Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00344 * 2 1 4 4 C 1.52999 * 109.47063 * 124.99873 * 3 2 1 5 5 C 1.50700 * 109.46594 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00385 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99469 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99888 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.01876 * 33.60073 * 8 7 5 10 10 C 1.54224 * 110.04083 * 272.21648 * 8 7 5 11 11 C 1.54266 * 106.42656 * 240.66754 * 10 8 7 12 12 C 1.54891 * 104.31343 * 23.64256 * 11 10 8 13 13 C 1.54264 * 110.03134 * 154.99796 * 8 7 5 14 14 H 1.09001 * 110.59511 * 214.45459 * 13 8 7 15 15 C 1.52994 * 110.48765 * 337.04313 * 13 8 7 16 16 N 1.46502 * 109.47169 * 181.23342 * 15 13 8 17 17 C 1.34778 * 120.00350 * 180.02562 * 16 15 13 18 18 O 1.21282 * 119.99323 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00029 * 179.97438 * 17 16 15 20 20 S 1.81001 * 109.46987 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99890 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99995 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99874 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99738 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00170 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47200 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47329 * 120.00028 * 25 23 21 28 28 H 1.48499 * 109.47075 * 240.00394 * 25 23 21 29 29 H 1.07996 * 120.00294 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99711 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99586 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46760 * 4.99263 * 3 2 1 33 33 H 1.09002 * 109.46911 * 245.00180 * 3 2 1 34 34 H 1.08996 * 109.47340 * 60.00234 * 4 3 2 35 35 H 1.09002 * 109.46789 * 299.99738 * 4 3 2 36 36 H 0.97003 * 120.00572 * 359.97438 * 7 5 4 37 37 H 1.08998 * 110.14251 * 121.41994 * 10 8 7 38 38 H 1.09004 * 110.08793 * 359.88238 * 10 8 7 39 39 H 1.09002 * 110.48609 * 264.89669 * 11 10 8 40 40 H 1.08998 * 110.48769 * 142.38762 * 11 10 8 41 41 H 1.09000 * 110.75322 * 80.30558 * 12 11 10 42 42 H 1.09002 * 110.75658 * 203.67757 * 12 11 10 43 43 H 1.08999 * 109.46998 * 301.23023 * 15 13 8 44 44 H 1.08998 * 109.47350 * 61.22977 * 15 13 8 45 45 H 0.97009 * 119.99637 * 359.97438 * 16 15 13 46 46 H 1.08999 * 109.47174 * 299.99611 * 19 17 16 47 47 H 1.08998 * 109.47329 * 59.99661 * 19 17 16 48 48 H 0.97000 * 119.99564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6384 1.1819 6 8 3.5697 3.4647 0.3215 7 7 4.7052 2.8870 2.1378 8 6 5.4369 4.1562 2.1385 9 1 4.7971 4.9560 1.7657 10 6 6.7001 4.0385 1.2615 11 6 7.9026 4.3033 2.1908 12 6 7.3755 3.9603 3.6063 13 6 5.9195 4.4872 3.5658 14 1 5.8983 5.5633 3.7378 15 6 5.0591 3.7633 4.6033 16 7 5.5172 4.1159 5.9494 17 6 4.9031 3.5926 7.0290 18 8 3.9707 2.8302 6.8860 19 6 5.3748 3.9549 8.4137 20 16 4.3568 3.0986 9.6411 21 6 5.1063 3.6860 11.1236 22 1 5.9400 4.3705 11.0726 23 6 4.6245 3.2696 12.3570 24 7 3.6080 2.4356 12.4190 25 14 5.4186 3.8928 13.9287 26 1 6.5335 4.8130 13.5888 27 1 4.4083 4.6184 14.7398 28 1 5.9451 2.7428 14.7069 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0894 33 1 2.6214 1.4025 -0.9314 34 1 3.7400 0.5065 1.0921 35 1 2.4772 1.2356 2.1130 36 1 4.8802 2.2259 2.8258 37 1 6.6738 4.7810 0.4640 38 1 6.7694 3.0367 0.8374 39 1 8.2019 5.3501 2.1384 40 1 8.7383 3.6550 1.9275 41 1 7.3921 2.8834 3.7741 42 1 7.9534 4.4804 4.3702 43 1 4.0177 4.0623 4.4840 44 1 5.1465 2.6863 4.4602 45 1 6.2632 4.7254 6.0637 46 1 6.4162 3.6559 8.5326 47 1 5.2873 5.0319 8.5571 48 1 3.2716 2.1444 13.2809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721726604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -77.063704 kcal Electronic energy + Delta-G solvation = -26516.036602 eV Core-core repulsion = 22696.652387 eV Total energy + Delta-G solvation = -3819.384215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62564 -39.28347 -38.26643 -35.64298 -34.47547 -33.85583 -32.45196 -31.09900 -30.73983 -28.67204 -28.11929 -25.55774 -24.86299 -24.28961 -21.28521 -20.88495 -20.24829 -20.09817 -19.89436 -17.89893 -17.50443 -16.65275 -16.21152 -16.09416 -15.75139 -15.55890 -15.28896 -14.99693 -14.82737 -14.73362 -14.26198 -13.99625 -13.84803 -13.55359 -13.15989 -13.03500 -12.88357 -12.61725 -12.49304 -12.09158 -11.89478 -11.68615 -11.49089 -11.37582 -11.30799 -11.24844 -11.09595 -11.04758 -11.04274 -10.97695 -10.77420 -10.11042 -9.83130 -9.61703 -9.46164 -9.34351 -9.10290 -8.94725 -8.26197 -6.52751 -6.24303 -3.94864 1.96913 2.40846 2.88727 3.00431 3.05343 3.19730 3.26227 3.30518 3.64253 4.14243 4.15348 4.18046 4.36021 4.44056 4.59432 4.81290 4.85974 4.93482 4.98953 5.01444 5.02836 5.06004 5.11087 5.16580 5.18524 5.27927 5.29162 5.38902 5.54853 5.55398 5.59976 5.66285 5.67163 5.76388 5.79074 5.83430 5.84803 5.87981 5.97146 6.10585 6.24294 6.33923 6.47241 6.54314 7.21243 7.57524 7.64604 7.97542 8.33016 8.55888 9.21289 10.83177 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002134 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.938840 B =13117.266658 C =15201.585518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.078 4.078 4 C -0.140 4.140 5 C 0.515 3.485 6 O -0.542 6.542 7 N -0.727 5.727 8 C 0.150 3.850 9 H 0.094 0.906 10 C -0.132 4.132 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.113 4.113 14 H 0.096 0.904 15 C 0.131 3.869 16 N -0.737 5.737 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 0.725 -25.235 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.115 4.115 4 C -0.180 4.180 5 C 0.302 3.698 6 O -0.419 6.419 7 N -0.381 5.381 8 C 0.044 3.956 9 H 0.112 0.888 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.159 4.159 13 C -0.133 4.133 14 H 0.114 0.886 15 C 0.007 3.993 16 N -0.392 5.392 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.002 -0.061 -25.985 26.292 hybrid contribution 2.047 1.194 1.633 2.878 sum 6.049 1.134 -24.353 25.118 Atomic orbital electron populations 1.23904 0.96011 1.01987 1.00809 1.22957 0.96122 0.98297 1.00200 1.20485 0.97762 0.95536 0.97742 1.21663 0.99200 0.95411 1.01689 1.20763 0.79144 0.89040 0.80856 1.90695 1.65915 1.48172 1.37165 1.46331 1.40847 1.19910 1.31012 1.21586 0.93105 0.86663 0.94206 0.88823 1.22645 0.93727 1.02590 0.98135 1.22355 0.97523 1.01689 0.94619 1.22627 0.94481 1.01531 0.97255 1.22555 0.95690 1.01547 0.93465 0.88619 1.21198 0.98172 0.98935 0.81001 1.45985 1.37348 1.50658 1.05244 1.20321 0.82250 0.79838 0.85824 1.90702 1.27625 1.34376 1.86465 1.23529 1.05525 1.05483 0.95885 1.85398 1.42514 1.60040 0.95461 1.22904 1.20489 1.33141 0.91783 0.90872 1.25003 0.94959 0.94790 0.98899 1.70029 1.23560 1.30861 1.25813 0.86111 0.79063 0.78632 0.81652 1.19622 1.20560 1.20557 0.88445 0.88488 0.87313 0.90716 0.90366 0.88711 0.88349 0.75970 0.91046 0.91181 0.91339 0.91422 0.90934 0.90874 0.91349 0.91888 0.76787 0.89227 0.89238 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.32 29.01 0.42 -0.98 16 2 C -0.16 -1.16 9.52 -36.02 -0.34 -1.50 16 3 C -0.08 -0.63 4.95 -27.88 -0.14 -0.77 16 4 C -0.14 -1.04 5.68 -27.88 -0.16 -1.20 16 5 C 0.51 5.02 7.83 -10.99 -0.09 4.94 16 6 O -0.54 -7.17 15.64 5.56 0.09 -7.08 16 7 N -0.73 -5.90 4.35 -52.54 -0.23 -6.13 16 8 C 0.15 1.19 3.12 -66.63 -0.21 0.99 16 9 H 0.09 0.89 7.57 -51.93 -0.39 0.50 16 10 C -0.13 -0.94 6.62 -25.43 -0.17 -1.11 16 11 C -0.12 -0.74 6.82 -25.07 -0.17 -0.91 16 12 C -0.12 -0.77 6.01 -24.74 -0.15 -0.92 16 13 C -0.11 -0.82 2.89 -88.96 -0.26 -1.08 16 14 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 15 C 0.13 1.34 4.28 -4.04 -0.02 1.32 16 16 N -0.74 -8.87 5.40 -60.30 -0.33 -9.19 16 17 C 0.53 9.40 7.85 -10.98 -0.09 9.31 16 18 O -0.52 -11.24 15.86 5.56 0.09 -11.16 16 19 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.53 -15.04 9.50 30.94 0.29 -14.75 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 25 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.10 0.70 7.84 -52.48 -0.41 0.29 16 31 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.07 0.70 7.75 -51.93 -0.40 0.29 16 33 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 2.82 6.47 -40.82 -0.26 2.56 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.64 6.26 -51.93 -0.33 0.32 16 45 H 0.40 3.67 8.32 -40.82 -0.34 3.33 16 46 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 47 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 408.85 15.07 6.16 6.16 Total: -1.00 -35.41 408.85 -9.67 -45.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.00 Total: 2.64 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.95 Total: -7.47 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.18 Total: -40.51 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.18 Total: -18.24 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.41 -9.67 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721726604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.981 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds