Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32993 * 120.00102 * 2 1 4 4 C 1.50698 * 120.00102 * 180.02562 * 3 2 1 5 5 C 1.47099 * 120.00111 * 359.97438 * 3 2 1 6 6 O 1.21619 * 119.99511 * 0.02562 * 5 3 2 7 7 N 1.34771 * 120.00485 * 179.97438 * 5 3 2 8 8 C 1.46497 * 120.00506 * 179.97438 * 7 5 3 9 9 H 1.09004 * 109.49568 * 34.94429 * 8 7 5 10 10 C 1.53036 * 109.47428 * 274.86398 * 8 7 5 11 11 C 1.53041 * 109.53619 * 301.35807 * 10 8 7 12 12 C 1.53184 * 109.34170 * 298.68763 * 11 10 8 13 13 N 1.46920 * 108.78033 * 54.61984 * 12 11 10 14 14 C 1.34774 * 120.63776 * 126.36979 * 13 12 11 15 15 O 1.21278 * 120.00376 * 174.21830 * 14 13 12 16 16 C 1.50700 * 119.99489 * 354.21315 * 14 13 12 17 17 S 1.81002 * 109.47250 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00194 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00325 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00302 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99647 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00281 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47324 * 89.99975 * 22 20 18 24 24 H 1.48502 * 109.46960 * 209.99721 * 22 20 18 25 25 H 1.48498 * 109.47231 * 329.99687 * 22 20 18 26 26 C 1.46935 * 118.73671 * 306.39019 * 13 12 11 27 27 H 1.08998 * 109.58628 * 293.81929 * 26 13 12 28 28 C 1.52996 * 109.58785 * 173.53378 * 26 13 12 29 29 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47529 * 300.00579 * 1 2 3 31 31 H 1.09002 * 109.47085 * 60.00752 * 1 2 3 32 32 H 1.08003 * 119.99984 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47379 * 269.99474 * 4 3 2 34 34 H 1.09004 * 109.47558 * 29.99376 * 4 3 2 35 35 H 1.09004 * 109.47373 * 149.99295 * 4 3 2 36 36 H 0.97009 * 119.99822 * 0.02562 * 7 5 3 37 37 H 1.08999 * 109.43110 * 181.36076 * 10 8 7 38 38 H 1.08993 * 109.48768 * 61.40139 * 10 8 7 39 39 H 1.09000 * 109.49831 * 178.71538 * 11 10 8 40 40 H 1.09001 * 109.49828 * 58.65719 * 11 10 8 41 41 H 1.09002 * 109.58584 * 174.40759 * 12 11 10 42 42 H 1.09001 * 109.58469 * 294.82879 * 12 11 10 43 43 H 1.08995 * 109.47748 * 300.00381 * 16 14 13 44 44 H 1.09004 * 109.47045 * 60.00574 * 16 14 13 45 45 H 0.97003 * 120.00253 * 180.02562 * 21 20 18 46 46 H 1.09009 * 109.46923 * 65.78247 * 28 26 13 47 47 H 1.08993 * 109.47169 * 185.77768 * 28 26 13 48 48 H 1.09002 * 109.47452 * 305.78272 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6789 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2203 2.4256 -0.0006 7 7 2.1103 3.5929 0.0000 8 6 1.3779 4.8616 -0.0012 9 1 0.4659 4.7557 0.5863 10 6 1.0185 5.2420 -1.4393 11 6 2.2970 5.3592 -2.2724 12 6 3.1845 6.4621 -1.6871 13 7 3.4155 6.1781 -0.2643 14 6 4.6681 6.1194 0.2298 15 8 4.8440 5.9888 1.4226 16 6 5.8501 6.2158 -0.7001 17 16 7.3819 6.1062 0.2579 18 6 8.5651 6.2434 -1.0404 19 1 8.2348 6.3554 -2.0625 20 6 9.9218 6.2065 -0.7497 21 7 10.3245 6.0695 0.4960 22 14 11.1763 6.3527 -2.1260 23 1 11.5140 7.7832 -2.3383 24 1 12.4046 5.6036 -1.7579 25 1 10.6078 5.7875 -3.3760 26 6 2.2550 5.9589 0.6099 27 1 1.6809 6.8817 0.6932 28 6 2.7325 5.5249 1.9971 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 2.0470 -0.9353 0.0004 33 1 4.0427 1.1516 1.0269 34 1 4.0422 0.2618 -0.5147 35 1 4.0421 2.0418 -0.5145 36 1 3.0804 3.5929 0.0003 37 1 0.4948 6.1979 -1.4415 38 1 0.3746 4.4744 -1.8683 39 1 2.0389 5.6078 -3.3018 40 1 2.8335 4.4107 -2.2508 41 1 4.1379 6.4826 -2.2151 42 1 2.6861 7.4259 -1.7912 43 1 5.8128 5.3993 -1.4211 44 1 5.8199 7.1688 -1.2284 45 1 11.2726 6.0441 0.6993 46 1 3.2795 6.3433 2.4656 47 1 1.8716 5.2642 2.6126 48 1 3.3867 4.6583 1.9016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735366393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = -48.831352 kcal Electronic energy + Delta-G solvation = -28661.736502 eV Core-core repulsion = 24843.576533 eV Total energy + Delta-G solvation = -3818.159968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95267 -39.60490 -37.42852 -35.12278 -34.54393 -32.82041 -32.46561 -32.07047 -30.00268 -28.75601 -27.27332 -25.51868 -25.18794 -24.62617 -22.95866 -22.17148 -20.55681 -19.54249 -18.84097 -17.62679 -16.63129 -16.39601 -16.30499 -15.75082 -15.48942 -14.94620 -14.84103 -14.44239 -14.41017 -14.26473 -14.00895 -13.65122 -13.54875 -13.20717 -13.06251 -12.89908 -12.78300 -12.68765 -12.60955 -12.25978 -12.09857 -12.06547 -11.89476 -11.60705 -11.43701 -11.15295 -11.10783 -11.06430 -10.96390 -10.86502 -10.79256 -9.84433 -9.64680 -9.35925 -9.10687 -9.00687 -8.77047 -8.49859 -8.27639 -6.54810 -6.25977 -3.96704 1.26087 2.82312 2.95456 3.12636 3.18169 3.19051 3.23213 3.27002 3.53516 4.16160 4.44607 4.56372 4.60704 4.70554 4.73010 4.79312 4.96674 5.07221 5.09449 5.16182 5.19914 5.26592 5.27958 5.48285 5.50068 5.52693 5.54646 5.55368 5.61316 5.70205 5.76014 5.77248 5.80074 5.85025 5.91957 5.98921 6.01299 6.06286 6.18955 6.29553 6.38434 6.39530 6.48285 6.75657 7.45321 7.51327 7.55533 8.16475 8.30762 8.50720 9.19658 10.81296 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.003107 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.642524 B = 9009.791130 C = 9828.609573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 C -0.193 4.193 4 C -0.117 4.117 5 C 0.552 3.448 6 O -0.544 6.544 7 N -0.712 5.712 8 C 0.135 3.865 9 H 0.097 0.903 10 C -0.129 4.129 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.619 5.619 14 C 0.533 3.467 15 O -0.505 6.505 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.917 3.083 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.139 3.861 27 H 0.082 0.918 28 C -0.138 4.138 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.085 0.915 47 H 0.041 0.959 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.522 -6.061 -4.434 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C -0.196 4.196 4 C -0.174 4.174 5 C 0.342 3.658 6 O -0.424 6.424 7 N -0.365 5.365 8 C 0.030 3.970 9 H 0.115 0.885 10 C -0.168 4.168 11 C -0.172 4.172 12 C -0.017 4.017 13 N -0.356 5.356 14 C 0.321 3.679 15 O -0.379 6.379 16 C -0.304 4.304 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.035 3.965 27 H 0.100 0.900 28 C -0.195 4.195 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.060 0.940 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.944 -6.237 -2.523 21.048 hybrid contribution 1.181 0.301 -2.466 2.751 sum -18.763 -5.936 -4.990 20.302 Atomic orbital electron populations 1.21002 0.91818 1.00739 1.04016 1.23606 0.97126 0.96695 0.91933 1.21516 0.96566 0.93140 1.08415 1.20792 0.90577 1.03067 1.02982 1.18399 0.87178 0.84130 0.76090 1.90754 1.13485 1.87663 1.50469 1.45961 1.10706 1.05045 1.74753 1.21392 0.95618 0.83186 0.96847 0.88529 1.21895 0.97642 1.02137 0.95119 1.21884 0.96412 0.99646 0.99294 1.21764 1.01078 0.97889 0.80923 1.48211 1.05310 1.72759 1.09327 1.20340 0.83014 0.75420 0.89152 1.90753 1.84685 1.47093 1.15404 1.23619 0.99485 1.04617 1.02685 1.85369 0.91208 1.95650 1.10983 1.22847 0.92823 1.58267 0.94443 0.91009 1.24982 0.97684 0.94527 0.96318 1.70013 1.16127 1.46434 1.17652 0.86186 0.79987 0.78369 0.81075 1.20270 1.20748 1.19697 1.21509 0.86790 0.96983 0.91220 0.90027 1.22197 0.99784 1.04169 0.93351 0.93214 0.90228 0.90250 0.85898 0.90710 0.91042 0.91722 0.76007 0.90865 0.91102 0.90680 0.91385 0.89080 0.91321 0.89451 0.89401 0.92171 0.89653 0.94038 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.45 36.00 0.30 -0.86 16 2 C -0.07 -0.70 9.95 -36.13 -0.36 -1.06 16 3 C -0.19 -2.09 6.00 -102.85 -0.62 -2.71 16 4 C -0.12 -1.16 9.61 36.00 0.35 -0.81 16 5 C 0.55 6.85 7.68 -12.67 -0.10 6.75 16 6 O -0.54 -7.74 12.73 5.26 0.07 -7.67 16 7 N -0.71 -8.16 3.49 -54.87 -0.19 -8.35 16 8 C 0.14 1.43 2.33 -67.81 -0.16 1.27 16 9 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 10 C -0.13 -1.18 5.58 -26.69 -0.15 -1.33 16 11 C -0.13 -1.19 5.93 -26.61 -0.16 -1.35 16 12 C 0.11 1.06 6.35 -3.72 -0.02 1.04 16 13 N -0.62 -7.82 2.63 -165.22 -0.43 -8.26 16 14 C 0.53 9.06 7.52 -10.99 -0.08 8.98 16 15 O -0.51 -10.12 11.43 5.56 0.06 -10.06 16 16 C -0.15 -2.89 4.51 36.01 0.16 -2.73 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 18 C -0.54 -14.74 9.50 30.94 0.29 -14.44 16 19 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.52 13.22 55.49 0.73 -24.78 16 22 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.14 1.59 3.19 -67.59 -0.22 1.37 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.14 -1.86 7.30 37.16 0.27 -1.58 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.89 7.22 -51.93 -0.37 0.51 16 31 H 0.08 0.87 7.22 -51.93 -0.37 0.50 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.06 0.67 6.70 -51.93 -0.35 0.32 16 36 H 0.40 4.86 5.90 -40.82 -0.24 4.62 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 41 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.53 7.93 -51.92 -0.41 1.11 16 44 H 0.09 1.56 7.71 -51.91 -0.40 1.16 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.08 1.34 6.55 -51.92 -0.34 1.00 16 47 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 1.05 6.12 -51.93 -0.32 0.73 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -32.36 388.09 -9.39 -41.75 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.67 Total: 4.86 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.58 Total: -5.50 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.11 Total: -41.39 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.13 Total: -17.73 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.36 -9.39 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735366393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.079 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds