Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47416 * 2 1 4 4 C 1.53000 * 109.47091 * 120.00220 * 2 1 3 5 5 H 1.08999 * 115.54819 * 325.66818 * 4 2 1 6 6 C 1.52997 * 117.50204 * 111.38020 * 4 2 1 7 7 C 1.52992 * 60.00348 * 107.49057 * 6 4 2 8 8 H 1.09003 * 117.51727 * 252.52631 * 7 6 4 9 9 C 1.50693 * 117.50174 * 107.49037 * 7 6 4 10 10 O 1.21284 * 120.00310 * 291.38240 * 9 7 6 11 11 N 1.34780 * 120.00205 * 111.37711 * 9 7 6 12 12 C 1.47579 * 134.49439 * 180.02562 * 11 9 7 13 13 C 1.53950 * 86.11621 * 204.63969 * 12 11 9 14 14 C 1.53004 * 113.73988 * 221.94050 * 13 12 11 15 15 N 1.46501 * 109.46877 * 183.07251 * 14 13 12 16 16 C 1.34779 * 119.99823 * 180.02562 * 15 14 13 17 17 O 1.21275 * 119.99833 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99677 * 180.02562 * 16 15 14 19 19 S 1.81003 * 109.46720 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99827 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99992 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00057 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00053 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99933 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47325 * 89.99565 * 24 22 20 26 26 H 1.48497 * 109.46898 * 210.00176 * 24 22 20 27 27 H 1.48504 * 109.46900 * 329.99643 * 24 22 20 28 28 C 1.47925 * 134.49772 * 0.02562 * 11 9 7 29 29 H 1.08998 * 109.47173 * 299.99814 * 1 2 3 30 30 H 1.08998 * 109.46667 * 60.00337 * 1 2 3 31 31 H 1.09006 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47173 * 240.00185 * 2 1 3 33 33 H 1.08992 * 109.47642 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47262 * 300.00387 * 3 2 1 35 35 H 1.09011 * 109.47116 * 59.99981 * 3 2 1 36 36 H 1.09004 * 117.50006 * 359.97438 * 6 4 2 37 37 H 1.09003 * 117.49675 * 214.98224 * 6 4 2 38 38 H 1.09003 * 113.77049 * 90.34034 * 12 11 9 39 39 H 1.08993 * 113.77081 * 318.93795 * 12 11 9 40 40 H 1.09002 * 113.74276 * 90.74001 * 13 12 11 41 41 H 1.08998 * 109.46823 * 303.07465 * 14 13 12 42 42 H 1.08998 * 109.46745 * 63.07477 * 14 13 12 43 43 H 0.97000 * 119.99767 * 0.02562 * 15 14 13 44 44 H 1.09002 * 109.46960 * 299.99752 * 18 16 15 45 45 H 1.08997 * 109.47295 * 59.99878 * 18 16 15 46 46 H 0.96997 * 120.00209 * 179.97438 * 23 22 20 47 47 H 1.09006 * 113.87423 * 41.10256 * 28 11 9 48 48 H 1.08997 * 113.77410 * 269.60428 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.4311 -0.5980 2.1448 6 6 2.7419 -2.0663 1.0514 7 6 3.5550 -0.8282 1.4343 8 1 4.1884 -0.3842 0.6663 9 6 4.0910 -0.7553 2.8408 10 8 3.3287 -0.6170 3.7740 11 7 5.4176 -0.8440 3.0619 12 6 6.2697 -0.8138 4.2665 13 6 7.3951 -0.3367 3.3307 14 6 8.7491 -0.9916 3.6117 15 7 9.7623 -0.4196 2.7215 16 6 11.0384 -0.8479 2.7898 17 8 11.3479 -1.7064 3.5885 18 6 12.0808 -0.2590 1.8745 19 16 13.6822 -1.0350 2.2058 20 6 14.6830 -0.1846 1.0312 21 1 14.2431 0.5625 0.3871 22 6 16.0368 -0.4748 0.9336 23 7 16.7844 0.1601 0.0557 24 14 16.7976 -1.7674 2.0470 25 1 16.7190 -3.0962 1.3887 26 1 18.2197 -1.4251 2.3031 27 1 16.0588 -1.8085 3.3346 28 6 6.6044 -1.0108 2.1948 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.8401 -2.4375 0.0312 37 1 2.5946 -2.8282 1.8168 38 1 6.4484 -1.7965 4.7031 39 1 5.9647 -0.0694 5.0019 40 1 7.4587 0.7475 3.2379 41 1 9.0321 -0.8102 4.6485 42 1 8.6765 -2.0651 3.4373 43 1 9.5147 0.2674 2.0830 44 1 11.7976 -0.4396 0.8375 45 1 12.1536 0.8143 2.0496 46 1 17.7306 -0.0424 -0.0123 47 1 6.5664 -0.4234 1.2773 48 1 6.8812 -2.0511 2.0240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721382003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = -29.775706 kcal Electronic energy + Delta-G solvation = -25872.113855 eV Core-core repulsion = 22054.780201 eV Total energy + Delta-G solvation = -3817.333654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94456 -39.58524 -38.87519 -37.40179 -34.62556 -33.76974 -32.46686 -31.18008 -29.36065 -27.63453 -26.87453 -26.29941 -25.60445 -23.91763 -23.29416 -21.16576 -20.50158 -20.20373 -19.29166 -17.96034 -17.60835 -16.74702 -16.57930 -16.39791 -15.65304 -15.46317 -15.28000 -14.99636 -14.84073 -14.40413 -14.08547 -13.79103 -13.61349 -13.55421 -13.27579 -13.16870 -13.00086 -12.93336 -12.81506 -12.62089 -12.46109 -11.94611 -11.78463 -11.75420 -11.62393 -11.31793 -11.27297 -11.14060 -11.03189 -10.72513 -10.64042 -10.53475 -10.11202 -9.88285 -9.59850 -9.14231 -9.08908 -9.01644 -8.53550 -6.95152 -6.31585 -4.03715 2.10841 2.29089 2.70882 2.90881 3.22429 3.31214 3.35655 3.48268 3.56969 3.82599 3.90395 4.21720 4.27345 4.30636 4.35112 4.46929 4.56409 4.61039 4.68106 4.77411 4.79996 4.84955 4.92350 5.00646 5.07588 5.10534 5.14234 5.20028 5.22535 5.22594 5.31635 5.38719 5.42443 5.43904 5.54367 5.56440 5.64653 5.68596 5.72243 5.78196 5.82944 5.96202 5.96822 6.41705 7.24386 7.51510 7.78048 7.91336 8.38657 8.41607 9.14593 10.77594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.001621 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.174947 B =17272.916744 C =18051.957895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.111 4.111 5 H 0.117 0.883 6 C -0.147 4.147 7 C -0.185 4.185 8 H 0.122 0.878 9 C 0.567 3.433 10 O -0.542 6.542 11 N -0.644 5.644 12 C 0.118 3.882 13 C -0.135 4.135 14 C 0.131 3.869 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.107 3.893 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.086 0.914 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.135 0.023 0.285 31.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.204 4.204 4 C -0.130 4.130 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.206 4.206 8 H 0.140 0.860 9 C 0.357 3.643 10 O -0.419 6.419 11 N -0.379 5.379 12 C -0.005 4.005 13 C -0.154 4.154 14 C 0.006 3.994 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.016 4.016 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.234 0.766 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -31.074 -1.295 2.011 31.166 hybrid contribution 0.257 0.860 -1.024 1.362 sum -30.817 -0.435 0.988 30.836 Atomic orbital electron populations 1.21805 0.94461 1.01973 1.01985 1.20754 0.96124 0.96063 0.95626 1.21826 1.01073 0.95564 1.01950 1.22504 0.91674 0.98378 1.00436 0.86477 1.23101 1.01438 0.90872 1.03061 1.22174 0.96283 1.06644 0.95491 0.86001 1.19355 0.79849 0.75266 0.89844 1.90706 1.55973 1.50102 1.45105 1.49972 1.04278 1.72710 1.10980 1.23126 0.85409 1.02071 0.89878 1.23440 0.93473 1.01835 0.96694 1.21220 0.85141 0.97897 0.95137 1.45932 1.08387 1.43824 1.41042 1.20290 0.82335 0.81969 0.83732 1.90709 1.80201 1.30827 1.37531 1.23280 0.98346 1.04248 1.01637 1.84807 0.99339 1.54903 1.52524 1.22315 0.96035 1.26511 1.22146 0.89378 1.24710 0.95980 0.95743 0.94835 1.69933 1.06902 1.40889 1.33910 0.86736 0.79773 0.82109 0.83240 1.19208 1.19926 1.15925 1.23465 0.81147 1.01490 0.95466 0.92438 0.92451 0.92460 0.90944 0.92690 0.92487 0.92429 0.87637 0.88316 0.89110 0.89520 0.87101 0.90745 0.90942 0.76587 0.88470 0.88427 0.91922 0.89589 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.18 37.16 0.34 -0.38 16 2 C -0.07 -0.37 3.07 -90.62 -0.28 -0.65 16 3 C -0.15 -0.83 9.03 37.16 0.34 -0.49 16 4 C -0.11 -0.78 4.66 -90.62 -0.42 -1.21 16 5 H 0.12 1.03 7.64 -51.93 -0.40 0.64 16 6 C -0.15 -0.93 9.88 -26.74 -0.26 -1.19 16 7 C -0.18 -1.37 5.15 -91.78 -0.47 -1.84 16 8 H 0.12 0.72 7.61 -51.93 -0.39 0.33 16 9 C 0.57 5.83 7.84 -10.99 -0.09 5.74 16 10 O -0.54 -7.64 16.99 5.55 0.09 -7.54 16 11 N -0.64 -5.29 3.62 -178.05 -0.64 -5.94 16 12 C 0.12 0.83 8.40 -2.97 -0.02 0.81 16 13 C -0.14 -0.79 3.93 -89.69 -0.35 -1.15 16 14 C 0.13 1.11 5.51 -4.04 -0.02 1.09 16 15 N -0.74 -7.68 5.56 -60.29 -0.33 -8.02 16 16 C 0.53 8.57 7.85 -10.98 -0.09 8.48 16 17 O -0.52 -10.49 15.86 5.56 0.09 -10.40 16 18 C -0.12 -2.25 6.16 36.01 0.22 -2.03 16 19 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 20 C -0.52 -14.74 10.04 30.94 0.31 -14.42 16 21 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.16 13.97 55.49 0.78 -25.38 16 24 Si 0.86 21.43 27.74 -169.99 -4.72 16.71 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 28 C 0.11 0.60 8.19 -2.77 -0.02 0.58 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.35 7.90 -51.93 -0.41 -0.06 16 33 H 0.05 0.31 7.29 -51.93 -0.38 -0.07 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.11 0.49 8.05 -51.93 -0.42 0.07 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 43 H 0.40 2.99 8.47 -40.82 -0.35 2.65 16 44 H 0.10 1.61 8.14 -51.91 -0.42 1.19 16 45 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.50 7.92 -51.93 -0.41 0.09 16 LS Contribution 412.51 15.07 6.22 6.22 Total: -1.00 -36.07 412.51 -9.67 -45.73 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.24 Total: -1.90 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.92 Total: -3.99 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.20 Total: -39.34 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.18 Total: -17.95 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.72 Total: 16.71 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.07 -9.67 -45.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721382003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds