Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50696 * 119.99529 * 2 1 4 4 C 1.52998 * 109.46969 * 125.00256 * 3 2 1 5 5 C 1.50706 * 109.47348 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00081 * 179.72561 * 5 4 3 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46710 * 275.00042 * 8 7 5 10 10 C 1.52996 * 109.46873 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47356 * 59.99539 * 10 9 8 12 12 N 1.46506 * 109.47201 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00208 * 275.00056 * 12 11 10 14 14 O 1.21282 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00005 * 179.97438 * 13 12 11 16 16 S 1.81006 * 109.47315 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00036 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99954 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47234 * 89.99702 * 21 19 17 23 23 H 1.48503 * 109.47162 * 209.99928 * 21 19 17 24 24 H 1.48500 * 109.47015 * 329.99980 * 21 19 17 25 25 C 1.53000 * 109.47175 * 299.99891 * 11 10 9 26 26 C 1.52995 * 109.47011 * 154.99680 * 8 7 5 27 27 H 1.08001 * 119.99570 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99785 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99785 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47664 * 5.00184 * 3 2 1 31 31 H 1.09002 * 109.46824 * 244.99655 * 3 2 1 32 32 H 1.09001 * 109.47671 * 59.99812 * 4 3 2 33 33 H 1.08998 * 109.47454 * 299.99809 * 4 3 2 34 34 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 35 35 H 1.08995 * 109.47035 * 34.99295 * 8 7 5 36 36 H 1.09001 * 109.47185 * 299.99552 * 9 8 7 37 37 H 1.08996 * 109.47804 * 59.99502 * 9 8 7 38 38 H 1.08999 * 109.47373 * 299.99256 * 10 9 8 39 39 H 1.09001 * 109.47321 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.47035 * 60.00333 * 11 10 9 41 41 H 0.97004 * 119.99366 * 94.99963 * 12 11 10 42 42 H 1.08997 * 109.47787 * 300.00404 * 15 13 12 43 43 H 1.09000 * 109.47007 * 60.00470 * 15 13 12 44 44 H 0.96997 * 120.00225 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.47077 * 300.00290 * 25 11 10 46 46 H 1.09001 * 109.46907 * 179.97438 * 25 11 10 47 47 H 1.08998 * 109.47477 * 299.99585 * 26 8 7 48 48 H 1.09001 * 109.47216 * 60.00245 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6381 1.1813 6 8 3.5709 3.4641 0.3204 7 7 4.7017 2.8891 2.1405 8 6 5.4342 4.1579 2.1405 9 6 6.6499 4.0449 1.2185 10 6 7.4153 5.3697 1.2190 11 6 7.8814 5.6889 2.6408 12 7 8.6148 6.9572 2.6411 13 6 9.9293 6.9756 2.3446 14 8 10.5053 5.9421 2.0778 15 6 10.6835 8.2802 2.3443 16 16 12.4143 7.9766 1.9100 17 6 13.0415 9.6216 1.9843 18 1 12.3844 10.4388 2.2423 19 6 14.3801 9.8669 1.7112 20 7 15.1811 8.8706 1.3972 21 14 15.0452 11.6106 1.7907 22 1 15.5304 11.8932 3.1654 23 1 16.1679 11.7564 0.8296 24 1 13.9659 12.5685 1.4401 25 6 6.6657 5.8020 3.5628 26 6 5.9003 4.4777 3.5623 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5066 1.0921 33 1 2.4773 1.2356 2.1130 34 1 4.8733 2.2302 2.8313 35 1 4.7811 4.9545 1.7845 36 1 7.3032 3.2483 1.5745 37 1 6.3179 3.8170 0.2056 38 1 6.7624 6.1667 0.8631 39 1 8.2816 5.2891 0.5624 40 1 8.5344 4.8920 2.9966 41 1 8.1541 7.7837 2.8548 42 1 10.2394 8.9567 1.6141 43 1 10.6310 8.7304 3.3356 44 1 16.1166 9.0419 1.2068 45 1 6.0127 6.5989 3.2070 46 1 6.9978 6.0290 4.5758 47 1 5.0342 4.5582 4.2191 48 1 6.5536 3.6811 3.9183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720890199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = -85.587048 kcal Electronic energy + Delta-G solvation = -26065.536200 eV Core-core repulsion = 22245.782385 eV Total energy + Delta-G solvation = -3819.753815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51106 -39.52225 -37.95934 -35.83596 -34.97175 -33.07318 -32.42227 -31.24769 -31.08945 -29.73734 -27.73358 -25.48377 -24.83524 -23.11331 -22.31196 -20.73794 -20.33296 -20.23734 -20.04556 -17.85902 -17.33491 -16.77064 -16.28596 -16.25678 -16.14157 -15.33032 -15.01996 -14.80043 -14.57680 -14.49636 -14.14961 -14.06569 -13.74760 -13.33998 -13.21491 -12.99541 -12.79059 -12.66568 -12.55315 -12.48118 -12.06582 -11.81249 -11.54006 -11.51505 -11.46268 -11.41089 -11.06009 -11.01933 -10.76968 -10.70028 -10.65998 -10.18860 -9.80730 -9.76780 -9.39002 -9.32993 -9.06427 -8.85242 -8.22951 -6.49282 -6.21251 -3.91657 1.80466 2.31910 2.79607 3.05615 3.10886 3.22667 3.28459 3.32891 3.72192 4.21037 4.23348 4.36142 4.40505 4.44790 4.62832 4.78539 4.80760 4.84408 4.86122 4.95996 5.08515 5.12979 5.13973 5.16537 5.21024 5.25640 5.37601 5.44974 5.47350 5.52288 5.63384 5.70631 5.71212 5.77213 5.85035 5.90246 5.99483 6.11592 6.15328 6.15953 6.18209 6.26549 6.31082 6.68797 7.14413 7.60056 7.73864 7.90000 8.35699 8.63705 9.24154 10.86202 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.001520 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.298901 B =18419.927069 C =18647.724557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.538 6.538 7 N -0.729 5.729 8 C 0.143 3.857 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.146 3.854 12 N -0.736 5.736 13 C 0.533 3.467 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.122 4.122 26 C -0.121 4.121 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.463 -15.034 4.402 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.118 4.118 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.415 6.415 7 N -0.380 5.380 8 C 0.039 3.961 9 C -0.164 4.164 10 C -0.167 4.167 11 C 0.041 3.959 12 N -0.389 5.389 13 C 0.319 3.681 14 O -0.391 6.391 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.161 4.161 26 C -0.159 4.159 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.464 -16.212 3.279 32.060 hybrid contribution -0.312 2.335 0.803 2.489 sum -27.776 -13.877 4.081 31.317 Atomic orbital electron populations 1.23901 0.96003 1.01945 1.01079 1.22976 0.96100 0.98347 0.99972 1.20506 0.97798 0.95434 0.98038 1.21636 0.99098 0.95635 1.01280 1.20752 0.79378 0.89005 0.81090 1.90727 1.65729 1.48104 1.36924 1.46131 1.41107 1.20258 1.30469 1.21067 0.93187 0.86149 0.95744 1.21858 0.96067 0.98146 1.00281 1.21896 1.00448 0.96885 0.97466 1.20918 0.92531 0.87497 0.94988 1.46070 1.09746 1.09805 1.73285 1.20305 0.81238 0.91053 0.75510 1.90695 1.67767 1.34328 1.46353 1.23540 1.04639 0.97192 1.05112 1.85385 0.95069 1.12634 1.90294 1.22873 0.97535 0.93200 1.54791 0.90945 1.24987 0.95786 0.98252 0.94511 1.70019 1.05526 1.31035 1.43738 0.86173 0.78554 0.82692 0.78116 1.20274 1.20743 1.19696 1.21729 0.96394 0.97530 1.00415 1.21721 1.00367 0.98185 0.95675 0.88475 0.88509 0.87292 0.90725 0.90116 0.88700 0.88828 0.76629 0.89302 0.91471 0.91232 0.91631 0.90620 0.89375 0.76902 0.89250 0.89270 0.92193 0.91067 0.90570 0.90897 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 14.32 29.01 0.42 -0.58 16 2 C -0.16 -0.83 9.52 -36.03 -0.34 -1.18 16 3 C -0.08 -0.52 4.95 -27.89 -0.14 -0.66 16 4 C -0.14 -0.70 5.68 -27.88 -0.16 -0.86 16 5 C 0.51 4.26 7.79 -10.98 -0.09 4.18 16 6 O -0.54 -6.83 15.64 5.56 0.09 -6.74 16 7 N -0.73 -4.72 5.08 -53.80 -0.27 -5.00 16 8 C 0.14 1.13 2.46 -67.93 -0.17 0.97 16 9 C -0.12 -1.22 5.49 -26.73 -0.15 -1.37 16 10 C -0.13 -1.46 5.49 -26.73 -0.15 -1.60 16 11 C 0.15 1.62 2.45 -67.93 -0.17 1.46 16 12 N -0.74 -9.52 5.08 -53.81 -0.27 -9.79 16 13 C 0.53 9.79 7.81 -10.99 -0.09 9.70 16 14 O -0.52 -11.56 15.52 5.56 0.09 -11.47 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.87 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.12 -0.93 5.39 -26.75 -0.14 -1.07 16 26 C -0.12 -0.76 5.39 -26.76 -0.14 -0.90 16 27 H 0.10 0.40 8.06 -52.49 -0.42 -0.02 16 28 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 29 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 31 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.40 1.46 8.60 -40.82 -0.35 1.10 16 35 H 0.09 0.87 7.57 -51.93 -0.39 0.47 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 41 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 409.87 15.07 6.18 6.18 Total: -1.00 -36.37 409.87 -9.78 -46.15 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.19 Total: 1.39 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.89 Total: -7.78 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.19 Total: -40.28 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.17 Total: -18.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.37 -9.78 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720890199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.437 kcal (2) G-P(sol) polarization free energy of solvation -36.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds