Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00052 * 2 1 4 4 C 1.53006 * 109.46737 * 125.00040 * 3 2 1 5 5 C 1.50699 * 109.46737 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00062 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00108 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00371 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.06015 * 326.42209 * 8 7 5 10 10 C 1.53881 * 110.02930 * 87.83264 * 8 7 5 11 11 C 1.54263 * 106.59718 * 119.28817 * 10 8 7 12 12 C 1.54884 * 104.19816 * 336.38998 * 11 10 8 13 13 C 1.54268 * 110.03543 * 204.99953 * 8 7 5 14 14 H 1.08996 * 110.60053 * 145.59572 * 13 8 7 15 15 C 1.52999 * 110.48679 * 23.00538 * 13 8 7 16 16 N 1.46497 * 109.46992 * 178.77097 * 15 13 8 17 17 C 1.34777 * 119.99525 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.08000 * 120.00375 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99970 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.99732 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47140 * 5.00234 * 3 2 1 33 33 H 1.08999 * 109.46936 * 244.99749 * 3 2 1 34 34 H 1.08998 * 109.47147 * 60.00198 * 4 3 2 35 35 H 1.08999 * 109.47170 * 299.99566 * 4 3 2 36 36 H 0.97006 * 120.00112 * 359.97438 * 7 5 4 37 37 H 1.09001 * 110.03433 * 0.02562 * 10 8 7 38 38 H 1.08996 * 110.03152 * 238.56806 * 10 8 7 39 39 H 1.09003 * 110.48541 * 217.71223 * 11 10 8 40 40 H 1.09003 * 110.60445 * 95.12693 * 11 10 8 41 41 H 1.09004 * 110.75637 * 279.62877 * 12 11 10 42 42 H 1.08997 * 110.76224 * 156.26346 * 12 11 10 43 43 H 1.08995 * 109.46838 * 58.76985 * 15 13 8 44 44 H 1.09001 * 109.46617 * 298.77320 * 15 13 8 45 45 H 0.97000 * 120.00580 * 0.02562 * 16 15 13 46 46 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 47 47 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 48 48 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7881 2.6383 1.1821 6 8 3.5696 3.4647 0.3216 7 7 4.7051 2.8870 2.1379 8 6 5.4376 4.1557 2.1380 9 1 5.6022 4.4925 1.1144 10 6 4.6493 5.2194 2.9223 11 6 5.5493 5.6585 4.0957 12 6 6.5068 4.4600 4.3094 13 6 6.7891 3.9857 2.8622 14 1 7.5536 4.6092 2.3988 15 6 7.2199 2.5176 2.8542 16 7 8.5178 2.3860 3.5207 17 6 9.0975 1.1745 3.6335 18 8 8.5450 0.1934 3.1828 19 6 10.4355 1.0399 4.3137 20 16 10.9479 -0.6959 4.2990 21 6 12.4953 -0.5653 5.1316 22 1 12.8454 0.3977 5.4728 23 6 13.2640 -1.7002 5.3499 24 7 12.8367 -2.8743 4.9355 25 14 14.9041 -1.5619 6.2332 26 1 15.1535 -0.1432 6.5946 27 1 14.8738 -2.3893 7.4660 28 1 15.9891 -2.0429 5.3407 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 3.7400 0.5064 1.0921 35 1 2.4772 1.2355 2.1131 36 1 4.8802 2.2259 2.8259 37 1 3.7220 4.7914 3.3033 38 1 4.4315 6.0721 2.2794 39 1 4.9515 5.8334 4.9903 40 1 6.1122 6.5543 3.8331 41 1 6.0187 3.6736 4.8853 42 1 7.4269 4.7825 4.7967 43 1 7.3031 2.1691 1.8248 44 1 6.4779 1.9184 3.3819 45 1 8.9596 3.1705 3.8816 46 1 11.1745 1.6414 3.7842 47 1 10.3559 1.3865 5.3441 48 1 13.3740 -3.6674 5.0877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721726607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -77.076411 kcal Electronic energy + Delta-G solvation = -26499.192242 eV Core-core repulsion = 22679.807476 eV Total energy + Delta-G solvation = -3819.384766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63640 -39.28589 -38.27601 -35.65623 -34.48107 -33.85762 -32.45387 -31.10823 -30.74330 -28.67225 -28.13473 -25.55908 -24.86610 -24.29417 -21.28459 -20.89157 -20.25089 -20.10391 -19.89900 -17.90088 -17.50761 -16.65150 -16.18929 -16.10837 -15.82003 -15.58860 -15.23835 -14.97844 -14.82845 -14.74543 -14.16638 -14.04460 -13.83200 -13.73089 -13.16318 -12.97017 -12.83140 -12.63418 -12.46175 -12.17969 -11.89410 -11.67886 -11.48764 -11.37652 -11.32131 -11.24825 -11.09728 -11.04841 -11.04436 -10.97702 -10.77559 -10.11163 -9.83318 -9.63846 -9.46376 -9.34651 -9.10477 -8.94905 -8.26385 -6.52911 -6.24457 -3.95053 1.94738 2.40643 2.88452 3.00047 3.05251 3.19592 3.26096 3.30397 3.64095 4.13831 4.15709 4.17896 4.35466 4.43731 4.60188 4.78341 4.85729 4.92410 5.00738 5.01036 5.01923 5.06301 5.10926 5.16488 5.18394 5.28904 5.29104 5.39129 5.51042 5.55135 5.59875 5.66315 5.66632 5.76448 5.79005 5.82922 5.84213 5.87779 5.97080 6.10420 6.24126 6.32586 6.45250 6.54135 7.21030 7.57314 7.64432 7.97332 8.32790 8.55654 9.21131 10.83008 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002079 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.084328 B =13464.890619 C =15371.984475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.078 4.078 4 C -0.140 4.140 5 C 0.515 3.485 6 O -0.543 6.543 7 N -0.727 5.727 8 C 0.150 3.850 9 H 0.094 0.906 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.113 4.113 14 H 0.096 0.904 15 C 0.131 3.869 16 N -0.737 5.737 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.403 0.597 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.342 15.822 -3.950 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.116 4.116 4 C -0.180 4.180 5 C 0.302 3.698 6 O -0.420 6.420 7 N -0.381 5.381 8 C 0.045 3.955 9 H 0.112 0.888 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.159 4.159 13 C -0.133 4.133 14 H 0.114 0.886 15 C 0.007 3.993 16 N -0.392 5.392 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.400 14.575 -5.348 26.438 hybrid contribution 2.021 1.214 1.644 2.874 sum -19.379 15.789 -3.704 25.270 Atomic orbital electron populations 1.23873 0.95980 1.01850 1.01408 1.23007 0.96113 0.98485 0.99643 1.20492 0.97699 0.95376 0.98010 1.21662 0.99254 0.95749 1.01295 1.20761 0.79431 0.88894 0.80718 1.90697 1.65544 1.48372 1.37339 1.46330 1.40845 1.19946 1.30974 1.21521 0.89663 0.83778 1.00581 0.88801 1.22588 0.98883 0.98572 0.97090 1.22355 0.97567 0.98093 0.98151 1.22628 0.99836 0.98019 0.95432 1.22560 0.96940 0.96610 0.97152 0.88617 1.21198 0.85225 0.94757 0.98124 1.45981 1.21806 1.09899 1.61542 1.20319 0.86628 0.82401 0.78876 1.90701 1.64413 1.37187 1.46877 1.23532 0.95888 1.08351 1.02669 1.85392 1.23878 0.97464 1.76660 1.22907 1.05402 0.96794 1.43241 0.90870 1.25000 0.98574 0.94494 0.95570 1.70027 1.37821 0.98457 1.43960 0.86112 0.81940 0.78320 0.79092 1.19621 1.20557 1.20557 0.88472 0.88626 0.87118 0.90861 0.90156 0.88293 0.88747 0.75969 0.91179 0.91058 0.91419 0.91321 0.90937 0.90876 0.91340 0.91891 0.76784 0.89230 0.89233 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 14.32 29.01 0.42 -0.92 16 2 C -0.15 -1.13 9.52 -36.03 -0.34 -1.47 16 3 C -0.08 -0.64 4.95 -27.88 -0.14 -0.77 16 4 C -0.14 -1.04 5.68 -27.88 -0.16 -1.20 16 5 C 0.51 5.01 7.83 -10.99 -0.09 4.92 16 6 O -0.54 -7.16 15.64 5.56 0.09 -7.08 16 7 N -0.73 -5.88 4.34 -52.72 -0.23 -6.11 16 8 C 0.15 1.19 3.12 -66.81 -0.21 0.98 16 9 H 0.09 0.89 7.57 -51.93 -0.39 0.50 16 10 C -0.13 -0.94 6.59 -25.61 -0.17 -1.11 16 11 C -0.12 -0.74 6.83 -25.08 -0.17 -0.91 16 12 C -0.12 -0.77 6.01 -24.74 -0.15 -0.92 16 13 C -0.11 -0.82 2.89 -88.96 -0.26 -1.07 16 14 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 15 C 0.13 1.33 4.28 -4.04 -0.02 1.31 16 16 N -0.74 -8.84 5.40 -60.30 -0.33 -9.16 16 17 C 0.53 9.37 7.85 -10.98 -0.09 9.29 16 18 O -0.52 -11.21 15.86 5.55 0.09 -11.12 16 19 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 22 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 25 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 31 H 0.11 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 33 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.81 6.47 -40.82 -0.26 2.55 16 37 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.64 6.26 -51.93 -0.33 0.31 16 45 H 0.40 3.66 8.32 -40.82 -0.34 3.32 16 46 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 47 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 408.82 15.07 6.16 6.16 Total: -1.00 -35.35 408.82 -9.67 -45.02 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.00 Total: 2.55 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.95 Total: -7.42 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.18 Total: -40.44 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.35 -9.67 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721726607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.060 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds