Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32999 * 119.99566 * 2 1 4 4 C 1.50696 * 120.00094 * 0.02562 * 3 2 1 5 5 C 1.47101 * 119.99824 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99878 * 0.02562 * 5 3 2 7 7 N 1.34778 * 120.00060 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00129 * 179.97438 * 7 5 3 9 9 H 1.09003 * 109.51765 * 35.08792 * 8 7 5 10 10 C 1.53037 * 109.50017 * 275.00466 * 8 7 5 11 11 C 1.53042 * 109.53750 * 178.68387 * 10 8 7 12 12 C 1.53195 * 109.31329 * 61.36421 * 11 10 8 13 13 N 1.46931 * 108.88879 * 305.29298 * 12 11 10 14 14 C 1.34775 * 120.62773 * 233.67633 * 13 12 11 15 15 O 1.21282 * 120.00172 * 185.67776 * 14 13 12 16 16 C 1.50701 * 120.00178 * 5.68262 * 14 13 12 17 17 S 1.81002 * 109.47344 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00171 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99602 * 0.02562 * 18 17 16 20 20 C 1.38791 * 119.99889 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99628 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00145 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47073 * 90.00149 * 22 20 18 24 24 H 1.48504 * 109.47465 * 210.00053 * 22 20 18 25 25 H 1.48498 * 109.47559 * 330.00168 * 22 20 18 26 26 C 1.47203 * 118.55439 * 53.54547 * 13 12 11 27 27 H 1.08996 * 109.56465 * 66.29209 * 26 13 12 28 28 C 1.53002 * 109.64623 * 186.59831 * 26 13 12 29 29 H 1.08989 * 109.47476 * 299.99962 * 1 2 3 30 30 H 1.09002 * 109.47041 * 60.00347 * 1 2 3 31 31 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00279 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46917 * 269.99622 * 4 3 2 34 34 H 1.08995 * 109.47244 * 29.99601 * 4 3 2 35 35 H 1.09003 * 109.47359 * 149.99897 * 4 3 2 36 36 H 0.96997 * 119.99834 * 0.02562 * 7 5 3 37 37 H 1.08997 * 109.45761 * 58.66200 * 10 8 7 38 38 H 1.08995 * 109.44779 * 298.69544 * 10 8 7 39 39 H 1.09002 * 109.49616 * 301.41126 * 11 10 8 40 40 H 1.09001 * 109.52467 * 181.33333 * 11 10 8 41 41 H 1.08998 * 109.58421 * 65.15497 * 12 11 10 42 42 H 1.08996 * 109.58101 * 185.43983 * 12 11 10 43 43 H 1.08998 * 109.46969 * 299.99927 * 16 14 13 44 44 H 1.09000 * 109.47197 * 59.99745 * 16 14 13 45 45 H 0.97007 * 119.99697 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.46993 * 173.93565 * 28 26 13 47 47 H 1.08996 * 109.47555 * 293.93533 * 28 26 13 48 48 H 1.08998 * 109.47170 * 53.94334 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4183 2.4569 0.0006 5 6 3.6429 1.1519 0.0006 6 8 4.2510 0.0987 0.0006 7 7 4.3168 2.3192 0.0011 8 6 5.7818 2.3192 0.0022 9 1 6.1464 1.4786 -0.5881 10 6 6.2915 2.1934 1.4397 11 6 7.8216 2.1604 1.4391 12 6 8.3564 3.4692 0.8493 13 7 7.7594 3.6717 -0.4779 14 6 8.5391 3.8884 -1.5557 15 8 8.0343 4.1561 -2.6255 16 6 10.0383 3.7978 -1.4317 17 16 10.7983 4.1368 -3.0390 18 6 12.5001 3.9693 -2.6143 19 1 12.7821 3.7240 -1.6010 20 6 13.4781 4.1526 -3.5818 21 7 14.7495 4.0270 -3.2646 22 14 12.9903 4.5761 -5.3345 23 1 12.9162 6.0517 -5.4849 24 1 14.0028 4.0328 -6.2753 25 1 11.6640 3.9806 -5.6369 26 6 6.2934 3.6298 -0.6039 27 1 5.8569 4.4741 -0.0704 28 6 5.9018 3.6989 -2.0814 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.0470 -0.9352 -0.0004 33 1 1.2363 2.7718 -1.0270 34 1 0.4661 2.3264 0.5147 35 1 2.0076 3.2165 0.5144 36 1 3.8317 3.1591 0.0015 37 1 5.9086 1.2735 1.8815 38 1 5.9470 3.0473 2.0230 39 1 8.1671 1.3212 0.8354 40 1 8.1839 2.0470 2.4609 41 1 8.0881 4.3004 1.5014 42 1 9.4409 3.4121 0.7573 43 1 10.3874 4.5292 -0.7028 44 1 10.3158 2.7963 -1.1029 45 1 15.4331 4.1554 -3.9408 46 1 4.8251 3.5596 -2.1788 47 1 6.1803 4.6719 -2.4860 48 1 6.4209 2.9144 -2.6319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735366390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -53.807570 kcal Electronic energy + Delta-G solvation = -27655.519041 eV Core-core repulsion = 23837.143288 eV Total energy + Delta-G solvation = -3818.375753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83632 -39.75693 -37.45764 -35.86509 -34.94533 -32.83306 -32.43804 -32.06095 -29.84020 -28.64751 -27.28930 -26.56405 -25.60783 -24.72890 -22.67957 -21.78276 -20.96159 -19.52725 -18.62350 -17.64725 -17.40588 -16.79175 -16.26989 -15.80009 -15.45435 -15.41707 -14.95632 -14.69622 -14.48004 -14.45882 -13.90925 -13.83820 -13.69746 -13.51832 -13.24063 -13.05296 -12.91842 -12.79173 -12.66993 -12.54614 -12.41675 -12.03594 -11.89485 -11.69476 -11.36200 -11.29077 -11.19226 -11.15129 -11.05790 -11.00010 -10.59579 -10.12838 -9.85216 -9.51061 -9.28617 -9.00478 -8.88966 -8.57215 -8.49298 -6.91962 -6.28976 -4.00678 1.02892 2.52135 2.85926 2.96054 3.01111 3.25004 3.32902 3.50345 3.58517 4.29679 4.32678 4.44627 4.47147 4.48579 4.67985 4.72842 4.74555 4.79597 4.82151 4.97178 5.03666 5.08391 5.10122 5.19225 5.21594 5.25096 5.32192 5.38791 5.41103 5.51397 5.52834 5.69215 5.71675 5.73519 5.76842 5.86640 5.98740 6.01486 6.02377 6.08556 6.13130 6.22758 6.38612 6.68922 7.23045 7.44549 7.94017 7.98078 8.41368 8.42793 9.17213 10.80200 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.002298 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.217079 B =12180.190355 C =12684.739665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.193 4.193 4 C -0.118 4.118 5 C 0.555 3.445 6 O -0.541 6.541 7 N -0.718 5.718 8 C 0.134 3.866 9 H 0.094 0.906 10 C -0.128 4.128 11 C -0.133 4.133 12 C 0.104 3.896 13 N -0.613 5.613 14 C 0.536 3.464 15 O -0.508 6.508 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.144 3.856 27 H 0.071 0.929 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.082 -2.821 12.337 30.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 C -0.196 4.196 4 C -0.175 4.175 5 C 0.344 3.656 6 O -0.420 6.420 7 N -0.369 5.369 8 C 0.028 3.972 9 H 0.112 0.888 10 C -0.166 4.166 11 C -0.172 4.172 12 C -0.019 4.019 13 N -0.350 5.350 14 C 0.324 3.676 15 O -0.383 6.383 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C 0.040 3.960 27 H 0.089 0.911 28 C -0.197 4.197 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.102 0.898 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.172 -3.150 10.671 30.289 hybrid contribution 0.597 0.229 0.708 0.954 sum -27.574 -2.921 11.379 29.973 Atomic orbital electron populations 1.20997 0.92065 1.03148 1.02596 1.23596 0.96299 0.97991 0.91410 1.21412 0.92586 0.96862 1.08751 1.20828 1.00082 0.93920 1.02648 1.18379 0.87723 0.83599 0.75905 1.90804 1.70054 1.31191 1.49913 1.45858 1.06843 1.08750 1.75476 1.21417 0.79250 0.99457 0.97084 0.88753 1.21906 0.95854 1.02659 0.96222 1.21907 0.95071 0.98287 1.01952 1.21818 0.99434 0.97273 0.83361 1.48090 1.05221 1.73390 1.08323 1.20274 0.88598 0.75606 0.83113 1.90734 1.74109 1.45924 1.27531 1.23365 0.93379 1.05549 1.05076 1.84764 1.04795 1.92908 1.09103 1.22304 0.88395 1.55565 1.00557 0.89405 1.24713 0.94052 0.93523 0.99049 1.69943 0.99402 1.47437 1.34871 0.86731 0.80782 0.80135 0.84167 1.19237 1.19967 1.15934 1.21343 0.80565 0.95522 0.98583 0.91060 1.22218 0.98860 1.05567 0.93023 0.90625 0.90677 0.91352 0.85585 0.90795 0.90867 0.91817 0.76475 0.91084 0.91628 0.90873 0.90116 0.91188 0.88777 0.88606 0.88501 0.91954 0.93966 0.89753 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 8.91 36.01 0.32 -0.25 16 2 C -0.07 -0.54 9.84 -36.13 -0.36 -0.90 16 3 C -0.19 -1.54 6.00 -102.85 -0.62 -2.16 16 4 C -0.12 -0.57 9.14 36.00 0.33 -0.24 16 5 C 0.56 6.12 7.71 -12.66 -0.10 6.02 16 6 O -0.54 -8.15 15.88 5.26 0.08 -8.07 16 7 N -0.72 -6.52 4.43 -54.87 -0.24 -6.76 16 8 C 0.13 1.44 2.00 -67.81 -0.14 1.30 16 9 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 10 C -0.13 -1.20 5.46 -26.69 -0.15 -1.35 16 11 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 12 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 13 N -0.61 -8.10 2.98 -165.01 -0.49 -8.60 16 14 C 0.54 9.39 7.53 -10.99 -0.08 9.31 16 15 O -0.51 -10.32 11.49 5.56 0.06 -10.25 16 16 C -0.12 -2.37 4.51 36.01 0.16 -2.20 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 22 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 C 0.14 1.64 3.03 -67.45 -0.20 1.43 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 C -0.14 -1.85 7.57 37.16 0.28 -1.57 16 29 H 0.08 0.26 7.40 -51.94 -0.38 -0.13 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.13 1.11 7.49 -52.49 -0.39 0.72 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.26 6.49 -51.93 -0.34 -0.07 16 35 H 0.06 0.25 6.70 -51.93 -0.35 -0.10 16 36 H 0.40 2.59 6.70 -40.82 -0.27 2.31 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 43 H 0.10 1.71 7.71 -51.92 -0.40 1.31 16 44 H 0.10 1.77 7.92 -51.92 -0.41 1.36 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.04 0.46 7.64 -51.93 -0.40 0.06 16 47 H 0.08 1.27 6.59 -51.93 -0.34 0.93 16 48 H 0.07 1.13 6.95 -51.93 -0.36 0.77 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -35.06 390.32 -8.88 -43.94 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.73 Total: 0.98 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.51 Total: -2.89 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.04 Total: -41.11 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.15 Total: -18.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.06 -8.88 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735366390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.865 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds