Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47176 * 2 1 4 4 C 1.33000 * 119.99831 * 82.77748 * 3 2 1 5 5 C 1.47106 * 119.99760 * 353.67401 * 4 3 2 6 6 O 1.21606 * 119.99973 * 1.89818 * 5 4 3 7 7 N 1.34777 * 119.99361 * 181.89579 * 5 4 3 8 8 C 1.46505 * 119.99413 * 185.23376 * 7 5 4 9 9 C 1.52993 * 115.55234 * 65.35997 * 8 7 5 10 10 N 1.46503 * 109.47570 * 30.60174 * 9 8 7 11 11 C 1.34775 * 120.00304 * 184.98449 * 10 9 8 12 12 O 1.21283 * 119.99941 * 355.20696 * 11 10 9 13 13 C 1.50696 * 119.99974 * 175.21309 * 11 10 9 14 14 S 1.81000 * 109.46957 * 185.15740 * 13 11 10 15 15 C 1.76208 * 99.99813 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00046 * 359.97438 * 15 14 13 17 17 C 1.38801 * 119.99935 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99715 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00070 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47260 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47461 * 120.00016 * 19 17 15 22 22 H 1.48503 * 109.47461 * 240.00190 * 19 17 15 23 23 C 1.53003 * 117.49380 * 211.02410 * 8 7 5 24 24 C 1.53003 * 117.49569 * 279.68329 * 8 7 5 25 25 C 1.50699 * 120.00195 * 262.77166 * 3 2 1 26 26 C 1.52999 * 109.47155 * 275.00139 * 25 3 2 27 27 H 1.09004 * 109.46564 * 305.24336 * 1 2 3 28 28 H 1.09003 * 109.46992 * 65.24067 * 1 2 3 29 29 H 1.08991 * 109.47134 * 185.24321 * 1 2 3 30 30 H 1.08995 * 109.47447 * 240.00353 * 2 1 3 31 31 H 1.09000 * 109.47490 * 119.99701 * 2 1 3 32 32 H 1.07999 * 119.99871 * 173.68405 * 4 3 2 33 33 H 0.97003 * 120.00499 * 5.22668 * 7 5 4 34 34 H 1.09004 * 109.47208 * 270.60065 * 9 8 7 35 35 H 1.09001 * 109.47442 * 150.60745 * 9 8 7 36 36 H 0.97003 * 119.99630 * 5.25856 * 10 9 8 37 37 H 1.09000 * 109.47443 * 305.15898 * 13 11 10 38 38 H 1.09002 * 109.47055 * 65.15499 * 13 11 10 39 39 H 0.96998 * 119.99896 * 179.97438 * 18 17 15 40 40 H 1.08994 * 117.49870 * 214.99889 * 23 8 7 41 41 H 1.08996 * 117.50229 * 0.03078 * 23 8 7 42 42 H 1.08996 * 117.49821 * 359.97438 * 24 8 7 43 43 H 1.08999 * 117.49631 * 144.97829 * 24 8 7 44 44 H 1.09006 * 109.46778 * 35.00330 * 25 3 2 45 45 H 1.09003 * 109.47060 * 154.99884 * 25 3 2 46 46 H 1.08992 * 109.46900 * 60.00036 * 26 25 3 47 47 H 1.09005 * 109.46750 * 179.97438 * 26 25 3 48 48 H 1.08994 * 109.47011 * 299.99911 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1175 2.0961 1.1427 5 6 1.5927 1.5085 2.3850 6 8 1.1123 0.3914 2.3737 7 7 1.6444 2.2084 3.5357 8 6 1.2282 1.5822 4.7931 9 6 2.0950 0.4141 5.2672 10 7 3.4757 0.6180 4.8215 11 6 4.4017 -0.3370 5.0379 12 8 4.1142 -1.3266 5.6774 13 6 5.7944 -0.1750 4.4855 14 16 6.7506 -1.6772 4.8101 15 6 8.2893 -1.2238 4.0809 16 1 8.4030 -0.2545 3.6185 17 6 9.3553 -2.1126 4.1007 18 7 9.2168 -3.2939 4.6648 19 14 10.9862 -1.6324 3.3271 20 1 10.8825 -0.2623 2.7636 21 1 12.0525 -1.6638 4.3601 22 1 11.3202 -2.5894 2.2418 23 6 0.6151 2.4871 5.8637 24 6 -0.2722 1.5126 5.0849 25 6 2.4383 2.0766 -1.2947 26 6 3.8909 1.7180 -1.6144 27 1 -0.3632 0.5931 0.8394 28 1 -0.3633 0.4304 -0.9332 29 1 -0.3633 -1.0233 0.0939 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5717 3.0757 1.1585 33 1 1.9572 3.1265 3.5313 34 1 1.7117 -0.5163 4.8483 35 1 2.0687 0.3604 6.3556 36 1 3.7241 1.4421 4.3742 37 1 5.7412 -0.0034 3.4104 38 1 6.2791 0.6751 4.9655 39 1 9.9616 -3.9151 4.6783 40 1 0.8292 2.2501 6.9058 41 1 0.5209 3.5480 5.6324 42 1 -0.9494 1.9331 4.3415 43 1 -0.6417 0.6344 5.6143 44 1 1.7917 1.7246 -2.0986 45 1 2.3436 3.1583 -1.1995 46 1 3.9856 0.6363 -1.7096 47 1 4.1844 2.1919 -2.5512 48 1 4.5374 2.0699 -0.8106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722056484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -63.892629 kcal Electronic energy + Delta-G solvation = -27561.652570 eV Core-core repulsion = 23742.839496 eV Total energy + Delta-G solvation = -3818.813074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40901 -40.44596 -38.92704 -37.08439 -35.27535 -34.59294 -34.04318 -32.78831 -31.32721 -30.69699 -27.88959 -27.30928 -25.80158 -24.15162 -23.58632 -22.71159 -21.81008 -20.82485 -19.86315 -19.45590 -18.10782 -17.87805 -17.76535 -16.89397 -16.71981 -16.48747 -16.05066 -15.95226 -15.66986 -15.54687 -15.23133 -14.77209 -14.70061 -14.61036 -14.41748 -14.37194 -13.68376 -13.54483 -13.45555 -13.33429 -13.17343 -12.98387 -12.91779 -12.61371 -12.59003 -12.41607 -12.17698 -12.03020 -11.80467 -11.71479 -11.60312 -11.26315 -11.16679 -11.01296 -10.43813 -10.29790 -10.22257 -10.08044 -9.83219 -8.68857 -8.35504 -6.14309 0.43967 1.23669 1.41191 1.44193 1.55055 1.60138 2.02372 2.25865 2.30302 2.35856 2.73854 2.98798 3.30399 3.50987 3.75024 3.79865 3.83799 3.89072 4.02828 4.21432 4.23347 4.31671 4.40601 4.43164 4.43797 4.52584 4.60275 4.61369 4.68453 4.70446 4.75130 4.78315 4.96215 4.98481 5.02601 5.08719 5.19361 5.22920 5.31118 5.35100 5.37994 5.40882 5.54657 5.66954 5.68699 6.19124 6.43380 6.65612 7.05527 7.18108 7.39785 8.74214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.003243 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.308055 B = 8631.560253 C =10767.446178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.022 4.022 4 C -0.238 4.238 5 C 0.538 3.462 6 O -0.554 6.554 7 N -0.689 5.689 8 C 0.075 3.925 9 C 0.158 3.842 10 N -0.704 5.704 11 C 0.532 3.468 12 O -0.566 6.566 13 C -0.125 4.125 14 S -0.151 6.151 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.255 1.255 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.136 4.136 24 C -0.166 4.166 25 C -0.090 4.090 26 C -0.150 4.150 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.419 0.581 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.411 0.589 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 21.460 -9.176 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C -0.023 4.023 4 C -0.259 4.259 5 C 0.330 3.670 6 O -0.433 6.433 7 N -0.342 5.342 8 C -0.013 4.013 9 C 0.033 3.967 10 N -0.358 5.358 11 C 0.318 3.682 12 O -0.444 6.444 13 C -0.277 4.277 14 S 0.076 5.924 15 C -0.693 4.693 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.179 1.179 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.173 4.173 24 C -0.205 4.205 25 C -0.127 4.127 26 C -0.207 4.207 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.257 0.743 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.697 18.852 -8.167 28.462 hybrid contribution 1.537 1.299 -0.956 2.228 sum -18.160 20.152 -9.123 28.620 Atomic orbital electron populations 1.21444 0.93874 1.01336 1.01080 1.20867 0.97301 0.93794 1.02139 1.22762 0.89448 0.94573 0.95560 1.22508 1.08478 1.03634 0.91253 1.19033 0.78432 0.85024 0.84549 1.90785 1.45578 1.20713 1.86259 1.45132 1.67683 1.16888 1.04510 1.20583 0.95083 0.97988 0.87687 1.20975 0.79857 0.96912 0.98959 1.45524 1.08668 1.20213 1.61368 1.20113 0.86491 0.82567 0.79058 1.90686 1.81236 1.31524 1.40997 1.23321 0.95250 1.04366 1.04731 1.85621 1.09855 1.19554 1.77330 1.23230 0.97566 1.05205 1.43330 0.89868 1.26150 1.03290 0.94204 0.95476 1.70198 1.33561 1.08049 1.43035 0.84889 0.76148 0.78936 0.77868 1.17867 1.19807 1.19940 1.23581 0.99248 0.98006 0.96441 1.23343 0.91583 1.02400 1.03126 1.20797 0.97349 1.01221 0.93370 1.21741 0.95072 1.01517 1.02388 0.93262 0.92092 0.93638 0.91723 0.91404 0.82561 0.74311 0.93741 0.90473 0.75194 0.87971 0.86966 0.91973 0.86591 0.85551 0.88057 0.88290 0.89604 0.88685 0.93636 0.90569 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.20 71.98 0.66 -1.91 16 2 C -0.10 -2.38 5.36 29.85 0.16 -2.22 16 3 C -0.02 -0.38 4.62 -17.61 -0.08 -0.46 16 4 C -0.24 -3.90 9.61 23.43 0.23 -3.67 16 5 C 0.54 11.32 7.20 86.57 0.62 11.94 16 6 O -0.55 -16.23 10.91 -4.05 -0.04 -16.27 16 7 N -0.69 -10.20 4.26 -426.47 -1.82 -12.02 16 8 C 0.07 1.30 2.04 3.60 0.01 1.30 16 9 C 0.16 4.15 5.42 86.38 0.47 4.62 16 10 N -0.70 -20.10 5.33 -463.06 -2.47 -22.56 16 11 C 0.53 21.30 7.84 87.66 0.69 21.99 16 12 O -0.57 -28.14 15.88 -3.04 -0.05 -28.19 16 13 C -0.13 -5.25 6.16 71.23 0.44 -4.81 16 14 S -0.15 -8.64 20.58 -56.49 -1.16 -9.80 16 15 C -0.55 -31.65 9.50 67.95 0.65 -31.00 16 16 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -56.79 13.22 21.65 0.29 -56.50 16 19 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.14 -1.41 10.11 30.62 0.31 -1.10 16 24 C -0.17 -2.53 10.18 30.62 0.31 -2.21 16 25 C -0.09 -1.09 6.07 29.85 0.18 -0.91 16 26 C -0.15 -2.06 9.89 71.98 0.71 -1.35 16 27 H 0.05 1.17 6.37 -2.38 -0.02 1.16 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.07 2.09 5.95 -2.39 -0.01 2.07 16 32 H 0.16 1.47 8.05 -2.91 -0.02 1.45 16 33 H 0.42 3.19 8.82 -92.71 -0.82 2.37 16 34 H 0.04 1.50 8.09 -2.38 -0.02 1.49 16 35 H 0.08 1.96 7.88 -2.39 -0.02 1.94 16 36 H 0.41 9.06 7.62 -92.71 -0.71 8.35 16 37 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 38 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 39 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.12 1.11 8.03 -2.39 -0.02 1.09 16 41 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.09 0.77 8.03 -2.39 -0.02 0.76 16 46 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -83.17 412.33 2.04 -81.14 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.56 Total: 26.87 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.82 Total: -8.56 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.00 Total: -91.08 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.09 Total: -44.46 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -83.17 2.04 -81.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722056484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.247 kcal (2) G-P(sol) polarization free energy of solvation -83.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds