Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00344 * 2 1 4 4 C 1.52999 * 109.47063 * 124.99873 * 3 2 1 5 5 C 1.50700 * 109.46594 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00385 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99469 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99888 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.01876 * 33.60073 * 8 7 5 10 10 C 1.54224 * 110.04083 * 272.21648 * 8 7 5 11 11 C 1.54266 * 106.42656 * 240.66754 * 10 8 7 12 12 C 1.54891 * 104.31343 * 23.64256 * 11 10 8 13 13 C 1.54264 * 110.03134 * 154.99796 * 8 7 5 14 14 H 1.09001 * 110.59511 * 214.45459 * 13 8 7 15 15 C 1.52994 * 110.48765 * 337.04313 * 13 8 7 16 16 N 1.46502 * 109.47169 * 181.23342 * 15 13 8 17 17 C 1.34778 * 120.00350 * 180.02562 * 16 15 13 18 18 O 1.21282 * 119.99323 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00029 * 179.97438 * 17 16 15 20 20 S 1.81001 * 109.46987 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99890 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99995 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99874 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99738 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00170 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47200 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47329 * 120.00028 * 25 23 21 28 28 H 1.48499 * 109.47075 * 240.00394 * 25 23 21 29 29 H 1.07996 * 120.00294 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99711 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99586 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46760 * 4.99263 * 3 2 1 33 33 H 1.09002 * 109.46911 * 245.00180 * 3 2 1 34 34 H 1.08996 * 109.47340 * 60.00234 * 4 3 2 35 35 H 1.09002 * 109.46789 * 299.99738 * 4 3 2 36 36 H 0.97003 * 120.00572 * 359.97438 * 7 5 4 37 37 H 1.08998 * 110.14251 * 121.41994 * 10 8 7 38 38 H 1.09004 * 110.08793 * 359.88238 * 10 8 7 39 39 H 1.09002 * 110.48609 * 264.89669 * 11 10 8 40 40 H 1.08998 * 110.48769 * 142.38762 * 11 10 8 41 41 H 1.09000 * 110.75322 * 80.30558 * 12 11 10 42 42 H 1.09002 * 110.75658 * 203.67757 * 12 11 10 43 43 H 1.08999 * 109.46998 * 301.23023 * 15 13 8 44 44 H 1.08998 * 109.47350 * 61.22977 * 15 13 8 45 45 H 0.97009 * 119.99637 * 359.97438 * 16 15 13 46 46 H 1.08999 * 109.47174 * 299.99611 * 19 17 16 47 47 H 1.08998 * 109.47329 * 59.99661 * 19 17 16 48 48 H 0.97000 * 119.99564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6384 1.1819 6 8 3.5697 3.4647 0.3215 7 7 4.7052 2.8870 2.1378 8 6 5.4369 4.1562 2.1385 9 1 4.7971 4.9560 1.7657 10 6 6.7001 4.0385 1.2615 11 6 7.9026 4.3033 2.1908 12 6 7.3755 3.9603 3.6063 13 6 5.9195 4.4872 3.5658 14 1 5.8983 5.5633 3.7378 15 6 5.0591 3.7633 4.6033 16 7 5.5172 4.1159 5.9494 17 6 4.9031 3.5926 7.0290 18 8 3.9707 2.8302 6.8860 19 6 5.3748 3.9549 8.4137 20 16 4.3568 3.0986 9.6411 21 6 5.1063 3.6860 11.1236 22 1 5.9400 4.3705 11.0726 23 6 4.6245 3.2696 12.3570 24 7 3.6080 2.4356 12.4190 25 14 5.4186 3.8928 13.9287 26 1 6.5335 4.8130 13.5888 27 1 4.4083 4.6184 14.7398 28 1 5.9451 2.7428 14.7069 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0894 33 1 2.6214 1.4025 -0.9314 34 1 3.7400 0.5065 1.0921 35 1 2.4772 1.2356 2.1130 36 1 4.8802 2.2259 2.8258 37 1 6.6738 4.7810 0.4640 38 1 6.7694 3.0367 0.8374 39 1 8.2019 5.3501 2.1384 40 1 8.7383 3.6550 1.9275 41 1 7.3921 2.8834 3.7741 42 1 7.9534 4.4804 4.3702 43 1 4.0177 4.0623 4.4840 44 1 5.1465 2.6863 4.4602 45 1 6.2632 4.7254 6.0637 46 1 6.4162 3.6559 8.5326 47 1 5.2873 5.0319 8.5571 48 1 3.2716 2.1444 13.2809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721726604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -100.586386 kcal Electronic energy + Delta-G solvation = -26517.056622 eV Core-core repulsion = 22696.652387 eV Total energy + Delta-G solvation = -3820.404235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40871 -40.50004 -39.12740 -36.29034 -35.61664 -34.58269 -34.56816 -31.93161 -31.68968 -29.84863 -28.72566 -27.66584 -25.66538 -25.04145 -22.17963 -21.49975 -21.33461 -20.74776 -20.61428 -19.78570 -18.29572 -17.85195 -17.25485 -16.94984 -16.87145 -16.66793 -16.55898 -16.16586 -15.83121 -15.61668 -15.46652 -14.97691 -14.86329 -14.59627 -14.35894 -14.26891 -13.80584 -13.56409 -13.34606 -13.14849 -13.10993 -12.90909 -12.79396 -12.58951 -12.33777 -12.03096 -12.00913 -11.93122 -11.90805 -11.74322 -11.68740 -11.48186 -11.15144 -10.93639 -10.91133 -10.25511 -10.22775 -10.10777 -10.07272 -8.65076 -8.34176 -6.11530 1.28383 1.38181 1.41927 1.48369 1.59011 1.63560 1.63649 2.19536 2.27372 2.32694 3.00215 3.31799 3.48687 3.52603 3.71374 3.78510 3.97154 4.02543 4.17456 4.24743 4.26543 4.33451 4.36591 4.42262 4.44506 4.47722 4.54019 4.57701 4.68041 4.70513 4.75662 4.86428 4.92900 5.05949 5.07321 5.12264 5.20032 5.24070 5.27515 5.39651 5.43357 5.48162 5.57269 5.75086 5.89398 6.20981 6.49837 6.52601 7.07629 7.23388 7.26406 8.75176 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002134 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.938840 B =13117.266658 C =15201.585518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.582 6.582 7 N -0.720 5.720 8 C 0.148 3.852 9 H 0.076 0.924 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.099 4.099 14 H 0.109 0.891 15 C 0.132 3.868 16 N -0.709 5.709 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.130 4.130 20 S -0.152 6.152 21 C -0.544 4.544 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.417 0.583 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 1.493 -25.162 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.177 4.177 3 C -0.113 4.113 4 C -0.174 4.174 5 C 0.299 3.701 6 O -0.462 6.462 7 N -0.373 5.373 8 C 0.042 3.958 9 H 0.094 0.906 10 C -0.167 4.167 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.119 4.119 14 H 0.127 0.873 15 C 0.008 3.992 16 N -0.363 5.363 17 C 0.319 3.681 18 O -0.443 6.443 19 C -0.281 4.281 20 S 0.075 5.925 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.200 1.200 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.254 0.746 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.609 0.734 -25.932 26.771 hybrid contribution 1.266 0.994 1.467 2.178 sum 7.876 1.728 -24.465 25.759 Atomic orbital electron populations 1.24048 0.96252 1.02402 1.00797 1.23037 0.96168 0.98359 1.00168 1.20426 0.97564 0.95519 0.97823 1.21678 0.99347 0.94943 1.01481 1.21169 0.79115 0.89352 0.80419 1.90677 1.67213 1.49541 1.38788 1.46308 1.40273 1.20100 1.30625 1.21616 0.93222 0.86077 0.94839 0.90584 1.22590 0.93791 1.02190 0.98142 1.22317 0.96929 1.02470 0.93715 1.22637 0.93481 1.01514 0.97976 1.22470 0.95797 1.01939 0.91662 0.87333 1.21303 0.97918 0.99608 0.80401 1.45685 1.36669 1.49361 1.04602 1.20039 0.81992 0.79725 0.86313 1.90695 1.29855 1.36776 1.86963 1.23375 1.04821 1.05376 0.94565 1.85575 1.45867 1.62427 0.98648 1.23237 1.20614 1.33150 0.92198 0.89873 1.26127 0.95425 0.94809 1.02904 1.70190 1.25326 1.32426 1.26850 0.84912 0.78310 0.78260 0.76515 1.17971 1.20088 1.19954 0.87240 0.89000 0.85694 0.92543 0.90983 0.86245 0.87927 0.75159 0.91456 0.91684 0.90394 0.90705 0.91186 0.89528 0.93072 0.91582 0.74598 0.87028 0.87363 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 14.32 67.78 0.97 -1.88 16 2 C -0.16 -2.24 9.52 25.65 0.24 -2.00 16 3 C -0.08 -1.25 4.95 29.85 0.15 -1.10 16 4 C -0.13 -1.94 5.68 29.85 0.17 -1.77 16 5 C 0.51 9.98 7.83 87.66 0.69 10.67 16 6 O -0.58 -15.86 15.64 -3.03 -0.05 -15.91 16 7 N -0.72 -11.20 4.35 -438.53 -1.91 -13.11 16 8 C 0.15 2.21 3.12 45.83 0.14 2.35 16 9 H 0.08 1.44 7.57 -2.39 -0.02 1.42 16 10 C -0.13 -1.64 6.62 31.44 0.21 -1.43 16 11 C -0.12 -1.05 6.82 31.67 0.22 -0.84 16 12 C -0.12 -1.13 6.01 31.89 0.19 -0.94 16 13 C -0.10 -1.21 2.89 -9.72 -0.03 -1.24 16 14 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 15 C 0.13 2.47 4.28 86.38 0.37 2.84 16 16 N -0.71 -15.36 5.40 -463.07 -2.50 -17.86 16 17 C 0.53 18.23 7.85 87.66 0.69 18.92 16 18 O -0.56 -24.71 15.86 -3.04 -0.05 -24.75 16 19 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 20 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 21 C -0.54 -30.48 9.50 67.96 0.65 -29.84 16 22 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -55.39 13.22 21.65 0.29 -55.11 16 25 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 26 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H 0.11 1.29 8.06 -2.91 -0.02 1.26 16 30 H 0.09 1.38 7.84 -2.91 -0.02 1.36 16 31 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.06 1.12 7.75 -2.39 -0.02 1.10 16 33 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 5.28 6.47 -92.71 -0.60 4.68 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.91 7.93 -2.38 -0.02 0.89 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.75 8.02 -2.39 -0.02 0.73 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.25 6.26 -2.39 -0.01 1.23 16 45 H 0.42 6.15 8.32 -92.70 -0.77 5.37 16 46 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 47 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 48 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -79.46 408.85 1.79 -77.68 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.42 Total: 23.05 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.56 Total: -9.57 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -4.12 Total: -86.08 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.10 Total: -40.66 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -79.46 1.79 -77.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721726604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.910 kcal (2) G-P(sol) polarization free energy of solvation -79.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds