Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50694 * 120.00510 * 2 1 4 4 C 1.33002 * 119.99432 * 179.97438 * 2 1 3 5 5 C 1.47103 * 120.00129 * 0.02562 * 4 2 1 6 6 O 1.21609 * 119.99934 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99741 * 179.97438 * 5 4 2 8 8 C 1.48144 * 127.84197 * 359.97438 * 7 5 4 9 9 C 1.54386 * 104.62005 * 219.60370 * 8 7 5 10 10 H 1.09002 * 110.34435 * 217.26232 * 9 8 7 11 11 N 1.46496 * 110.43229 * 95.04759 * 9 8 7 12 12 C 1.34783 * 120.00127 * 87.93685 * 11 9 8 13 13 O 1.21276 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99972 * 180.02562 * 12 11 9 15 15 S 1.81001 * 109.46683 * 180.02562 * 14 12 11 16 16 C 1.76209 * 99.99756 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99702 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00291 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46772 * 60.00382 * 20 18 16 22 22 H 1.48497 * 109.46991 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47287 * 299.99932 * 20 18 16 24 24 C 1.54281 * 104.96065 * 336.13450 * 9 8 7 25 25 C 1.52999 * 110.34787 * 118.86855 * 24 9 8 26 26 C 1.53006 * 110.34387 * 241.13090 * 24 9 8 27 27 C 1.48154 * 127.83692 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.47228 * 240.00346 * 1 2 3 29 29 H 1.09003 * 109.46750 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47676 * 119.99906 * 1 2 3 31 31 H 1.09000 * 109.47304 * 269.99954 * 3 2 1 32 32 H 1.08999 * 109.47107 * 30.00204 * 3 2 1 33 33 H 1.09000 * 109.47076 * 150.00419 * 3 2 1 34 34 H 1.08005 * 119.99684 * 179.97438 * 4 2 1 35 35 H 1.08999 * 110.40697 * 100.81942 * 8 7 5 36 36 H 1.08998 * 110.40769 * 338.39232 * 8 7 5 37 37 H 0.97003 * 120.00318 * 267.94439 * 11 9 8 38 38 H 1.09000 * 109.46621 * 299.99502 * 14 12 11 39 39 H 1.08995 * 109.47543 * 59.99870 * 14 12 11 40 40 H 0.96996 * 120.00642 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46997 * 59.99679 * 25 24 9 42 42 H 1.09004 * 109.47417 * 180.02562 * 25 24 9 43 43 H 1.09005 * 109.46950 * 300.00147 * 25 24 9 44 44 H 1.08996 * 109.47126 * 59.99440 * 26 24 9 45 45 H 1.08995 * 109.47333 * 180.02562 * 26 24 9 46 46 H 1.09000 * 109.46800 * 299.99898 * 26 24 9 47 47 H 1.09000 * 110.40147 * 21.60948 * 27 7 5 48 48 H 1.09000 * 110.40322 * 259.18172 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1519 0.0005 5 6 1.4363 -2.4258 0.0005 6 8 0.2202 -2.4257 0.0005 7 7 2.1101 -3.5930 0.0005 8 6 3.5777 -3.7951 0.0000 9 6 3.8063 -4.9887 -0.9521 10 1 4.6101 -5.6231 -0.5784 11 7 4.1195 -4.5135 -2.3020 12 6 5.3962 -4.2494 -2.6441 13 8 6.2855 -4.4049 -1.8344 14 6 5.7184 -3.7600 -4.0326 15 16 7.5032 -3.4987 -4.1810 16 6 7.5936 -2.9461 -5.8518 17 1 6.6932 -2.8625 -6.4423 18 6 8.8219 -2.6182 -6.4088 19 7 9.9192 -2.7196 -5.6890 20 14 8.9177 -2.0330 -8.1802 21 1 8.1110 -0.7962 -8.3372 22 1 10.3323 -1.7498 -8.5321 23 1 8.3861 -3.0883 -9.0797 24 6 2.4701 -5.7601 -0.9518 25 6 1.8746 -5.7933 -2.3608 26 6 2.6770 -7.1823 -0.4269 27 6 1.5512 -4.9650 0.0010 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 2.4423 1.6196 -1.0277 32 1 1.6716 2.0647 0.5139 33 1 3.2130 1.1745 0.5138 34 1 3.2519 -1.1519 0.0001 35 1 3.9284 -4.0368 1.0033 36 1 4.0837 -2.9062 -0.3766 37 1 3.4082 -4.3887 -2.9496 38 1 5.3983 -4.5030 -4.7630 39 1 5.1967 -2.8209 -4.2170 40 1 10.7776 -2.4909 -6.0783 41 1 2.5708 -6.2884 -3.0378 42 1 0.9321 -6.3405 -2.3441 43 1 1.6967 -4.7741 -2.7041 44 1 3.0640 -7.1411 0.5912 45 1 1.7255 -7.7139 -0.4332 46 1 3.3891 -7.7051 -1.0654 47 1 0.5280 -4.9586 -0.3748 48 1 1.5858 -5.3891 1.0046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001726130449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -76.471832 kcal Electronic energy + Delta-G solvation = -27759.541170 eV Core-core repulsion = 23940.182620 eV Total energy + Delta-G solvation = -3819.358550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81920 -40.46904 -39.20547 -36.37400 -35.29296 -34.58478 -34.38424 -31.38797 -29.77320 -29.24892 -28.66497 -28.10673 -27.61161 -26.79879 -24.33445 -21.89407 -21.24309 -20.48909 -19.73263 -18.94552 -18.35488 -17.82800 -17.55093 -16.92031 -16.87226 -16.25902 -16.17240 -15.87556 -15.39180 -15.24410 -14.94160 -14.89985 -14.52657 -14.42920 -14.16275 -14.05890 -13.69736 -13.54484 -13.40247 -13.23021 -13.21785 -13.16177 -12.93268 -12.86661 -12.72899 -12.63193 -12.54732 -12.46869 -12.01741 -11.95925 -11.75518 -11.66443 -11.12726 -10.93133 -10.68944 -10.36569 -10.27720 -10.16128 -9.56360 -8.64951 -8.34274 -6.11643 0.34905 1.26936 1.43577 1.46595 1.56297 1.59860 1.93029 2.20973 2.25932 2.29859 2.99830 3.21093 3.32309 3.47980 3.67514 3.84257 3.87290 3.92983 4.04018 4.14914 4.23791 4.29535 4.32917 4.50220 4.52043 4.55174 4.61490 4.65329 4.69535 4.73100 4.77635 4.81858 4.84010 4.87650 4.97511 4.98416 5.11074 5.12719 5.20944 5.26578 5.37664 5.42013 5.50301 5.51873 5.59458 6.19839 6.44263 6.47647 7.07280 7.12865 7.21270 8.74478 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.002941 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.973961 B = 9517.914304 C =11257.521976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.023 4.023 3 C -0.128 4.128 4 C -0.256 4.256 5 C 0.563 3.437 6 O -0.574 6.574 7 N -0.618 5.618 8 C 0.092 3.908 9 C 0.138 3.862 10 H 0.102 0.898 11 N -0.708 5.708 12 C 0.538 3.462 13 O -0.556 6.556 14 C -0.133 4.133 15 S -0.140 6.140 16 C -0.550 4.550 17 H 0.080 0.920 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 0.995 3.005 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.073 4.073 25 C -0.144 4.144 26 C -0.134 4.134 27 C 0.114 3.886 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.271 0.729 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 -1.485 11.860 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.025 4.025 3 C -0.184 4.184 4 C -0.277 4.277 5 C 0.357 3.643 6 O -0.456 6.456 7 N -0.351 5.351 8 C -0.032 4.032 9 C 0.032 3.968 10 H 0.120 0.880 11 N -0.364 5.364 12 C 0.324 3.676 13 O -0.433 6.433 14 C -0.284 4.284 15 S 0.087 5.913 16 C -0.698 4.698 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.817 3.183 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.075 4.075 25 C -0.201 4.201 26 C -0.192 4.192 27 C -0.009 4.009 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.251 0.749 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.038 -1.640 13.219 24.061 hybrid contribution -0.619 0.524 -2.151 2.299 sum -20.657 -1.116 11.068 23.462 Atomic orbital electron populations 1.20986 0.90901 1.02096 1.02825 1.22907 0.96992 0.95294 0.87349 1.21103 1.00296 0.93160 1.03843 1.22422 1.00482 0.91538 1.13267 1.18422 0.86440 0.83755 0.75664 1.90748 1.14518 1.87500 1.52871 1.48851 1.07811 1.05697 1.72735 1.22935 0.80349 0.99137 1.00799 1.22043 0.98112 0.94673 0.81979 0.88024 1.46126 1.07346 1.68006 1.14898 1.19985 0.82915 0.76338 0.88376 1.90691 1.47499 1.52518 1.52626 1.23386 1.02395 1.05142 0.97488 1.85483 1.01417 1.86962 1.17459 1.23181 0.96760 1.51809 0.98005 0.90151 1.26070 0.94136 0.94904 1.03773 1.70158 0.99008 1.46576 1.38868 0.85055 0.77619 0.79078 0.76582 1.18743 1.20346 1.18753 1.21728 0.92430 0.96398 0.96908 1.21850 1.01854 1.01678 0.94725 1.21840 1.03129 0.92644 1.01570 1.22581 0.98036 0.80125 1.00108 0.91252 0.90590 0.91613 0.89468 0.89167 0.90609 0.85288 0.88428 0.90746 0.74929 0.87531 0.87794 0.91964 0.91428 0.90267 0.93180 0.91165 0.90320 0.92209 0.90087 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.33 71.24 0.59 -1.56 16 2 C -0.02 -0.45 6.11 -17.62 -0.11 -0.56 16 3 C -0.13 -1.74 9.98 71.23 0.71 -1.03 16 4 C -0.26 -5.64 9.15 23.43 0.21 -5.42 16 5 C 0.56 13.97 7.83 86.57 0.68 14.65 16 6 O -0.57 -16.79 13.34 -4.06 -0.05 -16.84 16 7 N -0.62 -12.79 3.32 -812.16 -2.69 -15.48 16 8 C 0.09 1.86 6.59 86.53 0.57 2.43 16 9 C 0.14 2.80 3.01 45.90 0.14 2.94 16 10 H 0.10 2.31 7.17 -2.39 -0.02 2.29 16 11 N -0.71 -17.08 4.56 -438.25 -2.00 -19.08 16 12 C 0.54 18.61 7.85 87.66 0.69 19.30 16 13 O -0.56 -23.69 15.54 -3.02 -0.05 -23.74 16 14 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 15 S -0.14 -7.59 20.57 -56.49 -1.16 -8.75 16 16 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 17 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 18 C 0.02 0.91 5.49 84.86 0.47 1.38 16 19 N -0.91 -55.13 13.22 21.65 0.29 -54.84 16 20 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.07 -1.08 1.03 -51.26 -0.05 -1.13 16 25 C -0.14 -2.05 7.09 71.98 0.51 -1.54 16 26 C -0.13 -1.53 8.26 71.98 0.59 -0.94 16 27 C 0.11 1.85 6.14 86.54 0.53 2.38 16 28 H 0.07 1.52 7.22 -2.39 -0.02 1.50 16 29 H 0.08 1.07 7.94 -2.39 -0.02 1.05 16 30 H 0.07 1.50 7.22 -2.39 -0.02 1.48 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 0.91 8.05 -2.39 -0.02 0.89 16 33 H 0.08 1.00 8.07 -2.39 -0.02 0.98 16 34 H 0.13 2.69 6.73 -2.91 -0.02 2.67 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.75 6.61 -2.39 -0.02 1.73 16 37 H 0.41 8.37 5.85 -92.71 -0.54 7.82 16 38 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 39 H 0.10 3.68 8.14 -2.40 -0.02 3.67 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.07 0.99 7.74 -2.39 -0.02 0.97 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 0.81 7.00 -2.38 -0.02 0.79 16 44 H 0.07 0.71 8.10 -2.39 -0.02 0.70 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 1.45 7.60 -2.39 -0.02 1.43 16 48 H 0.09 1.20 7.83 -2.39 -0.02 1.18 16 Total: -1.00 -75.68 400.18 3.39 -72.29 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.41 Total: 25.47 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.62 Total: -4.15 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -4.41 Total: -89.40 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.10 Total: -40.58 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.75 kcal Total: -75.68 3.39 -72.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726130449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.177 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds