Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00052 * 2 1 4 4 C 1.53006 * 109.46737 * 125.00040 * 3 2 1 5 5 C 1.50699 * 109.46737 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00062 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00108 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00371 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.06015 * 326.42209 * 8 7 5 10 10 C 1.53881 * 110.02930 * 87.83264 * 8 7 5 11 11 C 1.54263 * 106.59718 * 119.28817 * 10 8 7 12 12 C 1.54884 * 104.19816 * 336.38998 * 11 10 8 13 13 C 1.54268 * 110.03543 * 204.99953 * 8 7 5 14 14 H 1.08996 * 110.60053 * 145.59572 * 13 8 7 15 15 C 1.52999 * 110.48679 * 23.00538 * 13 8 7 16 16 N 1.46497 * 109.46992 * 178.77097 * 15 13 8 17 17 C 1.34777 * 119.99525 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.08000 * 120.00375 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99970 * 359.97438 * 1 2 3 31 31 H 1.08008 * 119.99732 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47140 * 5.00234 * 3 2 1 33 33 H 1.08999 * 109.46936 * 244.99749 * 3 2 1 34 34 H 1.08998 * 109.47147 * 60.00198 * 4 3 2 35 35 H 1.08999 * 109.47170 * 299.99566 * 4 3 2 36 36 H 0.97006 * 120.00112 * 359.97438 * 7 5 4 37 37 H 1.09001 * 110.03433 * 0.02562 * 10 8 7 38 38 H 1.08996 * 110.03152 * 238.56806 * 10 8 7 39 39 H 1.09003 * 110.48541 * 217.71223 * 11 10 8 40 40 H 1.09003 * 110.60445 * 95.12693 * 11 10 8 41 41 H 1.09004 * 110.75637 * 279.62877 * 12 11 10 42 42 H 1.08997 * 110.76224 * 156.26346 * 12 11 10 43 43 H 1.08995 * 109.46838 * 58.76985 * 15 13 8 44 44 H 1.09001 * 109.46617 * 298.77320 * 15 13 8 45 45 H 0.97000 * 120.00580 * 0.02562 * 16 15 13 46 46 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 47 47 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 48 48 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7881 2.6383 1.1821 6 8 3.5696 3.4647 0.3216 7 7 4.7051 2.8870 2.1379 8 6 5.4376 4.1557 2.1380 9 1 5.6022 4.4925 1.1144 10 6 4.6493 5.2194 2.9223 11 6 5.5493 5.6585 4.0957 12 6 6.5068 4.4600 4.3094 13 6 6.7891 3.9857 2.8622 14 1 7.5536 4.6092 2.3988 15 6 7.2199 2.5176 2.8542 16 7 8.5178 2.3860 3.5207 17 6 9.0975 1.1745 3.6335 18 8 8.5450 0.1934 3.1828 19 6 10.4355 1.0399 4.3137 20 16 10.9479 -0.6959 4.2990 21 6 12.4953 -0.5653 5.1316 22 1 12.8454 0.3977 5.4728 23 6 13.2640 -1.7002 5.3499 24 7 12.8367 -2.8743 4.9355 25 14 14.9041 -1.5619 6.2332 26 1 15.1535 -0.1432 6.5946 27 1 14.8738 -2.3893 7.4660 28 1 15.9891 -2.0429 5.3407 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 3.7400 0.5064 1.0921 35 1 2.4772 1.2355 2.1131 36 1 4.8802 2.2259 2.8259 37 1 3.7220 4.7914 3.3033 38 1 4.4315 6.0721 2.2794 39 1 4.9515 5.8334 4.9903 40 1 6.1122 6.5543 3.8331 41 1 6.0187 3.6736 4.8853 42 1 7.4269 4.7825 4.7967 43 1 7.3031 2.1691 1.8248 44 1 6.4779 1.9184 3.3819 45 1 8.9596 3.1705 3.8816 46 1 11.1745 1.6414 3.7842 47 1 10.3559 1.3865 5.3441 48 1 13.3740 -3.6674 5.0877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721726607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -100.502349 kcal Electronic energy + Delta-G solvation = -26500.208067 eV Core-core repulsion = 22679.807476 eV Total energy + Delta-G solvation = -3820.400591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41669 -40.49831 -39.13591 -36.29256 -35.61850 -34.58371 -34.56897 -31.93015 -31.69057 -29.84715 -28.73930 -27.66570 -25.66106 -25.04099 -22.17735 -21.50596 -21.33237 -20.74093 -20.61775 -19.78540 -18.29605 -17.84976 -17.24352 -16.92465 -16.87148 -16.68975 -16.63673 -16.09602 -15.86933 -15.59113 -15.46822 -14.96378 -14.77991 -14.61077 -14.43136 -14.34917 -13.78935 -13.51057 -13.30832 -13.14808 -13.09301 -12.91254 -12.84329 -12.59945 -12.33264 -12.03189 -12.00965 -11.92992 -11.90547 -11.74229 -11.68739 -11.48442 -11.15191 -10.93341 -10.90935 -10.25438 -10.23162 -10.10787 -10.07221 -8.64946 -8.34190 -6.11521 1.28415 1.38122 1.41862 1.48361 1.59001 1.63426 1.63882 2.19439 2.27339 2.32848 3.00173 3.31779 3.48393 3.53058 3.71189 3.78524 3.98153 4.02646 4.16712 4.24209 4.26403 4.33473 4.36753 4.42814 4.44989 4.47794 4.54140 4.57809 4.68647 4.70165 4.76128 4.86607 4.91639 5.06680 5.07133 5.11861 5.20144 5.23943 5.27336 5.39724 5.43278 5.48160 5.57209 5.75972 5.88822 6.20876 6.49750 6.52789 7.07610 7.23247 7.26610 8.75125 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002079 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.084328 B =13464.890619 C =15371.984475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C -0.075 4.075 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.582 6.582 7 N -0.720 5.720 8 C 0.148 3.852 9 H 0.077 0.923 10 C -0.129 4.129 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.099 4.099 14 H 0.109 0.891 15 C 0.132 3.868 16 N -0.709 5.709 17 C 0.534 3.466 18 O -0.564 6.564 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.256 1.256 27 H -0.274 1.274 28 H -0.275 1.275 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.410 0.590 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.417 0.583 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.831 17.752 -2.367 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.181 4.181 3 C -0.113 4.113 4 C -0.175 4.175 5 C 0.300 3.700 6 O -0.462 6.462 7 N -0.373 5.373 8 C 0.043 3.957 9 H 0.095 0.905 10 C -0.168 4.168 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.119 4.119 14 H 0.127 0.873 15 C 0.008 3.992 16 N -0.363 5.363 17 C 0.319 3.681 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.076 5.924 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.180 1.180 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.254 0.746 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.891 16.564 -3.737 26.921 hybrid contribution 1.750 0.713 1.101 2.187 sum -19.141 17.277 -2.636 25.920 Atomic orbital electron populations 1.24035 0.95905 1.02543 1.00401 1.23016 0.96356 0.98201 1.00542 1.20420 0.97568 0.95667 0.97631 1.21679 0.99230 0.94640 1.01909 1.21165 0.79425 0.89202 0.80254 1.90677 1.66874 1.49768 1.38893 1.46308 1.40199 1.20176 1.30621 1.21549 0.90243 0.83966 0.99970 0.90518 1.22534 0.98809 0.97989 0.97433 1.22316 0.97248 0.98179 0.97668 1.22638 1.00559 0.98074 0.94365 1.22475 0.96646 0.94570 0.98172 0.87310 1.21304 0.84116 0.96886 0.96924 1.45682 1.21995 1.08639 1.60000 1.20033 0.86045 0.83391 0.78587 1.90694 1.65363 1.39131 1.49076 1.23380 0.97351 1.02794 1.04651 1.85565 1.24789 1.04961 1.77132 1.23243 1.05547 0.97400 1.43077 0.89877 1.26122 1.02850 0.93977 0.96295 1.70188 1.39657 0.99434 1.45499 0.84914 0.76399 0.79062 0.77632 1.17978 1.19962 1.20078 0.87300 0.88456 0.86443 0.91761 0.91721 0.87437 0.86807 0.75162 0.91757 0.91467 0.90735 0.90350 0.91215 0.89520 0.93003 0.91595 0.74604 0.87356 0.87057 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 67.78 0.97 -1.51 16 2 C -0.16 -2.32 9.52 25.65 0.24 -2.07 16 3 C -0.08 -1.25 4.95 29.85 0.15 -1.10 16 4 C -0.13 -1.96 5.68 29.85 0.17 -1.79 16 5 C 0.51 10.00 7.83 87.66 0.69 10.69 16 6 O -0.58 -15.86 15.64 -3.04 -0.05 -15.91 16 7 N -0.72 -11.22 4.34 -439.09 -1.91 -13.13 16 8 C 0.15 2.21 3.12 45.72 0.14 2.35 16 9 H 0.08 1.45 7.57 -2.39 -0.02 1.43 16 10 C -0.13 -1.66 6.59 31.32 0.21 -1.45 16 11 C -0.12 -1.06 6.83 31.67 0.22 -0.85 16 12 C -0.12 -1.14 6.01 31.88 0.19 -0.95 16 13 C -0.10 -1.21 2.89 -9.72 -0.03 -1.24 16 14 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 15 C 0.13 2.45 4.28 86.38 0.37 2.82 16 16 N -0.71 -15.30 5.40 -463.07 -2.50 -17.80 16 17 C 0.53 18.18 7.85 87.66 0.69 18.87 16 18 O -0.56 -24.60 15.86 -3.04 -0.05 -24.64 16 19 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 20 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 21 C -0.54 -30.52 9.50 67.95 0.65 -29.87 16 22 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 23 C 0.01 0.69 5.49 84.86 0.47 1.15 16 24 N -0.91 -55.34 13.22 21.65 0.29 -55.06 16 25 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 29 H 0.11 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.10 1.20 7.84 -2.91 -0.02 1.18 16 31 H 0.12 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16 33 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.41 5.30 6.47 -92.70 -0.60 4.70 16 37 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.75 8.02 -2.39 -0.02 0.73 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.24 6.26 -2.39 -0.01 1.22 16 45 H 0.42 6.12 8.32 -92.71 -0.77 5.35 16 46 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 47 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 48 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.15 408.82 1.79 -77.36 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.42 Total: 22.95 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.55 Total: -9.39 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.12 Total: -85.98 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.10 Total: -40.56 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -79.15 1.79 -77.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721726607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.142 kcal (2) G-P(sol) polarization free energy of solvation -79.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds