74986 4.79904 4.85309 4.91690 4.98145 5.00665 5.02368 5.05290 5.14024 5.23947 5.34182 5.38562 5.44533 5.65501 5.71680 5.84224 6.22065 6.43768 6.48846 7.09594 7.18275 7.23971 8.76486 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.003010 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.204581 B = 9299.873383 C =10998.780295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C -0.049 4.049 4 C -0.149 4.149 5 C -0.109 4.109 6 C -0.155 4.155 7 C 0.533 3.467 8 O -0.572 6.572 9 N -0.706 5.706 10 C 0.119 3.881 11 H 0.097 0.903 12 C -0.151 4.151 13 C 0.116 3.884 14 H 0.084 0.916 15 N -0.700 5.700 16 C 0.537 3.463 17 O -0.557 6.557 18 C -0.132 4.132 19 S -0.149 6.149 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.995 3.005 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.260 1.260 28 C -0.134 4.134 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.405 0.595 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.411 0.589 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 -21.622 6.240 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.160 4.160 3 C -0.052 4.052 4 C -0.206 4.206 5 C -0.147 4.147 6 C -0.213 4.213 7 C 0.321 3.679 8 O -0.451 6.451 9 N -0.358 5.358 10 C 0.014 3.986 11 H 0.115 0.885 12 C -0.190 4.190 13 C 0.010 3.990 14 H 0.102 0.898 15 N -0.355 5.355 16 C 0.324 3.676 17 O -0.434 6.434 18 C -0.283 4.283 19 S 0.078 5.922 20 C -0.693 4.693 21 H 0.103 0.897 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.185 1.185 28 C -0.173 4.173 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.242 0.758 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.248 0.752 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.696 -21.522 7.242 23.976 hybrid contribution -1.691 0.359 -1.349 2.193 sum -9.387 -21.163 5.893 23.890 Atomic orbital electron populations 1.24174 0.95535 1.03280 0.99233 1.22492 0.96014 0.96430 1.01091 1.19983 0.95607 0.96650 0.92989 1.22033 0.98723 0.95845 1.03985 1.21615 0.97285 0.99516 0.96249 1.21831 0.99065 0.98852 1.01518 1.20796 0.79236 0.80995 0.86913 1.90668 1.66984 1.39068 1.48386 1.45827 1.44122 1.20911 1.24893 1.21923 0.91145 0.99450 0.86125 0.88498 1.23744 0.97559 0.94941 1.02787 1.21980 0.94062 0.93326 0.89599 0.89751 1.45588 1.19876 1.31853 1.38174 1.20059 0.86059 0.79690 0.81839 1.90710 1.21046 1.65497 1.66138 1.23398 1.03085 1.01738 1.00089 1.85625 1.25167 1.35463 1.45943 1.23182 1.03848 1.19561 1.22711 0.89715 1.26088 0.97581 0.95892 0.99490 1.70173 1.21531 1.22895 1.40256 0.85053 0.77867 0.77819 0.77585 1.18703 1.20727 1.18498 1.23688 1.01037 0.92865 0.99731 0.87461 0.86684 0.87934 0.90905 0.89422 0.91530 0.89122 0.90857 0.94449 0.92121 0.91484 0.75760 0.92021 0.86240 0.75173 0.87272 0.86720 0.92086 0.85568 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 13.70 67.79 0.93 -1.62 16 2 C -0.14 -2.37 7.29 25.65 0.19 -2.19 16 3 C -0.05 -0.76 0.63 -53.67 -0.03 -0.80 16 4 C -0.15 -1.74 7.02 71.98 0.51 -1.23 16 5 C -0.11 -1.55 4.88 30.59 0.15 -1.40 16 6 C -0.16 -2.49 9.41 71.98 0.68 -1.81 16 7 C 0.53 10.64 5.21 87.66 0.46 11.09 16 8 O -0.57 -15.66 15.67 -3.02 -0.05 -15.70 16 9 N -0.71 -11.87 4.75 -440.03 -2.09 -13.96 16 10 C 0.12 2.00 4.28 45.52 0.19 2.19 16 11 H 0.10 1.82 7.54 -2.39 -0.02 1.80 16 12 C -0.15 -2.77 7.61 31.12 0.24 -2.53 16 13 C 0.12 2.24 4.00 45.52 0.18 2.42 16 14 H 0.08 1.89 8.05 -2.39 -0.02 1.87 16 15 N -0.70 -15.11 4.33 -440.05 -1.91 -17.02 16 16 C 0.54 17.73 7.85 87.66 0.69 18.42 16 17 O -0.56 -23.84 15.80 -3.03 -0.05 -23.89 16 18 C -0.13 -4.71 6.16 71.23 0.44 -4.28 16 19 S -0.15 -7.87 20.57 -56.49 -1.16 -9.04 16 20 C -0.55 -29.81 9.50 67.95 0.65 -29.16 16 21 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -54.83 13.22 21.65 0.29 -54.54 16 24 Si 0.99 42.15 29.55 68.60 2.03 44.17 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 28 C -0.13 -1.88 7.57 31.12 0.24 -1.65 16 29 H 0.11 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.12 1.29 5.69 -2.91 -0.02 1.28 16 31 H 0.10 1.91 7.00 -2.91 -0.02 1.89 16 32 H 0.07 0.72 7.56 -2.38 -0.02 0.70 16 33 H 0.09 0.84 7.50 -2.39 -0.02 0.82 16 34 H 0.07 0.79 7.50 -2.39 -0.02 0.77 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.01 7.57 -2.39 -0.02 0.99 16 37 H 0.04 0.71 7.22 -2.39 -0.02 0.70 16 38 H 0.06 0.95 6.62 -2.39 -0.02 0.93 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.41 6.16 6.02 -92.71 -0.56 5.60 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.41 6.43 7.83 -92.70 -0.73 5.70 16 44 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 45 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 46 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 47 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 Total: -1.00 -77.06 401.21 2.70 -74.36 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.31 Total: 26.91 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 5.96 Total: -11.29 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -3.71 Total: -85.52 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.10 Total: -39.59 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.04 kcal Total: -77.06 2.70 -74.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720816780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.766 kcal (2) G-P(sol) polarization free energy of solvation -77.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds