Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 C 1.53002 * 109.47257 * 120.00592 * 2 1 3 5 5 H 1.09000 * 115.55766 * 274.29174 * 4 2 1 6 6 C 1.53002 * 117.49773 * 128.60858 * 4 2 1 7 7 C 1.53000 * 60.02940 * 252.51785 * 6 4 2 8 8 H 1.09008 * 117.49673 * 107.47884 * 7 6 4 9 9 C 1.50690 * 117.50063 * 252.49714 * 7 6 4 10 10 O 1.21283 * 120.00042 * 68.61154 * 9 7 6 11 11 N 1.34777 * 120.00347 * 248.60878 * 9 7 6 12 12 C 1.47070 * 136.05656 * 359.63380 * 11 9 7 13 13 C 1.53756 * 87.88815 * 152.95897 * 12 11 9 14 14 C 1.53000 * 114.08564 * 139.78191 * 13 12 11 15 15 N 1.46495 * 109.47232 * 91.56002 * 14 13 12 16 16 C 1.34778 * 119.99988 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99895 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00144 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47233 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99946 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99802 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99704 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99832 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00267 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47186 * 89.99433 * 24 22 20 26 26 H 1.48501 * 109.47098 * 209.99625 * 24 22 20 27 27 H 1.48504 * 109.46823 * 329.99773 * 24 22 20 28 28 C 1.47068 * 136.05982 * 179.97438 * 11 9 7 29 29 H 1.09005 * 109.47022 * 299.99494 * 1 2 3 30 30 H 1.08999 * 109.47243 * 59.99543 * 1 2 3 31 31 H 1.09007 * 109.46786 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47022 * 240.00506 * 2 1 3 33 33 H 1.08996 * 109.47317 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47382 * 300.00946 * 3 2 1 35 35 H 1.09005 * 109.46652 * 60.00280 * 3 2 1 36 36 H 1.09002 * 117.49918 * 145.01819 * 6 4 2 37 37 H 1.09002 * 117.49754 * 0.02562 * 6 4 2 38 38 H 1.09001 * 113.46654 * 267.69541 * 12 11 9 39 39 H 1.08996 * 113.46751 * 38.12923 * 12 11 9 40 40 H 1.09004 * 114.39542 * 272.67229 * 13 12 11 41 41 H 1.09002 * 109.47266 * 211.56401 * 14 13 12 42 42 H 1.09004 * 109.46970 * 331.55569 * 14 13 12 43 43 H 0.96996 * 120.00501 * 359.97438 * 15 14 13 44 44 H 1.08998 * 109.47274 * 299.99575 * 18 16 15 45 45 H 1.09000 * 109.46929 * 60.00262 * 18 16 15 46 46 H 0.96997 * 119.99938 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.46931 * 321.86361 * 28 11 9 48 48 H 1.08999 * 113.46664 * 92.30548 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 2.1274 -0.1062 2.1447 6 6 3.0740 -1.8317 1.0511 7 6 1.6357 -2.1861 1.4340 8 1 1.0064 -2.6352 0.6656 9 6 1.3886 -2.6679 2.8403 10 8 1.5124 -1.9035 3.7738 11 7 1.0301 -3.9483 3.0608 12 6 0.7786 -5.1356 2.2302 13 6 1.1796 -5.9963 3.4395 14 6 0.3117 -7.2411 3.6351 15 7 0.9144 -8.3729 2.9267 16 6 0.3199 -9.5821 2.9591 17 8 -0.7143 -9.7330 3.5744 18 6 0.9396 -10.7462 2.2299 19 16 -0.0871 -12.2188 2.4615 20 6 0.8446 -13.3906 1.5322 21 1 1.7562 -13.0867 1.0393 22 6 0.4073 -14.7043 1.4346 23 7 1.1031 -15.5796 0.7400 24 14 -1.1690 -15.2299 2.2879 25 1 -2.3177 -15.0406 1.3660 26 1 -1.0715 -16.6617 2.6697 27 1 -1.3710 -14.4053 3.5063 28 6 0.7124 -4.7714 4.2374 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 3.8415 -1.9470 1.8164 37 1 3.3911 -2.0479 0.0309 38 1 -0.2665 -5.2508 1.9428 39 1 1.4611 -5.2267 1.3852 40 1 2.2483 -6.1974 3.5144 41 1 0.2429 -7.4727 4.6980 42 1 -0.6863 -7.0541 3.2388 43 1 1.7413 -8.2522 2.4343 44 1 1.0074 -10.5146 1.1670 45 1 1.9379 -10.9330 2.6256 46 1 0.7974 -16.4976 0.6715 47 1 1.3386 -4.5524 5.1023 48 1 -0.3502 -4.7905 4.4797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721382004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -25.763963 kcal Electronic energy + Delta-G solvation = -25825.021861 eV Core-core repulsion = 22007.862169 eV Total energy + Delta-G solvation = -3817.159691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05941 -39.61681 -38.94011 -37.43772 -34.65332 -33.77992 -32.46452 -31.23023 -29.39663 -27.64304 -26.71759 -26.31941 -25.60654 -23.94489 -23.29260 -21.30243 -20.53053 -20.21754 -19.25668 -17.98566 -17.56596 -16.76045 -16.57591 -16.40691 -15.69141 -15.50478 -15.20192 -14.97302 -14.88354 -14.43770 -14.16152 -13.82551 -13.60206 -13.54099 -13.28991 -13.11970 -13.03855 -12.90869 -12.81121 -12.63173 -12.54204 -11.94760 -11.81928 -11.76879 -11.63575 -11.29415 -11.16215 -11.08827 -11.02799 -10.74794 -10.63810 -10.54561 -10.15684 -9.88282 -9.59994 -9.16648 -9.08513 -9.01394 -8.53370 -6.94962 -6.31441 -4.03532 2.06164 2.32641 2.71470 2.90987 3.22505 3.31272 3.33666 3.48387 3.56555 3.81730 3.86856 4.20834 4.25264 4.30787 4.38255 4.44965 4.55794 4.60073 4.67918 4.77353 4.79519 4.84175 4.92983 4.99397 5.07732 5.09565 5.12680 5.20165 5.21576 5.22568 5.29597 5.38852 5.42122 5.43035 5.53346 5.54599 5.63682 5.67591 5.72554 5.78084 5.81888 5.95098 5.97153 6.42133 7.26910 7.51798 7.76093 7.91520 8.38872 8.41773 9.14741 10.77748 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.001579 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.761081 B =17726.708884 C =18252.004983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.111 4.111 5 H 0.118 0.882 6 C -0.147 4.147 7 C -0.185 4.185 8 H 0.122 0.878 9 C 0.573 3.427 10 O -0.540 6.540 11 N -0.646 5.646 12 C 0.103 3.897 13 C -0.136 4.136 14 C 0.134 3.866 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.114 3.886 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.083 0.917 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 31.329 -0.999 31.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.202 4.202 4 C -0.129 4.129 5 H 0.136 0.864 6 C -0.184 4.184 7 C -0.206 4.206 8 H 0.140 0.860 9 C 0.364 3.636 10 O -0.417 6.417 11 N -0.381 5.381 12 C -0.020 4.020 13 C -0.156 4.156 14 C 0.009 3.991 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.009 4.009 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.234 0.766 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.526 31.549 0.432 31.589 hybrid contribution 0.941 -0.414 -0.812 1.310 sum 2.467 31.134 -0.379 31.234 Atomic orbital electron populations 1.21831 0.94732 1.01923 1.01952 1.20757 0.95939 0.96250 0.95627 1.21803 1.01196 0.95236 1.01990 1.22524 1.00892 0.89057 1.00456 0.86449 1.23107 0.90348 1.01870 1.03101 1.22186 1.01688 1.01365 0.95330 0.85973 1.19224 0.75706 0.78839 0.89836 1.90711 1.52682 1.53292 1.45036 1.49482 1.68128 1.08685 1.11805 1.23274 1.02047 0.81037 0.95606 1.23288 1.01759 0.93337 0.97173 1.21150 0.96099 0.83679 0.98174 1.45930 1.28693 1.09212 1.55326 1.20289 0.84465 0.83136 0.80435 1.90711 1.23005 1.83558 1.42014 1.23279 1.04079 0.97001 1.03152 1.84805 1.35237 1.01610 1.69923 1.22314 1.12539 0.95821 1.36323 0.89380 1.24712 0.97127 0.95296 0.94135 1.69936 1.38653 1.04024 1.39029 0.86735 0.83498 0.79330 0.82289 1.19210 1.19926 1.15924 1.22931 1.01611 0.85537 0.90854 0.92423 0.92485 0.92703 0.90918 0.92429 0.92440 0.92444 0.88239 0.87624 0.89046 0.89846 0.86821 0.90680 0.90899 0.76551 0.88460 0.88422 0.91925 0.89884 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.03 37.16 0.34 -0.49 16 2 C -0.07 -0.37 3.07 -90.62 -0.28 -0.64 16 3 C -0.14 -0.71 9.18 37.16 0.34 -0.37 16 4 C -0.11 -0.77 4.67 -90.58 -0.42 -1.19 16 5 H 0.12 1.02 7.64 -51.93 -0.40 0.63 16 6 C -0.15 -0.90 9.88 -26.73 -0.26 -1.17 16 7 C -0.18 -1.35 5.22 -91.74 -0.48 -1.83 16 8 H 0.12 0.73 7.61 -51.92 -0.40 0.34 16 9 C 0.57 5.90 7.86 -10.99 -0.09 5.81 16 10 O -0.54 -7.61 17.04 5.56 0.09 -7.52 16 11 N -0.65 -5.34 3.69 -185.06 -0.68 -6.02 16 12 C 0.10 0.59 8.00 -8.37 -0.07 0.52 16 13 C -0.14 -0.80 4.12 -89.98 -0.37 -1.17 16 14 C 0.13 1.13 5.59 -4.04 -0.02 1.11 16 15 N -0.74 -7.70 5.56 -60.30 -0.33 -8.04 16 16 C 0.53 8.57 7.85 -10.99 -0.09 8.49 16 17 O -0.52 -10.49 15.86 5.56 0.09 -10.40 16 18 C -0.12 -2.25 6.16 36.00 0.22 -2.03 16 19 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 20 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 24 Si 0.86 21.43 27.74 -169.99 -4.72 16.72 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 28 C 0.11 0.81 8.19 -8.52 -0.07 0.74 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.31 7.29 -51.93 -0.38 -0.07 16 32 H 0.07 0.35 7.90 -51.93 -0.41 -0.06 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.47 8.05 -51.93 -0.42 0.06 16 38 H 0.09 0.48 7.87 -51.93 -0.41 0.07 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.65 7.80 -51.93 -0.40 0.25 16 43 H 0.40 3.02 8.47 -40.82 -0.35 2.68 16 44 H 0.10 1.62 8.14 -51.92 -0.42 1.19 16 45 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 412.47 15.07 6.22 6.22 Total: -1.00 -36.02 412.47 -9.81 -45.83 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.23 Total: -1.91 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.03 Total: -3.99 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.24 Total: -39.45 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.72 Total: 16.72 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.02 -9.81 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721382004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.068 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds