Wall clock time and date at job start Sat Apr 11 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32996 * 119.99904 * 2 1 4 4 C 1.50702 * 119.99877 * 180.28095 * 3 2 1 5 5 C 1.47106 * 119.99856 * 0.02562 * 3 2 1 6 6 O 1.21610 * 119.99941 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99802 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 3 9 9 C 1.52993 * 109.47551 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.01524 * 54.30199 * 9 8 7 11 11 C 1.54268 * 110.03443 * 292.91193 * 9 8 7 12 12 C 1.54961 * 104.15854 * 217.13463 * 11 9 8 13 13 C 1.54885 * 102.77932 * 37.88748 * 12 11 9 14 14 C 1.53875 * 110.03570 * 175.69264 * 9 8 7 15 15 H 1.09002 * 110.03167 * 238.57270 * 14 9 8 16 16 N 1.46506 * 110.03010 * 359.94964 * 14 9 8 17 17 C 1.34773 * 119.99749 * 204.99664 * 16 14 9 18 18 O 1.21276 * 120.00376 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99635 * 180.02562 * 17 16 14 20 20 S 1.80995 * 109.47127 * 180.02562 * 19 17 16 21 21 C 1.76209 * 100.00141 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99879 * 0.02562 * 21 20 19 23 23 C 1.38793 * 119.99962 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00473 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00147 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47281 * 89.99486 * 25 23 21 27 27 H 1.48494 * 109.47411 * 210.00218 * 25 23 21 28 28 H 1.48506 * 109.46780 * 329.99877 * 25 23 21 29 29 H 1.08994 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46635 * 299.99407 * 1 2 3 31 31 H 1.08997 * 109.47273 * 59.99448 * 1 2 3 32 32 H 1.07991 * 119.99802 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46964 * 269.72757 * 4 3 2 34 34 H 1.08990 * 109.47042 * 29.72327 * 4 3 2 35 35 H 1.09001 * 109.46926 * 149.72868 * 4 3 2 36 36 H 0.96999 * 120.00047 * 0.02562 * 7 5 3 37 37 H 1.09000 * 109.47024 * 300.00478 * 8 7 5 38 38 H 1.09004 * 109.46875 * 60.00324 * 8 7 5 39 39 H 1.09000 * 110.48133 * 335.78178 * 11 9 8 40 40 H 1.08999 * 110.48483 * 98.42566 * 11 9 8 41 41 H 1.09007 * 110.71966 * 279.57026 * 12 11 9 42 42 H 1.09005 * 110.92365 * 156.29547 * 12 11 9 43 43 H 1.09006 * 110.48652 * 203.40328 * 13 12 11 44 44 H 1.08996 * 110.48886 * 80.76248 * 13 12 11 45 45 H 0.96998 * 119.99219 * 25.00758 * 16 14 9 46 46 H 1.09002 * 109.47838 * 300.00883 * 19 17 16 47 47 H 1.09010 * 109.47124 * 60.00325 * 19 17 16 48 48 H 0.96994 * 120.00523 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0064 5 6 1.4365 2.4257 0.0006 6 8 0.2204 2.4257 0.0006 7 7 2.1103 3.5929 0.0011 8 6 1.3779 4.8617 0.0011 9 6 2.3721 6.0246 0.0011 10 1 3.0687 5.9198 -0.8306 11 6 3.1444 6.0596 1.3361 12 6 3.3089 7.5704 1.6392 13 6 1.9588 8.1638 1.1658 14 6 1.6189 7.3620 -0.1075 15 1 1.9507 7.9066 -0.9915 16 7 0.1756 7.1207 -0.1795 17 6 -0.6308 8.0281 -0.7650 18 8 -0.1618 9.0440 -1.2325 19 6 -2.1154 7.7802 -0.8385 20 16 -2.9183 9.1691 -1.6764 21 6 -4.5952 8.6307 -1.6232 22 1 -4.8449 7.6867 -1.1619 23 6 -5.5953 9.4198 -2.1742 24 7 -5.2911 10.5707 -2.7361 25 14 -7.3731 8.8494 -2.1172 26 1 -8.0122 9.3445 -0.8715 27 1 -8.1028 9.3848 -3.2945 28 1 -7.4177 7.3652 -2.1403 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.0470 -0.9353 -0.0004 33 1 4.0467 1.1542 1.0197 34 1 4.0402 0.2607 -0.5196 35 1 4.0402 2.0406 -0.5238 36 1 3.0803 3.5930 0.0007 37 1 0.7515 4.9196 -0.8891 38 1 0.7509 4.9192 0.8909 39 1 2.5679 5.5733 2.1231 40 1 4.1187 5.5836 1.2257 41 1 4.1370 7.9904 1.0682 42 1 3.4523 7.7399 2.7064 43 1 2.0687 9.2228 0.9318 44 1 1.1906 8.0177 1.9251 45 1 -0.1994 6.3080 0.1943 46 1 -2.3035 6.8623 -1.3956 47 1 -2.5178 7.6819 0.1698 48 1 -5.9900 11.1224 -3.1208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721725645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:53 Heat of formation + Delta-G solvation = -94.957186 kcal Electronic energy + Delta-G solvation = -27091.114856 eV Core-core repulsion = 23270.954721 eV Total energy + Delta-G solvation = -3820.160135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47905 -40.73626 -39.11630 -36.03451 -35.70408 -34.76618 -34.60257 -31.67057 -31.16968 -30.20101 -28.20041 -27.59290 -26.31421 -25.52088 -23.17674 -22.23915 -21.61172 -20.83944 -20.13241 -19.75011 -18.17865 -17.50324 -17.03875 -16.90188 -16.73557 -16.66253 -16.35201 -16.12849 -15.92835 -15.21640 -15.13923 -14.84317 -14.80540 -14.51208 -14.31539 -13.96466 -13.75699 -13.64729 -13.47713 -13.36425 -13.19647 -12.97336 -12.90349 -12.82261 -12.65152 -12.43116 -12.32681 -11.97361 -11.87636 -11.75419 -11.73500 -11.52155 -11.16714 -10.97335 -10.59590 -10.32458 -10.28370 -10.10041 -9.78814 -8.69380 -8.37222 -6.15416 0.45493 1.24039 1.40222 1.43784 1.55424 1.56841 2.12454 2.24760 2.28088 2.32818 2.96569 3.28386 3.45232 3.55566 3.69536 3.84131 3.93490 3.97787 4.21413 4.24246 4.27773 4.37787 4.39621 4.43828 4.46221 4.51881 4.55110 4.68764 4.75819 4.80236 4.84094 4.84722 4.91523 5.04307 5.04906 5.13518 5.20323 5.24903 5.27886 5.39184 5.39360 5.46779 5.53001 5.56071 5.66957 6.17360 6.39895 6.59284 7.03933 7.18559 7.27559 8.72066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.002634 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.795842 B =10626.264924 C =13047.508634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 C -0.207 4.207 4 C -0.110 4.110 5 C 0.535 3.465 6 O -0.578 6.578 7 N -0.710 5.710 8 C 0.122 3.878 9 C -0.096 4.096 10 H 0.107 0.893 11 C -0.111 4.111 12 C -0.114 4.114 13 C -0.138 4.138 14 C 0.145 3.855 15 H 0.076 0.924 16 N -0.714 5.714 17 C 0.536 3.464 18 O -0.559 6.559 19 C -0.134 4.134 20 S -0.143 6.143 21 C -0.549 4.549 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.998 3.002 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.410 0.590 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.372 -22.140 10.688 34.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.210 4.210 4 C -0.167 4.167 5 C 0.326 3.674 6 O -0.460 6.460 7 N -0.363 5.363 8 C -0.002 4.002 9 C -0.116 4.116 10 H 0.125 0.875 11 C -0.148 4.148 12 C -0.152 4.152 13 C -0.177 4.177 14 C 0.040 3.960 15 H 0.094 0.906 16 N -0.370 5.370 17 C 0.322 3.678 18 O -0.437 6.437 19 C -0.285 4.285 20 S 0.084 5.916 21 C -0.697 4.697 22 H 0.097 0.903 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.249 0.751 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.269 -20.287 9.822 33.121 hybrid contribution -1.836 -1.079 0.368 2.161 sum 22.432 -21.366 10.190 32.612 Atomic orbital electron populations 1.20970 0.93356 1.01513 1.02166 1.23906 0.96325 0.98066 0.90440 1.21657 0.98132 0.91727 1.09463 1.20813 0.88153 1.04108 1.03584 1.19039 0.87063 0.85461 0.75844 1.90815 1.15559 1.88204 1.51408 1.45759 1.11036 1.04538 1.74968 1.21331 0.94841 0.82651 1.01374 1.22214 0.96845 0.90928 1.01569 0.87489 1.22478 1.01012 0.96665 0.94660 1.22441 0.95568 0.95181 1.01992 1.22798 0.99166 0.99302 0.96416 1.21736 0.78610 0.96346 0.99357 0.90552 1.46193 1.07691 1.23158 1.59915 1.19990 0.87927 0.83048 0.76863 1.90675 1.76836 1.28417 1.47776 1.23400 0.95051 1.04370 1.05665 1.85461 1.04219 1.26349 1.75551 1.23195 0.92481 1.09253 1.44739 0.90274 1.26120 1.04734 0.94505 0.93700 1.70172 1.35472 1.12316 1.36658 0.84958 0.75890 0.78877 0.78285 1.19155 1.20002 1.18487 0.91110 0.92136 0.92469 0.82604 0.89811 0.89794 0.90834 0.74643 0.92881 0.91711 0.91073 0.88280 0.90210 0.90109 0.92754 0.91649 0.75060 0.87948 0.87603 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.45 71.24 0.60 -1.59 16 2 C -0.07 -0.87 9.95 24.52 0.24 -0.62 16 3 C -0.21 -2.72 6.00 -18.70 -0.11 -2.84 16 4 C -0.11 -0.56 9.61 71.24 0.68 0.12 16 5 C 0.54 10.50 7.72 86.57 0.67 11.17 16 6 O -0.58 -16.42 13.07 -4.06 -0.05 -16.47 16 7 N -0.71 -9.84 5.34 -466.73 -2.49 -12.33 16 8 C 0.12 2.07 3.60 86.38 0.31 2.38 16 9 C -0.10 -1.29 2.97 -10.07 -0.03 -1.32 16 10 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 11 C -0.11 -1.00 6.05 31.69 0.19 -0.81 16 12 C -0.11 -1.37 6.91 31.91 0.22 -1.15 16 13 C -0.14 -2.80 6.53 31.67 0.21 -2.60 16 14 C 0.14 3.18 3.22 45.71 0.15 3.33 16 15 H 0.08 2.03 7.56 -2.39 -0.02 2.01 16 16 N -0.71 -19.45 4.40 -439.11 -1.93 -21.38 16 17 C 0.54 20.78 7.84 87.66 0.69 21.47 16 18 O -0.56 -26.35 15.52 -3.02 -0.05 -26.40 16 19 C -0.13 -5.70 6.16 71.24 0.44 -5.26 16 20 S -0.14 -8.21 20.57 -56.49 -1.16 -9.38 16 21 C -0.55 -32.53 9.50 67.95 0.65 -31.88 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.83 5.49 84.86 0.47 1.30 16 24 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 25 Si 1.00 44.99 29.55 68.60 2.03 47.02 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.32 7.22 -2.38 -0.02 1.30 16 31 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 32 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.08 0.24 8.07 -2.39 -0.02 0.23 16 35 H 0.07 0.23 6.72 -2.39 -0.02 0.21 16 36 H 0.42 2.97 6.44 -92.71 -0.60 2.37 16 37 H 0.05 1.18 7.46 -2.39 -0.02 1.16 16 38 H 0.06 1.19 7.08 -2.38 -0.02 1.18 16 39 H 0.07 0.71 7.77 -2.39 -0.02 0.69 16 40 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 45 H 0.41 9.57 5.89 -92.71 -0.55 9.02 16 46 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 47 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -83.38 399.92 1.83 -81.56 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.17 Total: 22.36 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.37 Total: -8.30 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -4.14 Total: -90.40 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.10 Total: -42.87 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -83.38 1.83 -81.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721725645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.402 kcal (2) G-P(sol) polarization free energy of solvation -83.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds