Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50694 * 120.00510 * 2 1 4 4 C 1.33002 * 119.99432 * 179.97438 * 2 1 3 5 5 C 1.47103 * 120.00129 * 0.02562 * 4 2 1 6 6 O 1.21609 * 119.99934 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99741 * 179.97438 * 5 4 2 8 8 C 1.48144 * 127.84197 * 359.97438 * 7 5 4 9 9 C 1.54386 * 104.62005 * 219.60370 * 8 7 5 10 10 H 1.09002 * 110.34435 * 217.26232 * 9 8 7 11 11 N 1.46496 * 110.43229 * 95.04759 * 9 8 7 12 12 C 1.34783 * 120.00127 * 87.93685 * 11 9 8 13 13 O 1.21276 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99972 * 180.02562 * 12 11 9 15 15 S 1.81001 * 109.46683 * 180.02562 * 14 12 11 16 16 C 1.76209 * 99.99756 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99702 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00291 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46772 * 60.00382 * 20 18 16 22 22 H 1.48497 * 109.46991 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47287 * 299.99932 * 20 18 16 24 24 C 1.54281 * 104.96065 * 336.13450 * 9 8 7 25 25 C 1.52999 * 110.34787 * 118.86855 * 24 9 8 26 26 C 1.53006 * 110.34387 * 241.13090 * 24 9 8 27 27 C 1.48154 * 127.83692 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.47228 * 240.00346 * 1 2 3 29 29 H 1.09003 * 109.46750 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47676 * 119.99906 * 1 2 3 31 31 H 1.09000 * 109.47304 * 269.99954 * 3 2 1 32 32 H 1.08999 * 109.47107 * 30.00204 * 3 2 1 33 33 H 1.09000 * 109.47076 * 150.00419 * 3 2 1 34 34 H 1.08005 * 119.99684 * 179.97438 * 4 2 1 35 35 H 1.08999 * 110.40697 * 100.81942 * 8 7 5 36 36 H 1.08998 * 110.40769 * 338.39232 * 8 7 5 37 37 H 0.97003 * 120.00318 * 267.94439 * 11 9 8 38 38 H 1.09000 * 109.46621 * 299.99502 * 14 12 11 39 39 H 1.08995 * 109.47543 * 59.99870 * 14 12 11 40 40 H 0.96996 * 120.00642 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46997 * 59.99679 * 25 24 9 42 42 H 1.09004 * 109.47417 * 180.02562 * 25 24 9 43 43 H 1.09005 * 109.46950 * 300.00147 * 25 24 9 44 44 H 1.08996 * 109.47126 * 59.99440 * 26 24 9 45 45 H 1.08995 * 109.47333 * 180.02562 * 26 24 9 46 46 H 1.09000 * 109.46800 * 299.99898 * 26 24 9 47 47 H 1.09000 * 110.40147 * 21.60948 * 27 7 5 48 48 H 1.09000 * 110.40322 * 259.18172 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1519 0.0005 5 6 1.4363 -2.4258 0.0005 6 8 0.2202 -2.4257 0.0005 7 7 2.1101 -3.5930 0.0005 8 6 3.5777 -3.7951 0.0000 9 6 3.8063 -4.9887 -0.9521 10 1 4.6101 -5.6231 -0.5784 11 7 4.1195 -4.5135 -2.3020 12 6 5.3962 -4.2494 -2.6441 13 8 6.2855 -4.4049 -1.8344 14 6 5.7184 -3.7600 -4.0326 15 16 7.5032 -3.4987 -4.1810 16 6 7.5936 -2.9461 -5.8518 17 1 6.6932 -2.8625 -6.4423 18 6 8.8219 -2.6182 -6.4088 19 7 9.9192 -2.7196 -5.6890 20 14 8.9177 -2.0330 -8.1802 21 1 8.1110 -0.7962 -8.3372 22 1 10.3323 -1.7498 -8.5321 23 1 8.3861 -3.0883 -9.0797 24 6 2.4701 -5.7601 -0.9518 25 6 1.8746 -5.7933 -2.3608 26 6 2.6770 -7.1823 -0.4269 27 6 1.5512 -4.9650 0.0010 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 2.4423 1.6196 -1.0277 32 1 1.6716 2.0647 0.5139 33 1 3.2130 1.1745 0.5138 34 1 3.2519 -1.1519 0.0001 35 1 3.9284 -4.0368 1.0033 36 1 4.0837 -2.9062 -0.3766 37 1 3.4082 -4.3887 -2.9496 38 1 5.3983 -4.5030 -4.7630 39 1 5.1967 -2.8209 -4.2170 40 1 10.7776 -2.4909 -6.0783 41 1 2.5708 -6.2884 -3.0378 42 1 0.9321 -6.3405 -2.3441 43 1 1.6967 -4.7741 -2.7041 44 1 3.0640 -7.1411 0.5912 45 1 1.7255 -7.7139 -0.4332 46 1 3.3891 -7.7051 -1.0654 47 1 0.5280 -4.9586 -0.3748 48 1 1.5858 -5.3891 1.0046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001726130449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -55.100602 kcal Electronic energy + Delta-G solvation = -27758.614444 eV Core-core repulsion = 23940.182620 eV Total energy + Delta-G solvation = -3818.431824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87135 -39.33629 -38.09344 -35.55673 -34.28061 -33.38467 -32.45063 -30.07252 -28.89222 -28.31719 -27.93997 -27.27684 -26.05685 -25.50014 -23.37447 -20.86236 -20.13537 -19.59083 -18.09834 -17.88249 -17.39034 -16.63492 -16.33672 -15.88696 -15.26319 -14.92477 -14.82416 -14.53636 -14.42741 -14.24818 -14.01061 -13.76041 -13.68374 -13.24079 -13.10780 -12.91588 -12.70411 -12.56691 -12.47322 -12.44610 -12.28132 -12.05181 -11.91166 -11.82014 -11.69167 -11.29042 -11.16878 -11.06522 -11.05575 -10.96287 -10.77730 -9.84785 -9.74731 -9.47513 -9.41063 -9.15242 -9.07429 -8.63635 -8.27336 -6.52643 -6.23866 -3.94658 1.19824 2.77714 2.98796 3.00774 3.14826 3.21926 3.26018 3.29284 3.66944 4.00726 4.18486 4.29116 4.46456 4.56355 4.63262 4.81577 4.89436 4.95315 5.11252 5.11985 5.15486 5.20694 5.28418 5.31287 5.35321 5.41039 5.44000 5.48533 5.51689 5.55189 5.60440 5.63140 5.67168 5.69627 5.79503 5.83676 5.85475 5.89535 5.97740 6.10054 6.11399 6.30762 6.35183 6.59555 7.38209 7.57124 7.64368 8.05630 8.32799 8.54742 9.21529 10.83464 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.002941 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.973961 B = 9517.914304 C =11257.521976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.030 4.030 3 C -0.129 4.129 4 C -0.236 4.236 5 C 0.570 3.430 6 O -0.546 6.546 7 N -0.620 5.620 8 C 0.089 3.911 9 C 0.142 3.858 10 H 0.109 0.891 11 N -0.731 5.731 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.085 4.085 25 C -0.143 4.143 26 C -0.137 4.137 27 C 0.114 3.886 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.261 -1.605 12.432 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.032 4.032 3 C -0.185 4.185 4 C -0.256 4.256 5 C 0.363 3.637 6 O -0.427 6.427 7 N -0.353 5.353 8 C -0.036 4.036 9 C 0.035 3.965 10 H 0.126 0.874 11 N -0.388 5.388 12 C 0.318 3.682 13 O -0.390 6.390 14 C -0.305 4.305 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.087 4.087 25 C -0.200 4.200 26 C -0.195 4.195 27 C -0.008 4.008 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.238 0.762 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.263 -1.737 13.786 22.948 hybrid contribution -1.038 0.582 -2.413 2.690 sum -19.300 -1.154 11.374 22.432 Atomic orbital electron populations 1.21046 0.90845 1.01063 1.04226 1.22601 0.96834 0.94551 0.89245 1.21042 1.00154 0.94071 1.03243 1.22358 1.00317 0.91527 1.11446 1.18160 0.86619 0.82969 0.75910 1.90766 1.13520 1.87068 1.51301 1.48831 1.07743 1.05300 1.73460 1.22967 0.80548 0.99952 1.00103 1.21864 0.96918 0.94323 0.83399 0.87360 1.46341 1.08916 1.69802 1.13747 1.20360 0.81835 0.76385 0.89579 1.90699 1.45996 1.50428 1.51928 1.23538 1.07895 1.03681 0.95387 1.85363 0.94319 1.86555 1.16877 1.22831 0.96110 1.51859 0.97720 0.91006 1.24979 0.94680 0.95028 0.98794 1.69998 0.98321 1.45381 1.36595 0.86236 0.77353 0.79209 0.82789 1.19930 1.20793 1.19931 1.21774 0.94352 0.95904 0.96653 1.21839 1.01095 1.02005 0.95104 1.21845 1.02329 0.93933 1.01365 1.22442 0.98322 0.81015 0.99069 0.90031 0.92929 0.90006 0.90023 0.90970 0.90922 0.85564 0.90021 0.89332 0.76208 0.89276 0.89326 0.92109 0.91340 0.91793 0.92308 0.91940 0.91942 0.91634 0.89634 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.33 36.01 0.30 -0.85 16 2 C -0.03 -0.30 6.11 -101.17 -0.62 -0.92 16 3 C -0.13 -0.99 9.98 36.00 0.36 -0.63 16 4 C -0.24 -2.63 9.15 -37.80 -0.35 -2.97 16 5 C 0.57 7.16 7.83 -12.67 -0.10 7.06 16 6 O -0.55 -7.99 13.34 5.27 0.07 -7.92 16 7 N -0.62 -6.69 3.32 -170.68 -0.57 -7.26 16 8 C 0.09 0.93 6.59 -2.41 -0.02 0.92 16 9 C 0.14 1.52 3.01 -66.54 -0.20 1.32 16 10 H 0.11 1.28 7.17 -51.93 -0.37 0.91 16 11 N -0.73 -9.22 4.56 -52.45 -0.24 -9.45 16 12 C 0.53 9.29 7.85 -10.98 -0.09 9.21 16 13 O -0.52 -10.85 15.54 5.56 0.09 -10.76 16 14 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.09 -0.71 1.03 -153.09 -0.16 -0.87 16 25 C -0.14 -1.16 7.09 37.16 0.26 -0.90 16 26 C -0.14 -0.95 8.26 37.16 0.31 -0.64 16 27 C 0.11 1.03 6.14 -2.39 -0.01 1.02 16 28 H 0.08 0.90 7.22 -51.93 -0.37 0.53 16 29 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 30 H 0.08 0.93 7.22 -51.93 -0.37 0.56 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 33 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.13 1.32 6.73 -52.48 -0.35 0.97 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.05 6.61 -51.93 -0.34 0.71 16 37 H 0.40 4.40 5.85 -40.82 -0.24 4.16 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 0.58 7.74 -51.93 -0.40 0.17 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.52 7.00 -51.93 -0.36 0.16 16 44 H 0.06 0.40 8.10 -51.93 -0.42 -0.03 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.83 7.60 -51.93 -0.39 0.44 16 48 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -34.17 400.18 -8.81 -42.97 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.80 Total: 2.94 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 0.11 Total: -3.85 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.07 Total: -41.82 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.16 Total: -18.69 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.17 -8.81 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726130449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.129 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds