Wall clock time and date at job start Sat Apr 11 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32996 * 119.99904 * 2 1 4 4 C 1.50702 * 119.99877 * 180.28095 * 3 2 1 5 5 C 1.47106 * 119.99856 * 0.02562 * 3 2 1 6 6 O 1.21610 * 119.99941 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99802 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 3 9 9 C 1.52993 * 109.47551 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.01524 * 54.30199 * 9 8 7 11 11 C 1.54268 * 110.03443 * 292.91193 * 9 8 7 12 12 C 1.54961 * 104.15854 * 217.13463 * 11 9 8 13 13 C 1.54885 * 102.77932 * 37.88748 * 12 11 9 14 14 C 1.53875 * 110.03570 * 175.69264 * 9 8 7 15 15 H 1.09002 * 110.03167 * 238.57270 * 14 9 8 16 16 N 1.46506 * 110.03010 * 359.94964 * 14 9 8 17 17 C 1.34773 * 119.99749 * 204.99664 * 16 14 9 18 18 O 1.21276 * 120.00376 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99635 * 180.02562 * 17 16 14 20 20 S 1.80995 * 109.47127 * 180.02562 * 19 17 16 21 21 C 1.76209 * 100.00141 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99879 * 0.02562 * 21 20 19 23 23 C 1.38793 * 119.99962 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00473 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00147 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47281 * 89.99486 * 25 23 21 27 27 H 1.48494 * 109.47411 * 210.00218 * 25 23 21 28 28 H 1.48506 * 109.46780 * 329.99877 * 25 23 21 29 29 H 1.08994 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46635 * 299.99407 * 1 2 3 31 31 H 1.08997 * 109.47273 * 59.99448 * 1 2 3 32 32 H 1.07991 * 119.99802 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46964 * 269.72757 * 4 3 2 34 34 H 1.08990 * 109.47042 * 29.72327 * 4 3 2 35 35 H 1.09001 * 109.46926 * 149.72868 * 4 3 2 36 36 H 0.96999 * 120.00047 * 0.02562 * 7 5 3 37 37 H 1.09000 * 109.47024 * 300.00478 * 8 7 5 38 38 H 1.09004 * 109.46875 * 60.00324 * 8 7 5 39 39 H 1.09000 * 110.48133 * 335.78178 * 11 9 8 40 40 H 1.08999 * 110.48483 * 98.42566 * 11 9 8 41 41 H 1.09007 * 110.71966 * 279.57026 * 12 11 9 42 42 H 1.09005 * 110.92365 * 156.29547 * 12 11 9 43 43 H 1.09006 * 110.48652 * 203.40328 * 13 12 11 44 44 H 1.08996 * 110.48886 * 80.76248 * 13 12 11 45 45 H 0.96998 * 119.99219 * 25.00758 * 16 14 9 46 46 H 1.09002 * 109.47838 * 300.00883 * 19 17 16 47 47 H 1.09010 * 109.47124 * 60.00325 * 19 17 16 48 48 H 0.96994 * 120.00523 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0064 5 6 1.4365 2.4257 0.0006 6 8 0.2204 2.4257 0.0006 7 7 2.1103 3.5929 0.0011 8 6 1.3779 4.8617 0.0011 9 6 2.3721 6.0246 0.0011 10 1 3.0687 5.9198 -0.8306 11 6 3.1444 6.0596 1.3361 12 6 3.3089 7.5704 1.6392 13 6 1.9588 8.1638 1.1658 14 6 1.6189 7.3620 -0.1075 15 1 1.9507 7.9066 -0.9915 16 7 0.1756 7.1207 -0.1795 17 6 -0.6308 8.0281 -0.7650 18 8 -0.1618 9.0440 -1.2325 19 6 -2.1154 7.7802 -0.8385 20 16 -2.9183 9.1691 -1.6764 21 6 -4.5952 8.6307 -1.6232 22 1 -4.8449 7.6867 -1.1619 23 6 -5.5953 9.4198 -2.1742 24 7 -5.2911 10.5707 -2.7361 25 14 -7.3731 8.8494 -2.1172 26 1 -8.0122 9.3445 -0.8715 27 1 -8.1028 9.3848 -3.2945 28 1 -7.4177 7.3652 -2.1403 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.0470 -0.9353 -0.0004 33 1 4.0467 1.1542 1.0197 34 1 4.0402 0.2607 -0.5196 35 1 4.0402 2.0406 -0.5238 36 1 3.0803 3.5930 0.0007 37 1 0.7515 4.9196 -0.8891 38 1 0.7509 4.9192 0.8909 39 1 2.5679 5.5733 2.1231 40 1 4.1187 5.5836 1.2257 41 1 4.1370 7.9904 1.0682 42 1 3.4523 7.7399 2.7064 43 1 2.0687 9.2228 0.9318 44 1 1.1906 8.0177 1.9251 45 1 -0.1994 6.3080 0.1943 46 1 -2.3035 6.8623 -1.3956 47 1 -2.5178 7.6819 0.1698 48 1 -5.9900 11.1224 -3.1208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721725645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:54 Heat of formation + Delta-G solvation = -70.400893 kcal Electronic energy + Delta-G solvation = -27090.050015 eV Core-core repulsion = 23270.954721 eV Total energy + Delta-G solvation = -3819.095294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55602 -39.70467 -37.94935 -35.42058 -34.90593 -33.53471 -32.39237 -30.99374 -29.75569 -29.49642 -27.09733 -25.68157 -25.41117 -24.88949 -22.43013 -21.12023 -20.78871 -19.91946 -19.20321 -17.85524 -16.84196 -16.64691 -16.05026 -15.80664 -15.76361 -15.34962 -14.93280 -14.76965 -14.53639 -14.46067 -14.15383 -13.89008 -13.77068 -13.43327 -13.12027 -13.03030 -12.95401 -12.66957 -12.55095 -12.32234 -12.26507 -11.85499 -11.76958 -11.54836 -11.31234 -11.19329 -11.03193 -10.98835 -10.98022 -10.82835 -10.72217 -9.81314 -9.77483 -9.55750 -9.36370 -9.18653 -9.03443 -8.84777 -8.20167 -6.46121 -6.18261 -3.88400 1.07139 2.86561 2.99601 3.08784 3.11719 3.25471 3.30920 3.36012 3.74564 4.18357 4.24153 4.27265 4.39290 4.42053 4.46817 4.82164 4.94658 5.00363 5.02571 5.11092 5.12921 5.15981 5.16970 5.21479 5.31475 5.35713 5.40393 5.44858 5.49571 5.58606 5.61259 5.62233 5.69117 5.76097 5.78417 5.93503 5.98258 6.05873 6.07772 6.13662 6.19937 6.20821 6.25300 6.68952 7.23031 7.63642 7.71176 7.98663 8.39279 8.64148 9.27294 10.89183 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.002634 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.795842 B =10626.264924 C =13047.508634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.202 4.202 4 C -0.113 4.113 5 C 0.547 3.453 6 O -0.532 6.532 7 N -0.726 5.726 8 C 0.120 3.880 9 C -0.112 4.112 10 H 0.088 0.912 11 C -0.120 4.120 12 C -0.123 4.123 13 C -0.136 4.136 14 C 0.152 3.848 15 H 0.095 0.905 16 N -0.738 5.738 17 C 0.533 3.467 18 O -0.517 6.517 19 C -0.155 4.155 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.399 0.601 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.454 -19.373 9.388 31.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.170 4.170 5 C 0.336 3.664 6 O -0.411 6.411 7 N -0.379 5.379 8 C -0.004 4.004 9 C -0.131 4.131 10 H 0.107 0.893 11 C -0.157 4.157 12 C -0.161 4.161 13 C -0.175 4.175 14 C 0.046 3.954 15 H 0.113 0.887 16 N -0.395 5.395 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.236 0.764 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.278 -17.485 8.491 29.565 hybrid contribution -1.318 -1.905 0.740 2.432 sum 20.960 -19.390 9.231 30.008 Atomic orbital electron populations 1.21060 0.91570 1.01123 1.04359 1.23667 0.97384 0.96626 0.90816 1.21444 0.96315 0.93183 1.09558 1.20754 0.90979 1.02892 1.02384 1.18427 0.87329 0.84064 0.76556 1.90828 1.13480 1.87504 1.49248 1.45928 1.10304 1.05575 1.76064 1.21480 0.94557 0.81546 1.02782 1.22297 0.97381 0.93944 0.99476 0.89337 1.22483 0.99805 0.97279 0.96157 1.22464 0.97610 0.94785 1.01215 1.22826 0.97077 1.00408 0.97157 1.21477 0.80356 0.94012 0.99529 0.88651 1.46383 1.06806 1.24245 1.62036 1.20323 0.88404 0.82794 0.76518 1.90689 1.76451 1.26476 1.45456 1.23546 0.93962 1.07308 1.05719 1.85346 1.02730 1.21553 1.73727 1.22877 0.92138 1.08849 1.44369 0.90916 1.24988 0.99476 0.94598 0.94539 1.70018 1.33686 1.10909 1.35777 0.86171 0.82594 0.78944 0.77830 1.20284 1.20773 1.19657 0.92954 0.89998 0.89883 0.85876 0.91138 0.91165 0.91818 0.76579 0.90487 0.91098 0.91093 0.91415 0.91212 0.91267 0.90657 0.90947 0.76364 0.89198 0.89244 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.45 36.01 0.30 -0.80 16 2 C -0.07 -0.48 9.95 -36.12 -0.36 -0.84 16 3 C -0.20 -1.54 6.00 -102.84 -0.62 -2.16 16 4 C -0.11 -0.50 9.61 36.01 0.35 -0.15 16 5 C 0.55 5.62 7.72 -12.66 -0.10 5.52 16 6 O -0.53 -7.38 13.07 5.27 0.07 -7.31 16 7 N -0.73 -5.76 5.34 -61.50 -0.33 -6.09 16 8 C 0.12 1.09 3.60 -4.05 -0.01 1.07 16 9 C -0.11 -0.87 2.97 -89.50 -0.27 -1.14 16 10 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.12 -0.76 6.05 -25.03 -0.15 -0.91 16 12 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 13 C -0.14 -1.42 6.53 -25.08 -0.16 -1.58 16 14 C 0.15 1.71 3.22 -66.81 -0.22 1.49 16 15 H 0.10 1.24 7.56 -51.93 -0.39 0.85 16 16 N -0.74 -9.99 4.40 -52.72 -0.23 -10.23 16 17 C 0.53 10.06 7.84 -10.99 -0.09 9.97 16 18 O -0.52 -11.65 15.52 5.56 0.09 -11.56 16 19 C -0.15 -3.23 6.16 36.00 0.22 -3.01 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.54 9.50 30.94 0.29 -15.24 16 22 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 25 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.85 7.22 -51.93 -0.37 0.48 16 31 H 0.08 0.90 7.22 -51.93 -0.37 0.52 16 32 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.06 0.23 6.72 -51.93 -0.35 -0.12 16 36 H 0.40 2.12 6.44 -40.82 -0.26 1.86 16 37 H 0.08 0.86 7.46 -51.93 -0.39 0.47 16 38 H 0.07 0.69 7.08 -51.93 -0.37 0.32 16 39 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 45 H 0.40 4.70 5.89 -40.82 -0.24 4.46 16 46 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 47 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -36.04 399.92 -9.71 -45.75 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.76 Total: 3.08 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.07 Total: -6.81 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.17 Total: -42.13 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.16 Total: -18.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.04 -9.71 -45.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721725645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.652 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds