Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32989 * 120.00307 * 2 1 4 4 C 1.50701 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.47108 * 119.99746 * 359.97438 * 3 2 1 6 6 O 1.21609 * 120.00035 * 303.52707 * 5 3 2 7 7 N 1.34777 * 119.99434 * 123.53316 * 5 3 2 8 8 C 1.46504 * 119.99510 * 186.26626 * 7 5 3 9 9 C 1.46491 * 120.00644 * 6.25778 * 7 5 3 10 10 H 1.09007 * 109.46883 * 19.28453 * 9 7 5 11 11 C 1.53000 * 109.47678 * 259.28016 * 9 7 5 12 12 N 1.46496 * 109.46650 * 54.99792 * 11 9 7 13 13 C 1.34788 * 119.99929 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99525 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99974 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.46687 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99935 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00039 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99818 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46858 * 90.00364 * 21 19 17 23 23 H 1.48503 * 109.47087 * 210.00342 * 21 19 17 24 24 H 1.48496 * 109.47325 * 330.00697 * 21 19 17 25 25 C 1.53003 * 109.47125 * 139.27712 * 9 7 5 26 26 C 1.52996 * 117.50067 * 248.75046 * 25 9 7 27 27 C 1.53005 * 117.49750 * 180.08862 * 25 9 7 28 28 H 1.08994 * 109.47255 * 300.00716 * 1 2 3 29 29 H 1.09002 * 109.46477 * 60.00302 * 1 2 3 30 30 H 1.08998 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99784 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47108 * 276.18684 * 4 3 2 33 33 H 1.09000 * 109.46791 * 36.18541 * 4 3 2 34 34 H 1.08999 * 109.46890 * 156.18283 * 4 3 2 35 35 H 1.09003 * 109.46807 * 274.91024 * 8 7 5 36 36 H 1.08996 * 109.47243 * 34.90988 * 8 7 5 37 37 H 1.08995 * 109.47316 * 154.91568 * 8 7 5 38 38 H 1.08996 * 109.47102 * 174.99802 * 11 9 7 39 39 H 1.08996 * 109.47238 * 294.99877 * 11 9 7 40 40 H 0.96999 * 120.00265 * 0.02562 * 12 11 9 41 41 H 1.09000 * 109.46824 * 299.99468 * 15 13 12 42 42 H 1.08996 * 109.47328 * 59.99908 * 15 13 12 43 43 H 0.96998 * 119.99539 * 179.97438 * 20 19 17 44 44 H 1.08998 * 115.54647 * 34.42374 * 25 9 7 45 45 H 1.09003 * 117.49952 * 0.02562 * 26 25 9 46 46 H 1.09004 * 117.50306 * 145.02183 * 26 25 9 47 47 H 1.09000 * 117.49540 * 214.98011 * 27 25 9 48 48 H 1.08997 * 117.50105 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6791 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.6291 2.6612 -0.8789 7 7 1.6577 3.3318 0.9723 8 6 0.8303 4.5382 1.0514 9 6 2.7252 3.1104 1.9508 10 1 3.4332 2.3809 1.5572 11 6 2.1214 2.5835 3.2541 12 7 1.3273 1.3846 2.9746 13 6 0.6966 0.7446 3.9793 14 8 0.7862 1.1617 5.1146 15 6 -0.1199 -0.4890 3.6919 16 16 -0.8355 -1.1113 5.2335 17 6 -1.7118 -2.5118 4.6205 18 1 -1.6864 -2.7458 3.5665 19 6 -2.4337 -3.3150 5.4925 20 7 -2.4641 -3.0302 6.7773 21 14 -3.3620 -4.8001 4.8427 22 1 -2.4751 -5.9908 4.8742 23 1 -4.5547 -5.0486 5.6917 24 1 -3.7939 -4.5416 3.4457 25 6 3.4506 4.4300 2.2216 26 6 4.8920 4.5588 1.7250 27 6 4.6084 4.4075 3.2216 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0470 -0.9354 0.0004 32 1 4.0420 1.0411 1.0224 33 1 4.0426 0.3221 -0.6058 34 1 4.0425 2.0917 -0.4145 35 1 1.2397 5.3034 0.3917 36 1 -0.1883 4.3010 0.7445 37 1 0.8241 4.9080 2.0767 38 1 2.9218 2.3349 3.9509 39 1 1.4817 3.3487 3.6936 40 1 1.2553 1.0513 2.0665 41 1 -0.9200 -0.2408 2.9945 42 1 0.5203 -1.2543 3.2531 43 1 -2.9689 -3.5913 7.3865 44 1 2.8269 5.3235 2.1938 45 1 5.3234 3.7035 1.2049 46 1 5.2168 5.5372 1.3708 47 1 4.7466 5.2864 3.8514 48 1 4.8530 3.4526 3.6869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735147157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -47.137510 kcal Electronic energy + Delta-G solvation = -28608.064688 eV Core-core repulsion = 24789.978170 eV Total energy + Delta-G solvation = -3818.086518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88831 -40.45072 -39.01732 -36.60807 -36.26565 -35.13612 -34.58426 -31.92484 -31.30547 -29.61167 -28.34910 -27.66662 -25.88899 -24.96297 -23.12539 -22.98685 -21.91229 -21.08865 -19.94334 -19.65597 -18.00108 -17.69063 -17.48435 -17.02756 -16.88170 -16.67270 -16.54829 -15.85690 -15.82983 -15.45421 -15.16050 -15.00038 -14.69508 -14.61284 -14.43046 -14.32809 -13.96677 -13.69337 -13.42816 -13.40351 -13.31459 -13.16607 -12.89352 -12.88903 -12.81684 -12.65005 -12.59785 -12.29916 -12.05367 -11.74881 -11.34317 -11.20514 -11.14418 -10.98570 -10.83833 -10.30295 -10.22901 -10.06529 -9.82056 -8.67696 -8.34959 -6.13085 0.47110 1.24143 1.42275 1.45135 1.51715 1.56244 1.60087 1.87136 2.19962 2.26468 2.86855 2.99373 3.28367 3.31256 3.55613 3.72122 3.77343 3.91290 3.96087 4.04856 4.15682 4.21152 4.25121 4.27921 4.38561 4.40745 4.43843 4.53135 4.56607 4.57984 4.64565 4.66600 4.77299 4.83447 4.87180 4.93508 5.07534 5.09308 5.22866 5.23829 5.31187 5.36824 5.41112 5.42053 5.48373 6.19396 6.19751 6.31663 6.96195 7.06533 7.11221 8.74192 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.003115 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.273879 B = 8986.197270 C =10034.112053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.203 4.203 4 C -0.115 4.115 5 C 0.548 3.452 6 O -0.569 6.569 7 N -0.599 5.599 8 C 0.081 3.919 9 C 0.147 3.853 10 H 0.130 0.870 11 C 0.104 3.896 12 N -0.721 5.721 13 C 0.532 3.468 14 O -0.556 6.556 15 C -0.131 4.131 16 S -0.139 6.139 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.996 3.004 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.259 1.259 25 C -0.177 4.177 26 C -0.162 4.162 27 C -0.169 4.169 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.403 0.597 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.475 13.475 -15.987 27.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.171 4.171 5 C 0.338 3.662 6 O -0.449 6.449 7 N -0.331 5.331 8 C -0.061 4.061 9 C 0.044 3.956 10 H 0.147 0.853 11 C -0.021 4.021 12 N -0.378 5.378 13 C 0.318 3.682 14 O -0.434 6.434 15 C -0.283 4.283 16 S 0.088 5.912 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.818 3.182 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.183 1.183 25 C -0.196 4.196 26 C -0.199 4.199 27 C -0.206 4.206 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.178 0.822 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.242 0.758 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.136 0.864 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 17.140 14.313 -14.406 26.574 hybrid contribution -1.243 -1.232 -1.530 2.324 sum 15.897 13.081 -15.935 26.034 Atomic orbital electron populations 1.21135 0.93629 1.03838 1.01919 1.23799 0.96124 0.98246 0.93006 1.21715 0.98613 0.91908 1.08388 1.21004 0.87683 1.04755 1.03626 1.18989 0.81822 0.84496 0.80879 1.90778 1.37536 1.79223 1.37335 1.47955 1.34363 1.21893 1.28852 1.21723 0.94685 0.86531 1.03208 1.21555 0.88749 0.98491 0.86819 0.85282 1.21923 0.95622 0.86435 0.98105 1.46092 1.51642 1.29302 1.10727 1.20070 0.79040 0.84243 0.84876 1.90685 1.62497 1.67321 1.22880 1.23394 1.02245 0.98462 1.04156 1.85523 1.62928 1.33862 1.08924 1.23197 1.35943 1.13138 0.97200 0.89956 1.26094 0.96845 1.01289 0.94720 1.70174 1.40833 1.39739 1.03888 0.84984 0.77483 0.77180 0.78543 1.19087 1.20365 1.18328 1.22390 0.91993 0.97158 1.08054 1.23155 0.95449 1.04418 0.96829 1.23089 1.00169 1.04451 0.92893 0.93326 0.90741 0.89778 0.82228 0.89191 0.88631 0.90604 0.91018 0.92692 0.89340 0.89448 0.91948 0.75761 0.88401 0.87172 0.91967 0.86409 0.87605 0.87566 0.87510 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.91 71.24 0.63 -2.77 16 2 C -0.09 -1.70 8.79 24.52 0.22 -1.48 16 3 C -0.20 -3.69 3.81 -18.70 -0.07 -3.76 16 4 C -0.11 -1.21 8.25 71.24 0.59 -0.62 16 5 C 0.55 12.88 5.66 86.57 0.49 13.37 16 6 O -0.57 -17.60 15.34 -4.06 -0.06 -17.66 16 7 N -0.60 -11.59 2.55 -826.87 -2.11 -13.70 16 8 C 0.08 1.46 8.99 127.77 1.15 2.60 16 9 C 0.15 2.24 2.21 44.99 0.10 2.34 16 10 H 0.13 1.61 3.10 -2.38 -0.01 1.60 16 11 C 0.10 2.27 5.08 86.38 0.44 2.71 16 12 N -0.72 -19.84 5.39 -463.07 -2.49 -22.34 16 13 C 0.53 20.21 7.85 87.65 0.69 20.90 16 14 O -0.56 -25.58 15.86 -3.02 -0.05 -25.63 16 15 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 16 S -0.14 -7.74 20.57 -56.49 -1.16 -8.90 16 17 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16 18 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 19 C 0.02 0.88 5.49 84.86 0.47 1.34 16 20 N -0.91 -55.58 13.22 21.65 0.29 -55.30 16 21 Si 1.00 43.43 29.55 68.60 2.03 45.45 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 C -0.18 -1.97 4.97 -10.79 -0.05 -2.03 16 26 C -0.16 -1.27 10.18 30.62 0.31 -0.96 16 27 C -0.17 -1.58 9.80 30.62 0.30 -1.28 16 28 H 0.05 1.27 6.79 -2.39 -0.02 1.26 16 29 H 0.07 1.90 7.10 -2.39 -0.02 1.88 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.09 0.74 6.59 -2.39 -0.02 0.72 16 33 H 0.10 0.72 8.11 -2.39 -0.02 0.70 16 34 H 0.08 0.72 8.04 -2.39 -0.02 0.70 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.22 7.67 -2.39 -0.02 1.20 16 37 H 0.09 1.32 7.07 -2.39 -0.02 1.30 16 38 H 0.09 1.85 7.47 -2.39 -0.02 1.83 16 39 H 0.06 1.52 7.92 -2.39 -0.02 1.50 16 40 H 0.40 9.83 3.06 -92.71 -0.28 9.54 16 41 H 0.10 3.78 7.78 -2.40 -0.02 3.76 16 42 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.12 1.27 6.51 -2.39 -0.02 1.26 16 45 H 0.11 0.64 8.05 -2.39 -0.02 0.63 16 46 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.10 0.97 7.66 -2.39 -0.02 0.95 16 Total: -1.00 -79.99 397.25 3.46 -76.52 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.68 Total: 26.59 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 6.34 Total: -5.04 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -4.32 Total: -91.33 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.11 Total: -43.29 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.16 Total: -8.90 kcal Total: -79.99 3.46 -76.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735147157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.387 kcal (2) G-P(sol) polarization free energy of solvation -79.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds