Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32994 * 120.00010 * 2 1 4 4 C 1.50696 * 119.99845 * 0.02562 * 3 2 1 5 5 C 1.47099 * 119.99843 * 179.97438 * 3 2 1 6 6 O 1.21615 * 120.00191 * 102.72128 * 5 3 2 7 7 N 1.34777 * 120.00416 * 282.72073 * 5 3 2 8 8 C 1.46505 * 119.99726 * 5.20521 * 7 5 3 9 9 C 1.46496 * 120.00346 * 185.20779 * 7 5 3 10 10 H 1.08999 * 109.46921 * 359.97438 * 9 7 5 11 11 C 1.52993 * 109.47597 * 120.00018 * 9 7 5 12 12 N 1.46503 * 109.46982 * 304.99830 * 11 9 7 13 13 C 1.34771 * 120.00202 * 179.97438 * 12 11 9 14 14 O 1.21285 * 120.00013 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00380 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47529 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99981 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00027 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99656 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00432 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47209 * 59.99903 * 21 19 17 23 23 H 1.48499 * 109.47316 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47083 * 300.00106 * 21 19 17 25 25 C 1.53000 * 109.46872 * 239.99948 * 9 7 5 26 26 C 1.53003 * 117.49713 * 248.74412 * 25 9 7 27 27 C 1.53002 * 117.49995 * 180.08347 * 25 9 7 28 28 H 1.08996 * 109.47108 * 300.00125 * 1 2 3 29 29 H 1.09003 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46808 * 60.00161 * 1 2 3 31 31 H 1.08005 * 119.99881 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47288 * 85.11760 * 4 3 2 33 33 H 1.09002 * 109.46642 * 205.10922 * 4 3 2 34 34 H 1.09004 * 109.47388 * 325.10981 * 4 3 2 35 35 H 1.08997 * 109.47446 * 85.49803 * 8 7 5 36 36 H 1.09000 * 109.46786 * 205.50143 * 8 7 5 37 37 H 1.09006 * 109.47034 * 325.50169 * 8 7 5 38 38 H 1.09000 * 109.47548 * 64.99324 * 11 9 7 39 39 H 1.09003 * 109.47623 * 185.00049 * 11 9 7 40 40 H 0.96999 * 119.99892 * 0.02562 * 12 11 9 41 41 H 1.09003 * 109.47128 * 300.00307 * 15 13 12 42 42 H 1.09003 * 109.46733 * 59.99944 * 15 13 12 43 43 H 0.96996 * 120.00254 * 179.97438 * 20 19 17 44 44 H 1.09003 * 115.55098 * 34.41437 * 25 9 7 45 45 H 1.08993 * 117.50072 * 359.97438 * 26 25 9 46 46 H 1.09005 * 117.49415 * 145.02342 * 26 25 9 47 47 H 1.08998 * 117.50098 * 214.97473 * 27 25 9 48 48 H 1.08997 * 117.49464 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2515 1.3834 -1.0266 7 7 4.3165 0.8949 1.1394 8 6 3.5881 0.5041 2.3489 9 6 5.7769 1.0067 1.1678 10 1 6.1377 1.3053 0.1836 11 6 6.1882 2.0562 2.2023 12 7 5.5111 3.3220 1.9094 13 6 5.7228 4.3968 2.6945 14 8 6.4741 4.3163 3.6432 15 6 5.0259 5.6987 2.3936 16 16 5.5125 6.9405 3.6172 17 6 4.5793 8.3196 3.0413 18 1 3.9503 8.2197 2.1690 19 6 4.6518 9.5341 3.7093 20 7 5.4172 9.6555 4.7732 21 14 3.6619 10.9961 3.0991 22 1 2.2158 10.6594 3.1228 23 1 3.9127 12.1657 3.9791 24 1 4.0707 11.3257 1.7100 25 6 6.3846 -0.3460 1.5444 26 6 7.0681 -0.4582 2.9087 27 6 7.9095 -0.4362 1.6301 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 2.0470 -0.9354 -0.0004 32 1 1.1614 2.7275 1.0247 33 1 2.0426 3.2368 -0.4356 34 1 0.5065 2.3501 -0.5869 35 1 3.4182 -0.5725 2.3390 36 1 4.1741 0.7715 3.2283 37 1 2.6298 1.0228 2.3795 38 1 5.9056 1.7151 3.1982 39 1 7.2674 2.2035 2.1612 40 1 4.9100 3.3862 1.1509 41 1 5.3083 6.0403 1.3977 42 1 3.9467 5.5510 2.4346 43 1 5.4681 10.5044 5.2398 44 1 5.8486 -1.2210 1.1766 45 1 7.0853 0.4318 3.5377 46 1 6.9821 -1.4071 3.4382 47 1 8.3767 -1.3706 1.3191 48 1 8.4798 0.4683 1.4186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735147154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -30.362543 kcal Electronic energy + Delta-G solvation = -27701.853210 eV Core-core repulsion = 23884.494109 eV Total energy + Delta-G solvation = -3817.359101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79941 -39.15210 -38.17922 -35.98568 -35.43519 -34.00674 -32.42667 -30.45671 -29.64621 -28.50693 -27.19632 -26.30019 -25.48259 -24.34228 -22.67640 -21.82722 -20.40441 -19.64476 -18.64345 -17.81482 -17.26978 -17.03895 -16.48999 -16.04758 -15.67935 -15.17692 -15.10313 -14.79943 -14.59757 -14.26943 -14.08455 -13.96709 -13.73503 -13.25039 -13.11261 -13.00993 -12.89014 -12.70081 -12.58415 -12.53895 -12.30805 -12.26225 -11.92722 -11.74262 -11.69650 -11.51874 -11.04318 -11.03495 -10.81971 -10.76784 -10.38454 -10.02404 -9.82653 -9.43908 -9.29810 -9.06244 -9.02466 -8.89624 -8.24266 -6.49862 -6.21331 -3.91938 1.40904 2.27582 2.63410 3.02018 3.08678 3.23842 3.27671 3.31052 3.48797 3.70470 4.14349 4.20891 4.36087 4.47387 4.58556 4.63512 4.68886 4.82397 4.87681 4.98785 5.01530 5.08616 5.13753 5.14439 5.18246 5.28259 5.36518 5.36816 5.40226 5.45278 5.52104 5.53524 5.58587 5.64535 5.68423 5.78385 5.79816 5.85082 5.89047 6.03699 6.14311 6.18286 6.25369 6.57987 7.00012 7.59639 7.67556 7.81691 8.35418 8.59022 9.23922 10.86049 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.002974 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.271394 B = 9414.055487 C =11436.198078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C -0.161 4.161 4 C -0.109 4.109 5 C 0.557 3.443 6 O -0.533 6.533 7 N -0.602 5.602 8 C 0.080 3.920 9 C 0.158 3.842 10 H 0.112 0.888 11 C 0.110 3.890 12 N -0.735 5.735 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.162 4.162 26 C -0.183 4.183 27 C -0.170 4.170 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -24.758 -7.948 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C -0.164 4.164 4 C -0.166 4.166 5 C 0.345 3.655 6 O -0.410 6.410 7 N -0.335 5.335 8 C -0.063 4.063 9 C 0.054 3.946 10 H 0.130 0.870 11 C -0.015 4.015 12 N -0.389 5.389 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.181 4.181 26 C -0.220 4.220 27 C -0.208 4.208 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.060 -24.639 -6.746 26.042 hybrid contribution -1.737 0.869 -1.798 2.646 sum -6.797 -23.770 -8.544 26.157 Atomic orbital electron populations 1.20885 0.91958 1.02715 1.02596 1.23214 0.96639 0.96539 0.97512 1.21385 0.92294 0.97430 1.05271 1.20737 0.99774 0.93296 1.02796 1.18697 0.88007 0.75797 0.82960 1.90832 1.69800 1.48698 1.31624 1.47870 1.06387 1.68157 1.11051 1.21784 0.97392 1.00005 0.87077 1.20840 0.79430 0.93094 1.01213 0.86997 1.21791 0.97966 0.83234 0.98551 1.45930 1.49544 1.10559 1.32897 1.20299 0.81442 0.84477 0.81874 1.90699 1.36103 1.84016 1.28406 1.23527 1.03040 0.97088 1.06712 1.85361 1.61320 1.02098 1.34380 1.22833 1.31669 0.97084 1.16868 0.90989 1.24981 0.95570 0.98323 0.94634 1.70003 1.36693 1.25984 1.17647 0.86232 0.80015 0.80561 0.78747 1.19932 1.20806 1.19918 1.22499 0.95630 0.97927 1.02055 1.23252 1.03912 1.04015 0.90833 1.23010 0.92303 1.03738 1.01723 0.90846 0.91728 0.90941 0.87009 0.90496 0.91238 0.90686 0.92521 0.90408 0.90797 0.90661 0.90353 0.76959 0.89274 0.89361 0.92128 0.87238 0.87537 0.88622 0.88486 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 8.97 36.01 0.32 -0.31 16 2 C -0.12 -0.85 9.51 -36.13 -0.34 -1.19 16 3 C -0.16 -1.44 4.09 -102.85 -0.42 -1.86 16 4 C -0.11 -0.89 9.46 36.00 0.34 -0.55 16 5 C 0.56 6.25 6.73 -12.67 -0.09 6.17 16 6 O -0.53 -7.98 16.45 5.26 0.09 -7.90 16 7 N -0.60 -5.63 2.24 -175.33 -0.39 -6.03 16 8 C 0.08 0.58 9.26 59.85 0.55 1.14 16 9 C 0.16 1.56 2.58 -67.94 -0.18 1.38 16 10 H 0.11 1.31 6.91 -51.93 -0.36 0.95 16 11 C 0.11 1.28 3.56 -4.04 -0.01 1.27 16 12 N -0.73 -10.39 5.39 -60.29 -0.32 -10.71 16 13 C 0.53 10.05 7.85 -10.99 -0.09 9.97 16 14 O -0.52 -11.63 15.86 5.55 0.09 -11.54 16 15 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.16 -1.30 5.48 -90.62 -0.50 -1.79 16 26 C -0.18 -1.37 9.59 -26.69 -0.26 -1.63 16 27 C -0.17 -1.29 9.94 -26.69 -0.27 -1.56 16 28 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.37 7.41 -51.93 -0.38 -0.02 16 31 H 0.11 0.75 8.05 -52.48 -0.42 0.32 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 0.51 6.69 -51.93 -0.35 0.16 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.59 6.53 -51.93 -0.34 0.26 16 37 H 0.07 0.51 6.95 -51.93 -0.36 0.15 16 38 H 0.08 0.88 5.33 -51.93 -0.28 0.60 16 39 H 0.08 0.97 7.44 -51.93 -0.39 0.58 16 40 H 0.40 5.19 7.87 -40.82 -0.32 4.87 16 41 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.11 0.91 5.80 -51.93 -0.30 0.61 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.80 7.65 -51.93 -0.40 0.40 16 LS Contribution 406.84 15.07 6.13 6.13 Total: -1.00 -35.38 406.84 -9.08 -44.46 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.66 Total: 3.33 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.51 Total: -4.91 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.02 Total: -42.20 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.38 -9.08 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735147154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.096 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds